| The Human Phenotype Ontology in 2024: phenotypes around the world. |
Gargano, Michael A; Matentzoglu, Nicolas; Coleman, Ben; Addo-Lartey, Eunice B; Anagnostopoulos, Anna V; Anderton, Joel; Avillach, Paul; Bagley, Anita M; Bakštein, Eduard; Balhoff, James P; Baynam, Gareth; Bello, Susan M; Berk, Michael; Bertram, Holli; Bishop, Somer; Blau, Hannah; Bodenstein, David F; Botas, Pablo; Boztug, Kaan; Čady, Jolana; Callahan, Tiffany J; Cameron, Rhiannon; Carbon, Seth J; Castellanos, Francisco; Caufield, J Harry; Chan, Lauren E; Chute, Christopher G; Cruz-Rojo, Jaime; Dahan-Oliel, Noémi; Davids, Jon R; de Dieuleveult, Maud; de Souza, Vinicius; de Vries, Bert B A; de Vries, Esther; DePaulo, J Raymond; Derfalvi, Beata; Dhombres, Ferdinand; Diaz-Byrd, Claudia; Dingemans, Alexander J M; Donadille, Bruno; Duyzend, Michael; Elfeky, Reem; Essaid, Shahim; Fabrizzi, Carolina; Fico, Giovanna; Firth, Helen V; Freudenberg-Hua, Yun; Fullerton, Janice M; Gabriel, Davera L; Gilmour, Kimberly; Giordano, Jessica; Goes, Fernando S; Moses, Rachel Gore; Green, Ian; Griese, Matthias; Groza, Tudor; Gu, Weihong; Guthrie, Julia; Gyori, Benjamin; Hamosh, Ada; Hanauer, Marc; Hanušová, Kateřina; He, Yongqun Oliver; Hegde, Harshad; Helbig, Ingo; Holasová, Kateřina; Hoyt, Charles Tapley; Huang, Shangzhi; Hurwitz, Eric; Jacobsen, Julius O B; Jiang, Xiaofeng; Joseph, Lisa; Keramatian, Kamyar; King, Bryan; Knoflach, Katrin; Koolen, David A; Kraus, Megan L; Kroll, Carlo; Kusters, Maaike; Ladewig, Markus S; Lagorce, David; Lai, Meng-Chuan; Lapunzina, Pablo; Laraway, Bryan; Lewis-Smith, David; Li, Xiarong; Lucano, Caterina; Majd, Marzieh; Marazita, Mary L; Martinez-Glez, Victor; McHenry, Toby H; McInnis, Melvin G; McMurry, Julie A; Mihulová, Michaela; Millett, Caitlin E; Mitchell, Philip B; Moslerová, Veronika; Narutomi, Kenji; Nematollahi, Shahrzad; Nevado, Julian; Nierenberg, Andrew A; Čajbiková, Nikola Novák; Nurnberger Jr, John I; Ogishima, Soichi; Olson, Daniel; Ortiz, Abigail; Pachajoa, Harry; Perez de Nanclares, Guiomar; Peters, Amy; Putman, Tim; Rapp, Christina K; Rath, Ana; Reese, Justin; Rekerle, Lauren; Roberts, Angharad M; Roy, Suzy; Sanders, Stephan J; Schuetz, Catharina; Schulte, Eva C; Schulze, Thomas G; Schwarz, Martin; Scott, Katie; Seelow, Dominik; Seitz, Berthold; Shen, Yiping; Similuk, Morgan N; Simon, Eric S; Singh, Balwinder; Smedley, Damian; Smith, Cynthia L; Smolinsky, Jake T; Sperry, Sarah; Stafford, Elizabeth; Stefancsik, Ray; Steinhaus, Robin; Strawbridge, Rebecca; Sundaramurthi, Jagadish Chandrabose; Talapova, Polina; Tenorio Castano, Jair A; Tesner, Pavel; Thomas, Rhys H; Thurm, Audrey; Turnovec, Marek; van Gijn, Marielle E; Vasilevsky, Nicole A; Vlčková, Markéta; Walden, Anita; Wang, Kai; Wapner, Ron; Ware, James S; Wiafe, Addo A; Wiafe, Samuel A; Wiggins, Lisa D; Williams, Andrew E; Wu, Chen; Wyrwoll, Margot J; Xiong, Hui; Yalin, Nefize; Yamamoto, Yasunori; Yatham, Lakshmi N; Yocum, Anastasia K; Young, Allan H; Yüksel, Zafer; Zandi, Peter P; Zankl, Andreas; Zarante, Ignacio; Zvolský, Miroslav; Toro, Sabrina; Carmody, Leigh C; Harris, Nomi L; Munoz-Torres, Monica C; Danis, Daniel; Mungall, Christopher J; Köhler, Sebastian; Haendel, Melissa A; Robinson, Peter N |
Nucleic acids research |
37953324 |
2024 Jan 05 |
| Adolescents' pain-related ontogeny shares a neural basis with adults' chronic pain in basothalamo-cortical organization. |
Heukamp, Nils Jannik; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Kandić, Mina; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Lemaitre, Herve; Löffler, Martin; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Usai, Katrin; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Flor, Herta; Nees, Frauke; IMAGEN Consortium |
iScience |
38322983 |
2024 Feb 16 |
| Structural brain abnormalities and aggressive behaviour in schizophrenia: Mega-analysis of data from 2095 patients and 2861 healthy controls via the ENIGMA consortium. |
Lamsma, Jelle; Raine, Adrian; Kia, Seyed M; Cahn, Wiepke; Arold, Dominic; Banaj, Nerisa; Barone, Annarita; Brosch, Katharina; Brouwer, Rachel; Brunetti, Arturo; Calhoun, Vince D; Chew, Qian H; Choi, Sunah; Chung, Young-Chul; Ciccarelli, Mariateresa; Cobia, Derin; Cocozza, Sirio; Dannlowski, Udo; Dazzan, Paola; de Bartolomeis, Andrea; Di Forti, Marta; Dumais, Alexandre; Edmond, Jesse T; Ehrlich, Stefan; Evermann, Ulrika; Flinkenflügel, Kira; Georgiadis, Foivos; Glahn, David C; Goltermann, Janik; Green, Melissa J; Grotegerd, Dominik; Guerrero-Pedraza, Amalia; Ha, Minji; Hong, Elliot L; Hulshoff Pol, Hilleke; Iasevoli, Felice; Kaiser, Stefan; Kaleda, Vasily; Karuk, Andriana; Kim, Minah; Kircher, Tilo; Kirschner, Matthias; Kochunov, Peter; Kwon, Jun Soo; Lebedeva, Irina; Lencer, Rebekka; Marques, Tiago R; Meinert, Susanne; Murray, Robin; Nenadić, Igor; Nguyen, Dana; Pearlson, Godfrey; Piras, Fabrizio; Pomarol-Clotet, Edith; Pontillo, Giuseppe; Potvin, Stéphane; Preda, Adrian; Quidé, Yann; Rodrigue, Amanda; Rootes-Murdy, Kelly; Salvador, Raymond; Skoch, Antonin; Sim, Kang; Spalletta, Gianfranco; Spaniel, Filip; Stein, Frederike; Thomas-Odenthal, Florian; Tikàsz, Andràs; Tomecek, David; Tomyshev, Alexander; Tranfa, Mario; Tsogt, Uyanga; Turner, Jessica A; van Erp, Theo G M; van Haren, Neeltje E M; van Os, Jim; Vecchio, Daniela; Wang, Lei; Wroblewski, Adrian; Nickl-Jockschat, Thomas |
medRxiv : the preprint server for health sciences |
38370846 |
2024 Feb 05 |
| The Scalable Variant Call Representation: Enabling Genetic Analysis Beyond One Million Genomes. |
Poterba, Timothy; Vittal, Christopher; King, Daniel; Goldstein, Daniel; Goldstein, Jacqueline I; Schultz, Patrick; Karczewski, Konrad J; Seed, Cotton; Neale, Benjamin M |
bioRxiv : the preprint server for biology |
38260295 |
2024 Jan 10 |
| A robust brain network for sustained attention from adolescence to adulthood that predicts later substance use. |
Weng, Yihe; Kruschwitz, Johann; Rueda-Delgado, Laura M; Ruddy, Kathy; Boyle, Rory; Franzen, Luisa; Serin, Emin; Nweze, Tochukwu; Hanson, Jamie; Smyth, Alannah; Farnan, Tom; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; McGrath, Jane; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Holz, Nathalie; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Schumann, Gunter; Walter, Henrik; Whelan, Robert; IMAGEN Consortium |
bioRxiv : the preprint server for biology |
38617224 |
2024 Jun 17 |
| Whole genome sequencing based analysis of inflammation biomarkers in the Trans-Omics for Precision Medicine (TOPMed) consortium. |
Jiang, Min-Zhi; Gaynor, Sheila M; Li, Xihao; Van Buren, Eric; Stilp, Adrienne; Buth, Erin; Wang, Fei Fei; Manansala, Regina; Gogarten, Stephanie M; Li, Zilin; Polfus, Linda M; Salimi, Shabnam; Bis, Joshua C; Pankratz, Nathan; Yanek, Lisa R; Durda, Peter; Tracy, Russell P; Rich, Stephen S; Rotter, Jerome I; Mitchell, Braxton D; Lewis, Joshua P; Psaty, Bruce M; Pratte, Katherine A; Silverman, Edwin K; Kaplan, Robert C; Avery, Christy; North, Kari E; Mathias, Rasika A; Faraday, Nauder; Lin, Honghuang; Wang, Biqi; Carson, April P; Norwood, Arnita F; Gibbs, Richard A; Kooperberg, Charles; Lundin, Jessica; Peters, Ulrike; Dupuis, Josée; Hou, Lifang; Fornage, Myriam; Benjamin, Emelia J; Reiner, Alexander P; Bowler, Russell P; Lin, Xihong; Auer, Paul L; Raffield, Laura M; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Inflammation Working Group |
Human molecular genetics |
38747556 |
2024 Aug 06 |
| Serving Up FLAN. A Food Literacy and Nutrition Intervention to Fend Off Food Insecurity. |
Royer, Michael F; Hauser, Michelle E; Zamora, Astrid N; Campero, Maria Ines; Garcia, Dulce; Gabaray, Martha; Sheats, Jylana L; King, Abby C |
Research square |
38766254 |
2024 May 07 |
| Shared etiology of Mendelian and complex disease supports drug discovery. |
Lalagkas, Panagiotis N; Melamed, Rachel D |
BMC medical genomics |
39256819 |
2024 Sep 10 |
| Pangenome graph construction from genome alignments with Minigraph-Cactus. |
Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M; Eizenga, Jordan M; Gao, Yan; Human Pangenome Reference Consortium; Marschall, Tobias; Li, Heng; Paten, Benedict |
Nature biotechnology |
37165083 |
2024 Apr |
| Genotype-specific spinal cord damage in spinocerebellar ataxias: an ENIGMA-Ataxia study. |
Rezende, Thiago Junqueira Ribeiro; Adanyaguh, Isaac; Barsottini, Orlando G P; Bender, Benjamin; Cendes, Fernando; Coutinho, Leo; Deistung, Andreas; Dogan, Imis; Durr, Alexandra; Fernandez-Ruiz, Juan; Göricke, Sophia L; Grisoli, Marina; Hernandez-Castillo, Carlos R; Lenglet, Christophe; Mariotti, Caterina; Martinez, Alberto R M; Massuyama, Breno K; Mochel, Fanny; Nanetti, Lorenzo; Nigri, Anna; Ono, Sergio E; Öz, Gülin; Pedroso, José Luiz; Reetz, Kathrin; Synofzik, Matthis; Teive, Helio; Thomopoulos, Sophia I; Thompson, Paul M; Timmann, Dagmar; van de Warrenburg, Bart P C; van Gaalen, Judith; França Jr, Marcondes C; Harding, Ian H |
Journal of neurology, neurosurgery, and psychiatry |
38383154 |
2024 Jun 17 |
| Pro-SMP finder-A systematic approach for discovering small membrane proteins in prokaryotes. |
Hoffman, Tara; Kinne, Jeff; Cho, Kyu Hong |
PloS one |
38422081 |
2024 |
| Gray matter covariations in autism: out-of-sample replication using the ENIGMA autism cohort. |
Mei, Ting; Llera, Alberto; Forde, Natalie J; van Rooij, Daan; Floris, Dorothea L; Beckmann, Christian F; Buitelaar, Jan K |
Molecular autism |
38229192 |
2024 Jan 17 |
| Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability. |
Schmilovich, Zoe; Bourque, Vincent-Raphaël; Douard, Elise; Huguet, Guillaume; Poulain, Cécile; Ross, Jay P; Alipour, Paria; Castonguay, Charles-Étienne; Younis, Nadine; Jean-Louis, Martineau; Saci, Zohra; Pausova, Zdenka; Paus, Tomas; Schuman, Gunter; Porteous, David; Davies, Gail; Redmond, Paul; Harris, Sarah E; Deary, Ian J; Whalley, Heather; Hayward, Caroline; Dion, Patrick A; Jacquemont, Sébastien; Rouleau, Guy A |
Frontiers in psychiatry |
38751416 |
2024 |
| Shared genetics between breast cancer and predisposing diseases identifies novel breast cancer treatment candidates. |
Lalagkas, Panagiotis N; Melamed, Rachel D |
Research square |
38947022 |
2024 Jun 21 |
| Family history as the strongest predictor of aortic and peripheral aneurysms in patients with intracranial aneurysms. |
Lai, Pui Man Rosalind; Akama-Garren, Elliot; Can, Anil; Tirado, Selena-Rae; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia |
38870642 |
2024 Aug |
| Regional patterns of human cortex development correlate with underlying neurobiology. |
Lotter, Leon D; Saberi, Amin; Hansen, Justine Y; Misic, Bratislav; Paquola, Casey; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium; Nees, Frauke; Banaschewski, Tobias; Eickhoff, Simon B; Dukart, Juergen |
Nature communications |
39284858 |
2024 Sep 12 |
| Modeling longitudinal data using matrix completion. |
Kidziński, Łukasz; Hastie, Trevor |
Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America |
38993268 |
2024 |
| Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts. |
Hemforth, Lisa; Couvy-Duchesne, Baptiste; De Matos, Kevin; Brianceau, Camille; Joulot, Matthieu; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos, Dimitri; Lemaitre, Herve; Paus, Tomas; Poustka, Luise; Hohman, Sarah; Holz, Nathalie; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Büchel, Christian; Poline, J B; Itterman, Bernd; Frouin, Vincent; Martin, Alexandre; IMAGEN study group; Cury, Claire; Colliot, Olivier |
ArXiv |
39148932 |
2024 Aug 05 |
| Adolescent to young adult longitudinal development of subcortical volumes in two European sites with four waves. |
Backhausen, Lea L; Fröhner, Juliane H; Lemaître, Hervé; Artiges, Eric; Martinot, Marie-Laure Palillère; Herting, Megan M; Sticca, Fabio; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Robinson, Lauren; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; Smolka, Michael N; Vetter, Nora C; IMAGEN Consortium |
Human brain mapping |
38401132 |
2024 Feb 15 |
| Source-based morphometry reveals structural brain pattern abnormalities in 22q11.2 deletion syndrome. |
Ge, Ruiyang; Ching, Christopher R K; Bassett, Anne S; Kushan, Leila; Antshel, Kevin M; van Amelsvoort, Therese; Bakker, Geor; Butcher, Nancy J; Campbell, Linda E; Chow, Eva W C; Craig, Michael; Crossley, Nicolas A; Cunningham, Adam; Daly, Eileen; Doherty, Joanne L; Durdle, Courtney A; Emanuel, Beverly S; Fiksinski, Ania; Forsyth, Jennifer K; Fremont, Wanda; Goodrich-Hunsaker, Naomi J; Gudbrandsen, Maria; Gur, Raquel E; Jalbrzikowski, Maria; Kates, Wendy R; Lin, Amy; Linden, David E J; McCabe, Kathryn L; McDonald-McGinn, Donna; Moss, Hayley; Murphy, Declan G; Murphy, Kieran C; Owen, Michael J; Villalon-Reina, Julio E; Repetto, Gabriela M; Roalf, David R; Ruparel, Kosha; Schmitt, J Eric; Schuite-Koops, Sanne; Angkustsiri, Kathleen; Sun, Daqiang; Vajdi, Ariana; van den Bree, Marianne; Vorstman, Jacob; Thompson, Paul M; Vila-Rodriguez, Fidel; Bearden, Carrie E |
Human brain mapping |
38224541 |
2024 Jan |
| Influence of insulin sensitivity on food cue evoked functional brain connectivity in children. |
Semeia, Lorenzo; Veit, Ralf; Zhao, Sixiu; Luo, Shan; Angelo, Brendan; Birkenfeld, Andreas L; Preissl, Hubert; Xiang, Anny H; Kullmann, Stephanie; Page, Kathleen A |
bioRxiv : the preprint server for biology |
38405878 |
2024 Feb 15 |
| A global multicohort study to map subcortical brain development and cognition in infancy and early childhood. |
Alex, Ann M; Aguate, Fernando; Botteron, Kelly; Buss, Claudia; Chong, Yap-Seng; Dager, Stephen R; Donald, Kirsten A; Entringer, Sonja; Fair, Damien A; Fortier, Marielle V; Gaab, Nadine; Gilmore, John H; Girault, Jessica B; Graham, Alice M; Groenewold, Nynke A; Hazlett, Heather; Lin, Weili; Meaney, Michael J; Piven, Joseph; Qiu, Anqi; Rasmussen, Jerod M; Roos, Annerine; Schultz, Robert T; Skeide, Michael A; Stein, Dan J; Styner, Martin; Thompson, Paul M; Turesky, Ted K; Wadhwa, Pathik D; Zar, Heather J; Zöllei, Lilla; de Los Campos, Gustavo; Knickmeyer, Rebecca C; ENIGMA ORIGINs group |
Nature neuroscience |
37996530 |
2024 Jan |
| Targeted degrader technologies as prospective SARS-CoV-2 therapies. |
Khurshid, Rabia; Schulz, Joseph M; Hu, Jiaming; Snowden, Timothy S; Reynolds, Robert C; Schürer, Stephan C |
Drug discovery today |
38029836 |
2024 Jan |
| Normative modelling of brain morphometry across the lifespan with CentileBrain: algorithm benchmarking and model optimisation. |
Ge, Ruiyang; Yu, Yuetong; Qi, Yi Xuan; Fan, Yu-Nan; Chen, Shiyu; Gao, Chuntong; Haas, Shalaila S; New, Faye; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Buckner, Randy; Caseras, Xavier; Crivello, Fabrice; Crone, Eveline A; Erk, Susanne; Fisher, Simon E; Franke, Barbara; Glahn, David C; Dannlowski, Udo; Grotegerd, Dominik; Gruber, Oliver; Hulshoff Pol, Hilleke E; Schumann, Gunter; Tamnes, Christian K; Walter, Henrik; Wierenga, Lara M; Jahanshad, Neda; Thompson, Paul M; Frangou, Sophia; ENIGMA Lifespan Working Group |
The Lancet. Digital health |
38395541 |
2024 Mar |
| Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. |
Orlic-Milacic, Marija; Rothfels, Karen; Matthews, Lisa; Wright, Adam; Jassal, Bijay; Shamovsky, Veronica; Trinh, Quang; Gillespie, Marc E; Sevilla, Cristoffer; Tiwari, Krishna; Ragueneau, Eliot; Gong, Chuqiao; Stephan, Ralf; May, Bruce; Haw, Robin; Weiser, Joel; Beavers, Deidre; Conley, Patrick; Hermjakob, Henning; Stein, Lincoln D; D'Eustachio, Peter; Wu, Guanming |
Database : the journal of biological databases and curation |
38713862 |
2024 May 07 |
| Adolescent maturation of cortical excitation-inhibition balance based on individualized biophysical network modeling. |
Saberi, Amin; Wischnewski, Kevin J; Jung, Kyesam; Lotter, Leon D; Schaare, H Lina; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Poustka, Luise; Hohmann, Sarah; Holz, Nathalie; Baeuchl, Christian; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium; Paus, Tomáš; Dukart, Juergen; Bernhardt, Boris C; Popovych, Oleksandr V; Eickhoff, Simon B; Valk, Sofie L |
bioRxiv : the preprint server for biology |
38948771 |
2024 Jun 18 |
| Best practices for managing and disseminating resources and outreach and evaluating the impact of the IDG Consortium. |
Vidović, Dušica; Waller, Anna; Holmes, Jayme; Sklar, Larry A; Schürer, Stephan C |
Drug discovery today |
38508231 |
2024 May |
| Using rare genetic mutations to revisit structural brain asymmetry. |
Kopal, Jakub; Kumar, Kuldeep; Shafighi, Kimia; Saltoun, Karin; Modenato, Claudia; Moreau, Clara A; Huguet, Guillaume; Jean-Louis, Martineau; Martin, Charles-Olivier; Saci, Zohra; Younis, Nadine; Douard, Elise; Jizi, Khadije; Beauchamp-Chatel, Alexis; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Draganski, Bogdan; Sønderby, Ida E; Andreassen, Ole A; Glahn, David C; Thompson, Paul M; Bearden, Carrie E; Zatorre, Robert; Jacquemont, Sébastien; Bzdok, Danilo |
Nature communications |
38531844 |
2024 Mar 26 |
| Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. |
Jiang, Yuming; Rex, Devasahayam Arokia Balaya; Schuster, Dina; Neely, Benjamin A; Rosano, Germán L; Volkmar, Norbert; Momenzadeh, Amanda; Peters-Clarke, Trenton M; Egbert, Susan B; Kreimer, Simion; Doud, Emma H; Crook, Oliver M; Yadav, Amit Kumar; Vanuopadath, Muralidharan; Hegeman, Adrian D; Mayta, Martín L; Duboff, Anna G; Riley, Nicholas M; Moritz, Robert L; Meyer, Jesse G |
ACS measurement science au |
39193565 |
2024 Aug 21 |
| Personalized pangenome references. |
Sirén, Jouni; Eskandar, Parsa; Ungaro, Matteo Tommaso; Hickey, Glenn; Eizenga, Jordan M; Novak, Adam M; Chang, Xian; Chang, Pi-Chuan; Kolmogorov, Mikhail; Carroll, Andrew; Monlong, Jean; Paten, Benedict |
Nature methods |
39261641 |
2024 Sep 11 |
| Smaller total and subregional cerebellar volumes in posttraumatic stress disorder: a mega-analysis by the ENIGMA-PGC PTSD workgroup. |
Huggins, Ashley A; Baird, C Lexi; Briggs, Melvin; Laskowitz, Sarah; Hussain, Ahmed; Fouda, Samar; Haswell, Courtney; Sun, Delin; Salminen, Lauren E; Jahanshad, Neda; Thomopoulos, Sophia I; Veltman, Dick J; Frijling, Jessie L; Olff, Miranda; van Zuiden, Mirjam; Koch, Saskia B J; Nawjin, Laura; Wang, Li; Zhu, Ye; Li, Gen; Stein, Dan J; Ipser, Jonathan; Seedat, Soraya; du Plessis, Stefan; van den Heuvel, Leigh L; Suarez-Jimenez, Benjamin; Zhu, Xi; Kim, Yoojean; He, Xiaofu; Zilcha-Mano, Sigal; Lazarov, Amit; Neria, Yuval; Stevens, Jennifer S; Ressler, Kerry J; Jovanovic, Tanja; van Rooij, Sanne J H; Fani, Negar; Hudson, Anna R; Mueller, Sven C; Sierk, Anika; Manthey, Antje; Walter, Henrik; Daniels, Judith K; Schmahl, Christian; Herzog, Julia I; Říha, Pavel; Rektor, Ivan; Lebois, Lauren A M; Kaufman, Milissa L; Olson, Elizabeth A; Baker, Justin T; Rosso, Isabelle M; King, Anthony P; Liberzon, Isreal; Angstadt, Mike; Davenport, Nicholas D; Sponheim, Scott R; Disner, Seth G; Straube, Thomas; Hofmann, David; Qi, Rongfeng; Lu, Guang Ming; Baugh, Lee A; Forster, Gina L; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Fercho, Kelene A; Maron-Katz, Adi; Etkin, Amit; Cotton, Andrew S; O'Leary, Erin N; Xie, Hong; Wang, Xin; Quidé, Yann; El-Hage, Wissam; Lissek, Shmuel; Berg, Hannah; Bruce, Steven; Cisler, Josh; Ross, Marisa; Herringa, Ryan J; Grupe, Daniel W; Nitschke, Jack B; Davidson, Richard J; Larson, Christine L; deRoon-Cassini, Terri A; Tomas, Carissa W; Fitzgerald, Jacklynn M; Blackford, Jennifer Urbano; Olatunji, Bunmi O; Kremen, William S; Lyons, Michael J; Franz, Carol E; Gordon, Evan M; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Levy, Ifat; Harpaz-Rotem, Ilan; Krystal, John H; Dennis, Emily L; Tate, David F; Cifu, David X; Walker, William C; Wilde, Elizabeth A; Harding, Ian H; Kerestes, Rebecca; Thompson, Paul M; Morey, Rajendra |
Molecular psychiatry |
38195980 |
2024 Mar |
| Examining the association between posttraumatic stress disorder and disruptions in cortical networks identified using data-driven methods. |
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Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology |
38017161 |
2024 Feb |
| Kinome-Wide Virtual Screening by Multi-Task Deep Learning. |
Hu, Jiaming; Allen, Bryce K; Stathias, Vasileios; Ayad, Nagi G; Schürer, Stephan C |
International journal of molecular sciences |
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2024 Feb 22 |
| ReactomeGSA: new features to simplify public data reuse. |
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Bioinformatics (Oxford, England) |
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2024 Jun 03 |
| Prospector Heads: Generalized Feature Attribution for Large Models & Data. |
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ArXiv |
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2024 Jun 20 |
| Beyond the Global Brain Differences: Intraindividual Variability Differences in 1q21.1 Distal and 15q11.2 BP1-BP2 Deletion Carriers. |
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Biological psychiatry |
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2024 Jan 15 |
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| The 2023 Report on the Proteome from the HUPO Human Proteome Project. |
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| Seemingly unrelated regression empowers detection of network failure in dementia. |
Jahanshad, Neda; Nir, Talia M; Toga, Arthur W; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Neurobiology of aging. |
25257986 |
2015 Jan; |
| Empowering imaging biomarkers of Alzheimer's disease. |
Gutman, Boris A; Wang, Yalin; Yanovsky, Igor; Hua, Xue; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Neurobiology of aging. |
25260848 |
2015 Jan; |
| Genome-wide interaction analysis reveals replicated epistatic effects on brain structure. |
Hibar, Derrek P; Stein, Jason L; Jahanshad, Neda; Kohannim, Omid; Hua, Xue; Toga, Arthur W; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Alzheimer's Disease Neuroimaging Initiative; Weiner, Michael W; Thompson, Paul M |
Neurobiology of aging. |
25264344 |
2015 Jan; |
| Brain connectivity and novel network measures for Alzheimer's disease classification. |
Prasad, Gautam; Joshi, Shantanu H; Nir, Talia M; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
25264345 |
2015 Jan; |
| Introduction to SMART designs for the development of adaptive interventions: with application to weight loss research. |
Almirall, Daniel; Nahum-Shani, Inbal; Sherwood, Nancy E; Murphy, Susan A |
Translational behavioral medicine. |
25264466 |
2014 Sep; |
| The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. |
Wilks, Christopher; Cline, Melissa S; Weiler, Erich; Diehkans, Mark; Craft, Brian; Martin, Christy; Murphy, Daniel; Pierce, Howdy; Black, John; Nelson, Donavan; Litzinger, Brian; Hatton, Thomas; Maltbie, Lori; Ainsworth, Michael; Allen, Patrick; Rosewood, Linda; Mitchell, Elizabeth; Smith, Bradley; Warner, Jim; Groboske, John; Telc, Haifang; Wilson, Daniel; Sanford, Brian; Schmidt, Hannes; Haussler, David; Maltbie, Daniel |
Database : the journal of biological databases and curation. |
25267794 |
2014; |
| Alignathon: a competitive assessment of whole-genome alignment methods. |
Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir; Raney, Brian J; Clawson, Hiram; Kim, Jaebum; Kemena, Carsten; Chang, Jia-Ming; Erb, Ionas; Poliakov, Alexander; Hou, Minmei; Herrero, Javier; Kent, William James; Solovyev, Victor; Darling, Aaron E; Ma, Jian; Notredame, Cedric; Brudno, Michael; Dubchak, Inna; Haussler, David; Paten, Benedict |
Genome research. |
25273068 |
2014 Dec; |
| An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. |
Jacobs, Frank M J; Greenberg, David; Nguyen, Ngan; Haeussler, Maximilian; Ewing, Adam D; Katzman, Sol; Paten, Benedict; Salama, Sofie R; Haussler, David |
Nature. |
25274305 |
2014 Dec 11; |
| Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease. |
Ashbrook, David G; Williams, Robert W; Lu, Lu; Stein, Jason L; Hibar, Derrek P; Nichols, Thomas E; Medland, Sarah E; Thompson, Paul M; Hager, Reinmar |
BMC genomics. |
25280473 |
2014 Oct 03; |
| Studying ventricular abnormalities in mild cognitive impairment with hyperbolic Ricci flow and tensor-based morphometry. |
Shi, Jie; Stonnington, Cynthia M; Thompson, Paul M; Chen, Kewei; Gutman, Boris; Reschke, Cole; Baxter, Leslie C; Reiman, Eric M; Caselli, Richard J; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
25285374 |
2015 Jan 01; |
| A randomized controlled trial to evaluate the safety and efficacy of cardiac contractility modulation in patients with moderately reduced left ventricular ejection fraction and a narrow QRS duration: study rationale and design. |
Abraham, William T; Lindenfeld, JoAnn; Reddy, Vivek Y; Hasenfuss, Gerd; Kuck, Karl-Heinz; Boscardin, John; Gibbons, Robert; Burkhoff, Daniel; FIX-HF-5C Investigators and Coordinators |
Journal of cardiac failure. |
25285748 |
2015 Jan; |
| Simulation studies as designed experiments: the comparison of penalized regression models in the ''large p, small n'' setting. |
Chaibub Neto, Elias; Bare, J Christopher; Margolin, Adam A |
PloS one. |
25289666 |
2014; |
| Structural abnormality of the corticospinal tract in major depressive disorder. |
Sacchet, Matthew D; Prasad, Gautam; Foland-Ross, Lara C; Joshi, Shantanu H; Hamilton, J Paul; Thompson, Paul M; Gotlib, Ian H |
Biology of mood & anxiety disorders. |
25295159 |
2014; |
| Mapping ventricular expansion onto cortical gray matter in older adults. |
Madsen, Sarah K; Gutman, Boris A; Joshi, Shantanu H; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
25311280 |
2015 Jan; |
| Toward better benchmarking: challenge-based methods assessment in cancer genomics. |
Boutros, Paul C; Margolin, Adam A; Stuart, Joshua M; Califano, Andrea; Stolovitzky, Gustavo |
Genome biology. |
25314947 |
2014 Sep 17; |
| Pleiotropic locus for emotion recognition and amygdala volume identified using univariate and bivariate linkage. |
Knowles, Emma E M; McKay, D Reese; Kent Jr, Jack W; Sprooten, Emma; Carless, Melanie A; Curran, Joanne E; de Almeida, Marcio A A; Dyer, Thomas D; Göring, Harald H H; Olvera, Rene L; Duggirala, Ravi; Fox, Peter T; Almasy, Laura; Blangero, John; Glahn, David C |
The American journal of psychiatry. |
25322361 |
2015 Feb 1; |
| Navigating protected genomics data with UCSC Genome Browser in a Box. |
Haeussler, Maximilian; Raney, Brian J; Hinrichs, Angie S; Clawson, Hiram; Zweig, Ann S; Karolchik, Donna; Casper, Jonathan; Speir, Matthew L; Haussler, David; Kent, W James |
Bioinformatics (Oxford, England). |
25348212 |
2015 Mar 01; |
| Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis. |
Benyamin, Beben; Esko, Tonu; Ried, Janina S; Radhakrishnan, Aparna; Vermeulen, Sita H; Traglia, Michela; Gögele, Martin; Anderson, Denise; Broer, Linda; Podmore, Clara; Luan, Jian'an; Kutalik, Zoltan; Sanna, Serena; van der Meer, Peter; Tanaka, Toshiko; Wang, Fudi; Westra, Harm-Jan; Franke, Lude; Mihailov, Evelin; Milani, Lili; Hälldin, Jonas; Häldin, Jonas; Winkelmann, Juliane; Meitinger, Thomas; Thiery, Joachim; Peters, Annette; Waldenberger, Melanie; Rendon, Augusto; Jolley, Jennifer; Sambrook, Jennifer; Kiemeney, Lambertus A; Sweep, Fred C; Sala, Cinzia F; Schwienbacher, Christine; Pichler, Irene; Hui, Jennie; Demirkan, Ayse; Isaacs, Aaron; Amin, Najaf; Steri, Maristella; Waeber, Gérard; Verweij, Niek; Powell, Joseph E; Nyholt, Dale R; Heath, Andrew C; Madden, Pamela A F; Visscher, Peter M; Wright, Margaret J; Montgomery, Grant W; Martin, Nicholas G; Hernandez, Dena; Bandinelli, Stefania; van der Harst, Pim; Uda, Manuela; Vollenweider, Peter; Scott, Robert A; Langenberg, Claudia; Wareham, Nicholas J; InterAct Consortium; van Duijn, Cornelia; Beilby, John; Pramstaller, Peter P; Hicks, Andrew A; Ouwehand, Willem H; Oexle, Konrad; Gieger, Christian; Metspalu, Andres; Camaschella, Clara; Toniolo, Daniela; Swinkels, Dorine W; Whitfield, John B |
Nature communications. |
25352340 |
2014 Oct 29; |
| Dynamic treatment regimes: technical challenges and applications. |
Laber, Eric B; Lizotte, Daniel J; Qian, Min; Pelham, William E; Murphy, Susan A |
Electronic journal of statistics. |
25356091 |
2014; |
| Thalamic alterations in preterm neonates and their relation to ventral striatum disturbances revealed by a combined shape and pose analysis. |
Lao, Yi; Wang, Yalin; Shi, Jie; Ceschin, Rafael; Nelson, Marvin D; Panigrahy, Ashok; Leporé, Natasha |
Brain structure & function. |
25366970 |
2016 Jan; |
| Associations between depression and anxiety symptoms and retinal vessel caliber in adolescents and young adults. |
Meier, Madeline H; Gillespie, Nathan A; Hansell, Narelle K; Hewitt, Alex W; Hickie, Ian B; Lu, Yi; MacGregor, Stuart; Medland, Sarah E; Sun, Cong; Wong, Tien Y; Wright, Margaret J; Zhu, Gu; Martin, Nicholas G; Mackey, David A |
Psychosomatic medicine. |
25373892 |
2014 Nov-Dec; |
| The UCSC Cancer Genomics Browser: update 2015. |
Goldman, Mary; Craft, Brian; Swatloski, Teresa; Cline, Melissa; Morozova, Olena; Diekhans, Mark; Haussler, David; Zhu, Jingchun |
Nucleic acids research. |
25392408 |
2015 Jan; |
| A Comparison of Methamphetamine Users to a Matched NHANES Cohort: Propensity Score Analyses for Oral Health Care and Dental Service Need. |
Murphy, Debra A; Harrell, Lauren; Fintzy, Rachel; Belin, Thomas R; Gutierrez, Alexis; Vitero, Steven J; Shetty, Vivek |
The journal of behavioral health services & research. |
25398257 |
2016 Oct; |
| Dynamic Treatment Regimes. |
Chakraborty, Bibhas; Murphy, Susan A |
Annual review of statistics and its application. |
25401119 |
2014; |
| RADIA: RNA and DNA integrated analysis for somatic mutation detection. |
Radenbaugh, Amie J; Ma, Singer; Ewing, Adam; Stuart, Joshua M; Collisson, Eric A; Zhu, Jingchun; Haussler, David |
PloS one. |
25405470 |
2014; |
| Connectopathy in ageing and dementia. |
Toga, Arthur W; Thompson, Paul M |
Brain : a journal of neurology. |
25413934 |
2014 Dec; |
| Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline. |
Slagel, Joseph; Mendoza, Luis; Shteynberg, David; Deutsch, Eric W; Moritz, Robert L |
Molecular & cellular proteomics : MCP. |
25418363 |
2015 Feb; |
| Altered white matter microstructure is associated with social cognition and psychotic symptoms in 22q11.2 microdeletion syndrome. |
Jalbrzikowski, Maria; Villalon-Reina, Julio E; Karlsgodt, Katherine H; Senturk, Damla; Chow, Carolyn; Thompson, Paul M; Bearden, Carrie E |
Frontiers in behavioral neuroscience. |
25426042 |
2014; |
| Comparative Effectiveness Research: A Roadmap for Physical Activity and Lifestyle. |
Jakicic, John M; Sox, Harold; Blair, Steven N; Bensink, Mark; Johnson, William G; King, Abby C; Lee, I-Min; Nahum-Shani, Inbal; Sallis, James F; Sallis, Robert E; Craft, Lynette; Whitehead, James R; Ainsworth, Barbara E |
Medicine and science in sports and exercise. |
25426735 |
2015 Aug; |
| The UCSC Genome Browser database: 2015 update. |
Rosenbloom, Kate R; Armstrong, Joel; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R; Fujita, Pauline A; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T; Li, Chin H; Miga, Karen H; Nguyen, Ngan; Paten, Benedict; Raney, Brian J; Smit, Arian F A; Speir, Matthew L; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James |
Nucleic acids research. |
25428374 |
2015 Jan; |
| Occipital sources of resting-state alpha rhythms are related to local gray matter density in subjects with amnesic mild cognitive impairment and Alzheimer's disease. |
Babiloni, Claudio; Del Percio, Claudio; Boccardi, Marina; Lizio, Roberta; Lopez, Susanna; Carducci, Filippo; Marzano, Nicola; Soricelli, Andrea; Ferri, Raffaele; Triggiani, Antonio Ivano; Prestia, Annapaola; Salinari, Serenella; Rasser, Paul E; Basar, Erol; Famà, Francesco; Nobili, Flavio; Yener, Görsev; Emek-Sava?, Derya Durusu; Gesualdo, Loreto; Mundi, Ciro; Thompson, Paul M; Rossini, Paolo M; Frisoni, Giovanni B |
Neurobiology of aging. |
25442118 |
2015 Feb; |
| Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease. |
Nir, Talia M; Villalon-Reina, Julio E; Prasad, Gautam; Jahanshad, Neda; Joshi, Shantanu H; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
25444597 |
2015 Jan; |
| Does MRI scan acceleration affect power to track brain change? |
Ching, Christopher R K; Hua, Xue; Hibar, Derrek P; Ward, Chadwick P; Gunter, Jeffrey L; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Neurobiology of aging. |
25444601 |
2015 Jan; |
| Connectivity network measures predict volumetric atrophy in mild cognitive impairment. |
Nir, Talia M; Jahanshad, Neda; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
25444606 |
2015 Jan; |
| Higher homocysteine associated with thinner cortical gray matter in 803 participants from the Alzheimer's Disease Neuroimaging Initiative. |
Madsen, Sarah K; Rajagopalan, Priya; Joshi, Shantanu H; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
25444607 |
2015 Jan; |
| The effect of reverse remodeling on long-term survival in mildly symptomatic patients with heart failure receiving cardiac resynchronization therapy: results of the REVERSE study. |
Gold, Michael R; Daubert, Claude; Abraham, William T; Ghio, Stefano; St John Sutton, Martin; Hudnall, John Harrison; Cerkvenik, Jeffrey; Linde, Cecilia |
Heart rhythm. |
25460860 |
2015 Mar; |
| Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement. |
Leung, Kelvin K; Malone, Ian M; Ourselin, Sebastien; Gunter, Jeffrey L; Bernstein, Matt A; Thompson, Paul M; Jack Jr, Clifford R; Weiner, Michael W; Fox, Nick C; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
25481794 |
2015 Feb 15; |
| Partial volume correction in quantitative amyloid imaging. |
Su, Yi; Blazey, Tyler M; Snyder, Abraham Z; Raichle, Marcus E; Marcus, Daniel S; Ances, Beau M; Bateman, Randall J; Cairns, Nigel J; Aldea, Patricia; Cash, Lisa; Christensen, Jon J; Friedrichsen, Karl; Hornbeck, Russ C; Farrar, Angela M; Owen, Christopher J; Mayeux, Richard; Brickman, Adam M; Klunk, William; Price, Julie C; Thompson, Paul M; Ghetti, Bernadino; Saykin, Andrew J; Sperling, Reisa A; Johnson, Keith A; Schofield, Peter R; Buckles, Virginia; Morris, John C; Benzinger, Tammie L S; Dominantly Inherited Alzheimer Network |
NeuroImage. |
25485714 |
2015 Feb 15; |
| Carriers of a common variant in the dopamine transporter gene have greater dementia risk, cognitive decline, and faster ventricular expansion. |
Roussotte, Florence F; Gutman, Boris A; Hibar, Derrek P; Madsen, Sarah K; Narr, Katherine L; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Alzheimer's & dementia : the journal of the Alzheimer's Association. |
25496873 |
2015 Oct; |
| Genetics of microstructure of the corpus callosum in older adults. |
Kanchibhotla, Sri C; Mather, Karen A; Thalamuthu, Anbupalam; Zhuang, Lin; Schofield, Peter R; Kwok, John B J; Ames, David; Wright, Margaret J; Trollor, Julian N; Wen, Wei; Sachdev, Perminder S |
PloS one. |
25514436 |
2014; |
| Identifying Drug (Cocaine) Intake Events from Acute Physiological Response in the Presence of Free-living Physical Activity. |
Hossain, Syed Monowar; Ali, Amin Ahsan; Rahman, Mahbubur; Ertin, Emre; Epstein, David; Kennedy, Ashley; Preston, Kenzie; Umbricht, Annie; Chen, Yixin; Kumar, Santosh |
IPSN : [proceedings]. IPSN (Conference). |
25531010 |
2014; |
| Heart failure and respiratory hospitalizations are reduced in patients with heart failure and chronic obstructive pulmonary disease with the use of an implantable pulmonary artery pressure monitoring device. |
Krahnke, Jason S; Abraham, William T; Adamson, Philip B; Bourge, Robert C; Bauman, Jordan; Ginn, Greg; Martinez, Fernando J; Criner, Gerard J; Champion Trial Study Group |
Journal of cardiac failure. |
25541376 |
2015 Mar; |
| Stratifying patients at the risk of heart failure hospitalization using existing device diagnostic thresholds. |
Sharma, Vinod; Rathman, Lisa D; Small, Roy S; Whellan, David J; Koehler, Jodi; Warman, Eduardo; Abraham, William T |
Heart & lung : the journal of critical care. |
25543319 |
2015 Mar-Apr; |
| Abnormal hippocampal morphology in dissociative identity disorder and post-traumatic stress disorder correlates with childhood trauma and dissociative symptoms. |
Chalavi, Sima; Vissia, Eline M; Giesen, Mechteld E; Nijenhuis, Ellert R S; Draijer, Nel; Cole, James H; Dazzan, Paola; Pariante, Carmine M; Madsen, Sarah K; Rajagopalan, Priya; Thompson, Paul M; Toga, Arthur W; Veltman, Dick J; Reinders, Antje A T S |
Human brain mapping. |
25545784 |
2015 May; |
| Low plasma ApoE levels are associated with smaller hippocampal size in the Alzheimer's disease neuroimaging initiative cohort. |
Teng, Edmond; Chow, Nicole; Hwang, Kristy S; Thompson, Paul M; Gylys, Karen H; Cole, Gregory M; Jack Jr, Clifford R; Shaw, Leslie M; Trojanowski, John Q; Soares, Holly D; Weiner, Michael W; Apostolova, Liana G; Alzheimer?s Disease Neuroimaging Initiative |
Dementia and geriatric cognitive disorders. |
25547651 |
2014 Dec 24; |
| Impact of family structure and common environment on heritability estimation for neuroimaging genetics studies using Sequential Oligogenic Linkage Analysis Routines. |
Koran, Mary Ellen; Thornton-Wells, Tricia A; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Blangero, John; Nichols, Thomas E; Kochunov, Peter; Landman, Bennett A |
Journal of medical imaging (Bellingham, Wash.). |
25558465 |
2014 Jun 27; |
| Abnormalities in cortical gray matter density in borderline personality disorder. |
Rossi, R; Lanfredi, M; Pievani, M; Boccardi, M; Rasser, P E; Thompson, P M; Cavedo, E; Cotelli, M; Rosini, S; Beneduce, R; Bignotti, S; Magni, L R; Rillosi, L; Magnaldi, S; Cobelli, M; Rossi, G; Frisoni, G B |
European psychiatry : the journal of the Association of European Psychiatrists. |
25561291 |
2015 Feb; |
| Building a pan-genome reference for a population. |
Nguyen, Ngan; Hickey, Glenn; Zerbino, Daniel R; Raney, Brian; Earl, Dent; Armstrong, Joel; Kent, W James; Haussler, David; Paten, Benedict |
Journal of computational biology : a journal of computational molecular cell biology. |
25565268 |
2015 May; |
| Mechanisms and clinical consequences of untreated central sleep apnea in heart failure. |
Costanzo, Maria Rosa; Khayat, Rami; Ponikowski, Piotr; Augostini, Ralph; Stellbrink, Christoph; Mianulli, Marcus; Abraham, William T |
Journal of the American College of Cardiology. |
25572513 |
2015 Jan 06; |
| Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming. |
Kim, Daniel H; Marinov, Georgi K; Pepke, Shirley; Singer, Zakary S; He, Peng; Williams, Brian; Schroth, Gary P; Elowitz, Michael B; Wold, Barbara J |
Cell stem cell. |
25575081 |
2015 Jan 8; |
| Development of an online, publicly accessible naive Bayesian decision support tool for mammographic mass lesions based on the American College of Radiology (ACR) BI-RADS lexicon. |
Benndorf, Matthias; Kotter, Elmar; Langer, Mathias; Herda, Christoph; Wu, Yirong; Burnside, Elizabeth S |
European radiology. |
25576230 |
2015 Jun; |
| Multivariate General Linear Models (MGLM) on Riemannian Manifolds with Applications to Statistical Analysis of Diffusion Weighted Images. |
Kim, Hyunwoo J; Adluru, Nagesh; Collins, Maxwell D; Chung, Moo K; Bendlin, Barbara B; Johnson, Sterling C; Davidson, Richard J; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
25580070 |
2014 Jun 23; |
| CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. |
Chikina, Maria; Zaslavsky, Elena; Sealfon, Stuart C |
Bioinformatics (Oxford, England). |
25583121 |
2015 May 15; |
| Stepwise group sparse regression (SGSR): gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors. |
Jang, In Sock; Dienstmann, Rodrigo; Margolin, Adam A; Guinney, Justin |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
25592566 |
2015; |
| T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes. |
Huang, Grace T; Tsamardinos, Ioannis; Raghu, Vineet; Kaminski, Naftali; Benos, Panayiotis V |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
25592602 |
2015; |
| Common genetic variants influence human subcortical brain structures. |
Hibar, Derrek P (see original citation for additional authors) |
Nature. |
25607358 |
2015 Apr 09; |
| Investigating the genetics of hippocampal volume in older adults without dementia. |
Mather, Karen A; Armstrong, Nicola J; Wen, Wei; Kwok, John B; Assareh, Amelia A; Thalamuthu, Anbupalam; Reppermund, Simone; Duesing, Konsta; Wright, Margaret J; Ames, David; Trollor, Julian N; Brodaty, Henry; Schofield, Peter R; Sachdev, Perminder S |
PloS one. |
25625606 |
2015; |
| Design and protocol of a randomized multiple behavior change trial: Make Better Choices 2 (MBC2). |
Pellegrini, Christine A; Steglitz, Jeremy; Johnston, Winter; Warnick, Jennifer; Adams, Tiara; McFadden, H G; Siddique, Juned; Hedeker, Donald; Spring, Bonnie |
Contemporary clinical trials. |
25625810 |
2015 Mar; |
| Genomic structural variants are linked with intellectual disability. |
Bulayeva, Kazima; Lesch, Klaus-Peter; Bulayev, Oleg; Walsh, Christopher; Glatt, Stephen; Gurgenova, Farida; Omarova, Jamilja; Berdichevets, Irina; Thompson, Paul M |
Journal of neural transmission (Vienna, Austria : 1996). |
25626716 |
2015 Sep; |
| Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. |
Deutsch, Eric W; Mendoza, Luis; Shteynberg, David; Slagel, Joseph; Sun, Zhi; Moritz, Robert L |
Proteomics. Clinical applications. |
25631240 |
2015 Aug; |
| Detecting and targetting oncogenic fusion proteins in the genomic era. |
Davare, Monika A; Tognon, Cristina E |
Biology of the cell. |
25631473 |
2015 May; |
| Social embeddedness in an online weight management programme is linked to greater weight loss. |
Poncela-Casasnovas, Julia; Spring, Bonnie; McClary, Daniel; Moller, Arlen C; Mukogo, Rufaro; Pellegrini, Christine A; Coons, Michael J; Davidson, Miriam; Mukherjee, Satyam; Nunes Amaral, Luis A |
Journal of the Royal Society, Interface. |
25631561 |
2015 Mar 6; |
| Sleep disordered breathing and post-discharge mortality in patients with acute heart failure. |
Khayat, Rami; Jarjoura, David; Porter, Kyle; Sow, Angela; Wannemacher, Jacob; Dohar, Robert; Pleister, Adam; Abraham, William T |
European heart journal. |
25636743 |
2015 Jun 14; |
| Prevalence of metabolic syndrome and its association with physical capacity, disability, and self-rated health in Lifestyle Interventions and Independence for Elders Study participants. |
Botoseneanu, Anda; Ambrosius, Walter T; Beavers, Daniel P; de Rekeneire, Nathalie; Anton, Stephen; Church, Timothy; Folta, Sara C; Goodpaster, Bret H; King, Abby C; Nicklas, Barbara J; Spring, Bonnie; Wang, Xuewen; Gill, Thomas M; LIFE Study Groups |
Journal of the American Geriatrics Society. |
25645664 |
2015 Feb; |
| Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry. |
Shi, Jie; Collignon, Olivier; Xu, Liang; Wang, Gang; Kang, Yue; Leporé, Franco; Lao, Yi; Joshi, Anand A; Leporé, Natasha; Wang, Yalin |
Neuroinformatics. |
25649876 |
2015 Jul; |
| Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors. |
Dienstmann, Rodrigo; Jang, In Sock; Bot, Brian; Friend, Stephen; Guinney, Justin |
Cancer discovery. |
25656898 |
2015 Feb; |
| Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note. |
Steglitz, Jeremy; Sommers, Mary; Talen, Mary R; Thornton, Louise K; Spring, Bonnie |
Journal of the American Medical Informatics Association : JAMIA. |
25665700 |
2015 Jul; |
| Gene interactions and structural brain change in early-onset Alzheimer's disease subjects using the pipeline environment. |
Moon, Seok Woo; Dinov, Ivo D; Zamanyan, Alen; Shi, Ran; Genco, Alex; Hobel, Sam; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Psychiatry investigation. |
25670955 |
2015 Jan; |
| Frontal and striatal alterations associated with psychopathic traits in adolescents. |
Yang, Yaling; Narr, Katherine L; Baker, Laura A; Joshi, Shantanu H; Jahanshad, Neda; Raine, Adrian; Thompson, Paul M |
Psychiatry research. |
25676553 |
2015 Mar 30; |
| Association of BNP and Troponin Levels with Outcome among Cardiac Resynchronization Therapy Recipients. |
Shalaby, Alaa A; Abraham, William T; Fonarow, Gregg C; Bersohn, Malcolm M; Gorcsan 3rd, John; Lee, Li-Yin; Halilovic, Jasmina; Saba, Samir; Maisel, Alan; Singh, Jagmeet P; Sonel, Ali; Kadish, Alan |
Pacing and clinical electrophysiology : PACE. |
25677851 |
2015 May; |
| Evolutionary signatures amongst disease genes permit novel methods for gene prioritization and construction of informative gene-based networks. |
Priedigkeit, Nolan; Wolfe, Nicholas; Clark, Nathan L |
PLoS genetics. |
25679399 |
2015 Feb; |
| Improved data analysis for the MinION nanopore sequencer. |
Jain, Miten; Fiddes, Ian T; Miga, Karen H; Olsen, Hugh E; Paten, Benedict; Akeson, Mark |
Nature methods. |
25686389 |
2015 Apr; |
| The Genome 10K Project: a way forward. |
Koepfli, Klaus-Peter; Paten, Benedict; Genome 10K Community of Scientists; O'Brien, Stephen J |
Annual review of animal biosciences. |
25689317 |
2015; |
| Integrative analysis of 111 reference human epigenomes. |
Roadmap Epigenomics Consortium; Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J; Amin, Viren; Whitaker, John W; Schultz, Matthew D; Ward, Lucas D; Sarkar, Abhishek; Quon, Gerald; Sandstrom, Richard S; Eaton, Matthew L; Wu, Yi-Chieh; Pfenning, Andreas R; Wang, Xinchen; Claussnitzer, Melina; Liu, Yaping; Coarfa, Cristian; Harris, R Alan; Shoresh, Noam; Epstein, Charles B; Gjoneska, Elizabeta; Leung, Danny; Xie, Wei; Hawkins, R David; Lister, Ryan; Hong, Chibo; Gascard, Philippe; Mungall, Andrew J; Moore, Richard; Chuah, Eric; Tam, Angela; Canfield, Theresa K; Hansen, R Scott; Kaul, Rajinder; Sabo, Peter J; Bansal, Mukul S; Carles, Annaick; Dixon, Jesse R; Farh, Kai-How; Feizi, Soheil; Karlic, Rosa; Kim, Ah-Ram; Kulkarni, Ashwinikumar; Li, Daofeng; Lowdon, Rebecca; Elliott, GiNell; Mercer, Tim R; Neph, Shane J; Onuchic, Vitor; Polak, Paz; Rajagopal, Nisha; Ray, Pradipta; Sallari, Richard C; Siebenthall, Kyle T; Sinnott-Armstrong, Nicholas A; Stevens, Michael; Thurman, Robert E; Wu, Jie; Zhang, Bo; Zhou, Xin; Beaudet, Arthur E; Boyer, Laurie A; De Jager, Philip L; Farnham, Peggy J; Fisher, Susan J; Haussler, David; Jones, Steven J M; Li, Wei; Marra, Marco A; McManus, Michael T; Sunyaev, Shamil; Thomson, James A; Tlsty, Thea D; Tsai, Li-Huei; Wang, Wei; Waterland, Robert A; Zhang, Michael Q; Chadwick, Lisa H; Bernstein, Bradley E; Costello, Joseph F; Ecker, Joseph R; Hirst, Martin; Meissner, Alexander; Milosavljevic, Aleksandar; Ren, Bing; Stamatoyannopoulos, John A; Wang, Ting; Kellis, Manolis |
Nature. |
25693563 |
2015 Feb 19; |
| A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel. |
Wang, Gang; Zhang, Xiaofeng; Su, Qingtang; Shi, Jie; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative |
Medical image analysis. |
25700360 |
2015 May; |
| D-ribose aids heart failure patients with preserved ejection fraction and diastolic dysfunction: a pilot study. |
Bayram, Melike; St Cyr, J A; Abraham, William T |
Therapeutic advances in cardiovascular disease. |
25701016 |
2015 Jun; |
| Predicting the Naturalistic Course of Major Depressive Disorder Using Clinical and Multimodal Neuroimaging Information: A Multivariate Pattern Recognition Study. |
Schmaal, Lianne; Marquand, Andre F; Rhebergen, Didi; van Tol, Marie-José; Ruhé, Henricus G; van der Wee, Nic J A; Veltman, Dick J; Penninx, Brenda W J H |
Biological psychiatry. |
25702259 |
2015 Aug 15; |
| Regional hippocampal damage in heart failure. |
Woo, Mary A; Ogren, Jennifer A; Abouzeid, Christiane M; Macey, Paul M; Sairafian, Kevin G; Saharan, Priya S; Thompson, Paul M; Fonarow, Gregg C; Hamilton, Michele A; Harper, Ronald M; Kumar, Rajesh |
European journal of heart failure. |
25704495 |
2015 May; |
| Cognitive decline preceding the onset of psychosis in patients with 22q11.2 deletion syndrome. |
Vorstman, Jacob A S; Breetvelt, Elemi J; Duijff, Sasja N; Eliez, Stephan; Schneider, Maude; Jalbrzikowski, Maria; Armando, Marco; Vicari, Stefano; Shashi, Vandana; Hooper, Stephen R; Chow, Eva W C; Fung, Wai Lun Alan; Butcher, Nancy J; Young, Donald A; McDonald-McGinn, Donna M; Vogels, Annick; van Amelsvoort, Therese; Gothelf, Doron; Weinberger, Ronnie; Weizman, Abraham; Klaassen, Petra W J; Koops, Sanne; Kates, Wendy R; Antshel, Kevin M; Simon, Tony J; Ousley, Opal Y; Swillen, Ann; Gur, Raquel E; Bearden, Carrie E; Kahn, René S; Bassett, Anne S; International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome |
JAMA psychiatry. |
25715178 |
2015 Apr; |
| A Pilot Randomized Trial of Text-Messaging for Symptom Awareness and Diabetes Knowledge in Adolescents With Type 1 Diabetes. |
Han, Yi; Faulkner, Melissa Spezia; Fritz, Heather; Fadoju, Doris; Muir, Andrew; Abowd, Gregory D; Head, Lauren; Arriaga, Rosa I |
Journal of pediatric nursing. |
25720675 |
2015 Nov-Dec; |
| Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model. |
Furlotte, Nicholas A; Eskin, Eleazar |
Genetics. |
25724382 |
2015 May; |
| Genome-Wide Analyses of Working-Memory Ability: A Review. |
Knowles, E E M; Mathias, S R; McKay, D R; Sprooten, E; Blangero, John; Almasy, Laura; Glahn, D C |
Current behavioral neuroscience reports. |
25729637 |
2014 Dec; |
| White matter disruption in moderate/severe pediatric traumatic brain injury: advanced tract-based analyses. |
Dennis, Emily L; Jin, Yan; Villalon-Reina, Julio E; Zhan, Liang; Kernan, Claudia L; Babikian, Talin; Mink, Richard B; Babbitt, Christopher J; Johnson, Jeffrey L; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
NeuroImage. Clinical. |
25737958 |
2015; |
| Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data. |
Kochunov, Peter; Jahanshad, Neda; Marcus, Daniel; Winkler, Anderson; Sprooten, Emma; Nichols, Thomas E; Wright, Susan N; Hong, L Elliot; Patel, Binish; Behrens, Timothy; Jbabdi, Saad; Andersson, Jesper; Lenglet, Christophe; Yacoub, Essa; Moeller, Steen; Auerbach, Eddie; Ugurbil, Kamil; Sotiropoulos, Stamatios N; Brouwer, Rachel M; Landman, Bennett; Lemaitre, Hervé; den Braber, Anouk; Zwiers, Marcel P; Ritchie, Stuart; van Hulzen, Kimm; Almasy, Laura; Curran, Joanne; deZubicaray, Greig I; Duggirala, Ravi; Fox, Peter; Martin, Nicholas G; McMahon, Katie L; Mitchell, Braxton; Olvera, Rene L; Peterson, Charles; Starr, John; Sussmann, Jessika; Wardlaw, Joanna; Wright, Margie; Boomsma, Dorret I; Kahn, Rene; de Geus, Eco J C; Williamson, Douglas E; Hariri, Ahmad; van 't Ent, Dennis; Bastin, Mark E; McIntosh, Andrew; Deary, Ian J; Hulshoff Pol, Hilleke E; Blangero, John; Thompson, Paul M; Glahn, David C; Van Essen, David C |
NeuroImage. |
25747917 |
2015 May 01; |
| Medical data transformation using rewriting. |
Ashish, Naveen; Toga, Arthur W |
Frontiers in neuroinformatics. |
25750622 |
2015; |
| Contributions of Feature Binding During Encoding and Functional Connectivity of the Medial Temporal Lobe Structures to Episodic Memory Deficits Across the Prodromal and First-Episode Phases of Schizophrenia. |
Haut, Kristen M; van Erp, Theo G M; Knowlton, Barbara; Bearden, Carrie E; Subotnik, Kenneth; Ventura, Joseph; Nuechterlein, Keith H; Cannon, Tyrone D |
Clinical psychological science : a journal of the Association for Psychological Science. |
25750836 |
2015 Mar; |
| Spatial and temporal dynamics of the cardiac mitochondrial proteome. |
Lau, Edward; Huang, Derrick; Cao, Quan; Dincer, T Umut; Black, Caitie M; Lin, Amanda J; Lee, Jessica M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ping, Peipei |
Expert review of proteomics. |
25752359 |
2015 Apr; |
| Shared genetic variance between obesity and white matter integrity in Mexican Americans. |
Spieker, Elena A; Kochunov, Peter; Rowland, Laura M; Sprooten, Emma; Winkler, Anderson M; Olvera, Rene L; Almasy, Laura; Duggirala, Ravi; Fox, Peter T; Blangero, John; Glahn, David C; Curran, Joanne E |
Frontiers in genetics. |
25763009 |
2015; |
| Cortical thickness and brain volumetric analysis in body dysmorphic disorder. |
Madsen, Sarah K; Zai, Alex; Pirnia, Tara; Arienzo, Donatello; Zhan, Liang; Moody, Teena D; Thompson, Paul M; Feusner, Jamie D |
Psychiatry research. |
25797401 |
2015 Apr 30; |
| Assessing the Availability of Users to Engage in Just-in-Time Intervention in the Natural Environment. |
Sarker, Hillol; Sharmin, Moushumi; Ali, Amin Ahsan; Rahman, Md Mahbubur; Bari, Rummana; Hossain, Syed Monowar; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
25798455 |
2014; |
| Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified. |
Marinov, Georgi K; Wang, Jie; Handler, Dominik; Wold, Barbara J; Weng, Zhiping; Hannon, Gregory J; Aravin, Alexei A; Zamore, Phillip D; Brennecke, Julius; Toth, Katalin Fejes |
Developmental cell. |
25805138 |
2015 Mar 23; |
| Fast and powerful heritability inference for family-based neuroimaging studies. |
Ganjgahi, Habib; Winkler, Anderson M; Glahn, David C; Blangero, John; Kochunov, Peter; Nichols, Thomas E |
NeuroImage. |
25812717 |
2015 Jul 15; |
| Harnessing the heart of big data. |
Scruggs, Sarah B; Watson, Karol; Su, Andrew I; Hermjakob, Henning; Yates 3rd, John R; Lindsey, Merry L; Ping, Peipei |
Circulation research. |
25814682 |
2015 Mar 27; |
| Are We There Yet? Feasibility of Continuous Stress Assessment via Wireless Physiological Sensors. |
Rahman, Mahbubur; Bari, Rummana; Ali, Amin Ahsan; Sharmin, Moushumi; Raij, Andrew; Hovsepian, Karen; Hossain, Syed Monowar; Ertin, Emre; Kennedy, Ashley; Epstein, David H; Preston, Kenzie L; Jobes, Michelle; Beck, J Gayle; Kedia, Satish; Ward, Kenneth D; al'Absi, Mustafa; Kumar, Santosh |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
25821861 |
2014; |
| Subcortical shape and volume abnormalities in an elderly HIV+ cohort. |
Wade, Benjamin S C; Valcour, Victor; Busovaca, Edgar; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25844123 |
2015 Mar 17; |
| EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. |
Leng, Ning; Li, Yuan; McIntosh, Brian E; Nguyen, Bao Kim; Duffin, Bret; Tian, Shulan; Thomson, James A; Dewey, Colin N; Stewart, Ron; Kendziorski, Christina |
Bioinformatics (Oxford, England). |
25847007 |
2015 Aug 15; |
| Communication of brain network core connections altered in behavioral variant frontotemporal dementia but possibly preserved in early-onset Alzheimer's disease. |
Daianu, Madelaine; Jahanshad, Neda; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25848494 |
2015 Mar 20; |
| 7T Multi-shell Hybrid Diffusion Imaging (HYDI) for Mapping Brain Connectivity in Mice. |
Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Prasad, Gautam; Jacobs, Russell E; Barnes, Samuel; Zlokovic, Berislav V; Montagne, Axel; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25859293 |
2015 Mar 20; |
| Towards Scalable Graph Computation on Mobile Devices. |
Chen, Yiqi; Lin, Zhiyuan; Pienta, Robert; Kahng, Minsuk; Chau, Duen Horng |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25859564 |
2014 Oct; |
| MAGE: Matching Approximate Patterns in Richly-Attributed Graphs. |
Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Chau, Duen Horng |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25859565 |
2014 Oct; |
| Inferring Meal Eating Activities in Real World Settings from Ambient Sounds: A Feasibility Study. |
Thomaz, Edison; Zhang, Cheng; Essa, Irfan; Abowd, Gregory D |
IUI. International Conference on Intelligent User Interfaces. |
25859566 |
2015 Mar-Apr; |
| Interactive Querying over Large Network Data: Scalability, Visualization, and Interaction Design. |
Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng |
IUI. International Conference on Intelligent User Interfaces. |
25859567 |
2015 Mar-Apr; |
| MMap: Fast Billion-Scale Graph Computation on a PC via Memory Mapping. |
Lin, Zhiyuan; Kahng, Minsuk; Sabrin, Kaeser Md; Chau, Duen Horng Polo; Lee, Ho; Kang, U |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25866846 |
2014 Oct; |
| Estimating Drivers' Stress from GPS Traces. |
Vhaduri, Sudip; Ali, Amin; Sharmin, Moushumi; Hovsepian, Karen; Kumar, Santosh |
Proceedings : AutomotiveUI 2014 : 6th International Conference on Automotive User Interfaces and Interactive Vehicular Applications : September 17-19, 2014, Seattle, Washington, USA. International Conference on Automotive User Interface.... |
25866847 |
2014 Sep 17; |
| Alterations in frontal white matter neurochemistry and microstructure in schizophrenia: implications for neuroinflammation. |
Chiappelli, J; Hong, L E; Wijtenburg, S A; Du, X; Gaston, F; Kochunov, P; Rowland, L M |
Translational psychiatry. |
25871973 |
2015 Apr 14; |
| Crowdsourcing in biomedicine: challenges and opportunities. |
Khare, Ritu; Good, Benjamin M; Leaman, Robert; Su, Andrew I; Lu, Zhiyong |
Briefings in bioinformatics. |
25888696 |
2016 Jan; |
| Novel Neuroimaging Methods to Understand How HIV Affects the Brain. |
Thompson, Paul M; Jahanshad, Neda |
Current HIV/AIDS reports. |
25902966 |
2015 Jun; |
| Structured learning for spatial information extraction from biomedical text: bacteria biotopes. |
Kordjamshidi, Parisa; Roth, Dan; Moens, Marie-Francine |
BMC bioinformatics. |
25909637 |
2015; |
| A Transformation Similarity Constraint for Groupwise Nonlinear Registration in Longitudinal Neuro Imaging Studies. |
Fleishman, Greg M; Gutman, Boris A; Fletcher, P Thomas; Thompson, Paul |
Proceedings of SPIE--the International Society for Optical Engineering. |
25914796 |
2015 Mar 20; |
| Multiset Statistics for Gene Set Analysis. |
Newton, Michael A; Wang, Zhishi |
Annual review of statistics and its application. |
25914887 |
2015 Apr; |
| Toward a complete dataset of drug-drug interaction information from publicly available sources. |
Ayvaz, Serkan; Horn, John; Hassanzadeh, Oktie; Zhu, Qian; Stan, Johann; Tatonetti, Nicholas P; Vilar, Santiago; Brochhausen, Mathias; Samwald, Matthias; Rastegar-Mojarad, Majid; Dumontier, Michel; Boyce, Richard D |
Journal of biomedical informatics. |
25917055 |
2015 Jun; |
| Continuous in-the-field measurement of heart rate: Correlates of drug use, craving, stress, and mood in polydrug users. |
Kennedy, Ashley P; Epstein, David H; Jobes, Michelle L; Agage, Daniel; Tyburski, Matthew; Phillips, Karran A; Ali, Amin Ahsan; Bari, Rummana; Hossain, Syed Monowar; Hovsepian, Karen; Rahman, Md Mahbubur; Ertin, Emre; Kumar, Santosh; Preston, Kenzie L |
Drug and alcohol dependence. |
25920802 |
2015 Jun 01; |
| Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias toward GC Content and the Inverted Repeat Regions. |
Lee, Kyubin; Kolb, Aaron W; Sverchkov, Yuriy; Cuellar, Jacqueline A; Craven, Mark; Brandt, Curtis R |
Journal of virology. |
25926637 |
2015 Jul; |
| Comparison of nine tractography algorithms for detecting abnormal structural brain networks in Alzheimer's disease. |
Zhan, Liang; Zhou, Jiayu; Wang, Yalin; Jin, Yan; Jahanshad, Neda; Prasad, Gautam; Nir, Talia M; Leonardo, Cassandra D; Ye, Jieping; Thompson, Paul M; For The Alzheimer's Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
25926791 |
2015; |
| Muscle LIM Protein: Master regulator of cardiac and skeletal muscle functions. |
Vafiadaki, Elizabeth; Arvanitis, Demetrios A; Sanoudou, Despina |
Gene. |
25936993 |
2015 Jul 15; |
| Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. |
Moon, Seok Woo; Dinov, Ivo D; Hobel, Sam; Zamanyan, Alen; Choi, Young Chil; Shi, Ran; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
25940587 |
2015 Sep; |
| Deviant white matter structure in adults with attention-deficit/hyperactivity disorder points to aberrant myelination and affects neuropsychological performance. |
Onnink, A Marten H; Zwiers, Marcel P; Hoogman, Martine; Mostert, Jeanette C; Dammers, Janneke; Kan, Cornelis C; Vasquez, Alejandro Arias; Schene, Aart H; Buitelaar, Jan; Franke, Barbara |
Progress in neuro-psychopharmacology & biological psychiatry. |
25956761 |
2015 Dec 03; |
| Human paraoxonase-1 (PON1): Gene structure and expression, promiscuous activities and multiple physiological roles. |
Mackness, Mike; Mackness, Bharti |
Gene. |
25965560 |
2015 Aug 1; |
| The digital phenotype. |
Jain, Sachin H; Powers, Brian W; Hawkins, Jared B; Brownstein, John S |
Nature biotechnology. |
25965751 |
2015 May; |
| The Image and Data Archive at the Laboratory of Neuro Imaging. |
Crawford, Karen L; Neu, Scott C; Toga, Arthur W |
NeuroImage. |
25982516 |
2015 May 14; |
| Association of Protein Phosphatase PPM1G With Alcohol Use Disorder and Brain Activity During Behavioral Control in a Genome-Wide Methylation Analysis. |
Ruggeri, Barbara; Nymberg, Charlotte; Vuoksimaa, Eero; Lourdusamy, Anbarasu; Wong, Cybele P; Carvalho, Fabiana M; Jia, Tianye; Cattrell, Anna; Macare, Christine; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Pausova, Zdenka; Paus, Tomá?; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Spanagel, Rainer; Bakalkin, Georgy; Mill, Jonathan; Sommer, Wolfgang H; Rose, Richard J; Yan, Jia; Aliev, Fazil; Dick, Danielle; Kaprio, Jaakko; Desrivières, Sylvane; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
25982659 |
2015 Jun; |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection. |
Ewing, Adam D; Houlahan, Kathleen E; Hu, Yin; Ellrott, Kyle; Caloian, Cristian; Yamaguchi, Takafumi N; Bare, J Christopher; P'ng, Christine; Waggott, Daryl; Sabelnykova, Veronica Y; ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants; Kellen, Michael R; Norman, Thea C; Haussler, David; Friend, Stephen H; Stolovitzky, Gustavo; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C |
Nature methods. |
25984700 |
2015 Jul; |
| Trans-species learning of cellular signaling systems with bimodal deep belief networks. |
Chen, Lujia; Cai, Chunhui; Chen, Vicky; Lu, Xinghua |
Bioinformatics (Oxford, England). |
25995230 |
2015 Sep 15; |
| From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. |
Lavallée-Adam, Mathieu; Park, Sung Kyu Robin; Martínez-Bartolomé, Salvador; He, Lin; Yates 3rd, John R |
Journal of the American Society for Mass Spectrometry. |
26002791 |
2015 Nov; |
| GLO-STIX: Graph-Level Operations for Specifying Techniques and Interactive eXploration. |
Stolper, Charles D; Kahng, Minsuk; Lin, Zhiyuan; Foerster, Florian; Goel, Aakash; Stasko, John; Chau, Duen Horng |
IEEE transactions on visualization and computer graphics. |
26005315 |
2014 Dec 31; |
| Multi-resolution statistical analysis of brain connectivity graphs in preclinical Alzheimer's disease. |
Kim, Won Hwa; Adluru, Nagesh; Chung, Moo K; Okonkwo, Ozioma C; Johnson, Sterling C; B Bendlin, Barbara; Singh, Vikas |
NeuroImage. |
26025289 |
2015 Sep; |
| Accurate and fast multiple-testing correction in eQTL studies. |
Sul, Jae Hoon; Raj, Towfique; de Jong, Simone; de Bakker, Paul I W; Raychaudhuri, Soumya; Ophoff, Roel A; Stranger, Barbara E; Eskin, Eleazar; Han, Buhm |
American journal of human genetics. |
26027500 |
2015 Jun 4; |
| Therapeutically Targetable ALK Mutations in Leukemia. |
Maxson, Julia E; Davare, Monika A; Luty, Samuel B; Eide, Christopher A; Chang, Bill H; Loriaux, Marc M; Tognon, Cristina E; Bottomly, Daniel; Wilmot, Beth; McWeeney, Shannon K; Druker, Brian J; Tyner, Jeffrey W |
Cancer research. |
26032424 |
2015 Jun 01; |
| Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. |
van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Hulshoff Pol, H E; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J A |
Molecular psychiatry. |
26033243 |
2016 Apr; |
| Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network. |
Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
26037224 |
2015 Aug; |
| Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research. |
Chen, Bin; Sirota, Marina; Fan-Minogue, Hua; Hadley, Dexter; Butte, Atul J |
BMC medical genomics. |
26043652 |
2015; |
| Sharing data in the global alzheimer's association interactive network. |
Neu, Scott C; Crawford, Karen L; Toga, Arthur W |
NeuroImage. |
26049147 |
2015 Jun 4; |
| Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. |
Cancer Genome Atlas Research Network (see original citation for additional authors) |
The New England journal of medicine. |
26061751 |
2015 Jun 25; |
| BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks. |
Richiardi, Jonas; Altmann, Andre; Milazzo, Anna-Clare; Chang, Catie; Chakravarty, M Mallar; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Lemaître, Hervé; Mann, Karl F; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomá?; Pausova, Zdenka; Rietschel, Marcella; Robbins, Trevor W; Smolka, Michael N; Spanagel, Rainer; Ströhle, Andreas; Schumann, Gunter; Hawrylycz, Mike; Poline, Jean-Baptiste; Greicius, Michael D; IMAGEN consortium |
Science (New York, N.Y.). |
26068849 |
2015 Jun 12; |
| Identification of causal genes for complex traits. |
Hormozdiari, Farhad; Kichaev, Gleb; Yang, Wen-Yun; Pasaniuc, Bogdan; Eskin, Eleazar |
Bioinformatics (Oxford, England). |
26072484 |
2015 Jun 15; |
| Exploiting ontology graph for predicting sparsely annotated gene function. |
Wang, Sheng; Cho, Hyunghoon; Zhai, ChengXiang; Berger, Bonnie; Peng, Jian |
Bioinformatics (Oxford, England). |
26072504 |
2015 Jun 15; |
| Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome. |
Hewitt, Kyle J; Kim, Duk Hyoung; Devadas, Prithvia; Prathibha, Rajalekshmi; Zuo, Chandler; Sanalkumar, Rajendran; Johnson, Kirby D; Kang, Yoon-A; Kim, Jin-Soo; Dewey, Colin N; Keles, Sunduz; Bresnick, Emery H |
Molecular cell. |
26073540 |
2015 Jul 2; |
| Functions of myosin light chain-2 (MYL2) in cardiac muscle and disease. |
Sheikh, Farah; Lyon, Robert C; Chen, Ju |
Gene. |
26074085 |
2015 Sep 10; |
| Atrial natriuretic peptide in cardiovascular biology and disease (NPPA). |
Song, Wei; Wang, Hao; Wu, Qingyu |
Gene. |
26074089 |
2015 Sep 10; |
| Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia. |
Herskovits, Edward H; Hong, L Elliot; Kochunov, Peter; Sampath, Hemalatha; Chen, Rong |
Neuroinformatics. |
26078102 |
2015 Oct; |
| Brain Imaging and Neurodevelopment in HIV-uninfected Thai Children Born to HIV-infected Mothers. |
Jahanshad, Neda; Couture, Marie-Claude; Prasitsuebsai, Wasana; Nir, Talia M; Aurpibul, Linda; Thompson, Paul M; Pruksakaew, Kanchana; Lerdlum, Sukalaya; Visrutaratna, Pannee; Catella, Stephanie; Desai, Akash; Kerr, Stephen J; Puthanakit, Thanyawee; Paul, Robert; Ananworanich, Jintanat; Valcour, Victor G; SEARCH 012 and PREDICT Study Groups |
The Pediatric infectious disease journal. |
26090574 |
2015 Sep; |
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The Journal of neuroscience : the official journal of the Society for Neuroscience. |
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European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
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Bioinformatics (Oxford, England). |
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| A predictive modeling approach for cell line-specific long-range regulatory interactions. |
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Proceedings of the National Academy of Sciences of the United States of America. |
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| Similar Subgroups Based on Cognitive Performance Parse Heterogeneity in Adults With ADHD and Healthy Controls. |
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Journal of neurotrauma. |
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| Random Forest Classification of Depression Status Based On Subcortical Brain Morphometry Following Electroconvulsive Therapy. |
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| FEATURE SELECTION IMPROVES THE ACCURACY OF CLASSIFYING ALZHEIMER DISEASE USING DIFFUSION TENSOR IMAGES. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| Boosting Classification Accuracy of Diffusion MRI Derived Brain Networks for the Subtypes of Mild Cognitive Impairment Using Higher Order Singular Value Decomposition. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| AUTOMATED MULTI-ATLAS LABELING OF THE FORNIX AND ITS INTEGRITY IN ALZHEIMER'S DISEASE. |
Jin, Yan; Shi, Yonggang; Zhan, Liang; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| HERITABILITY OF BRAIN NETWORK TOPOLOGY IN 853 TWINS AND SIBLINGS. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| SPECTRAL GRAPH THEORY AND GRAPH ENERGY METRICS SHOW EVIDENCE FOR THE ALZHEIMER'S DISEASE DISCONNECTION SYNDROME IN APOE-4 RISK GENE CARRIERS. |
Daianu, Madelaine; Mezher, Adam; Jahanshad, Neda; Hibar, Derrek P; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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| MAPPING ABNORMAL SUBCORTICAL BRAIN MORPHOMETRY IN AN ELDERLY HIV+ COHORT. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413207 |
2015 Apr; |
| Information-Theoretic Characterization of Blood Panel Predictors for Brain Atrophy and Cognitive Decline in the Elderly. |
Madsen, Sarah K; Ver Steeg, Greg; Mezher, Adam; Jahanshad, Neda; Nir, Talia M; Hua, Xue; Gutman, Boris A; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413208 |
2015 Apr; |
| Detecting Genetic Risk Factors for Alzheimer's Disease in Whole Genome Sequence Data via Lasso Screening. |
Yang, Tao; Wang, Jie; Sun, Qian; Hibar, Derrek P; Jahanshad, Neda; Liu, Li; Wang, Yalin; Zhan, Liang; Thompson, Paul M; Ye, Jieping |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413209 |
2015 Apr; |
| GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS. |
Zhu, Dajiang; Zhan, Liang; Faskowitz, Joshua; Daianu, Madelaine; Jahanshad, Neda; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413210 |
2015 Apr; |
| Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis. |
Gutman, Boris A; Jahanshad, Neda; Ching, Christopher R K; Wang, Yalin; Kochunov, Peter V; Nichols, Thomas E; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413211 |
2015 Apr; |
| Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis. |
Hu, Dong; Gur, Mert; Zhou, Zhuan; Gamper, Armin; Hung, Mien-Chie; Fujita, Naoya; Lan, Li; Bahar, Ivet; Wan, Yong |
Nature communications. |
26420673 |
2015; |
| Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. |
Papale, Ligia A; Zhang, Qi; Li, Sisi; Chen, Kailei; Kele?, Sündüz; Alisch, Reid S |
Human molecular genetics. |
26423458 |
2015 Dec 15; |
| Endothelial nitric oxide synthase: From biochemistry and gene structure to clinical implications of NOS3 polymorphisms. |
Oliveira-Paula, Gustavo H; Lacchini, Riccardo; Tanus-Santos, Jose E |
Gene. |
26428312 |
2016 Jan 10; |
| Optimal mass transport for shape matching and comparison. |
Su, Zhengyu; Wang, Yalin; Shi, Rui; Zeng, Wei; Sun, Jian; Luo, Feng; Gu, Xianfeng |
IEEE transactions on pattern analysis and machine intelligence. |
26440265 |
2015 Nov; |
| Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. |
Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W |
Journal of Alzheimer's disease : JAD. |
26444770 |
2015; |
| Risk of Type 2 Diabetes Is Lower in US Adults Taking Chromium-Containing Supplements. |
McIver, David J; Grizales, Ana Maria; Brownstein, John S; Goldfine, Allison B |
The Journal of nutrition. |
26446484 |
2015 Dec; |
| Age exacerbates HIV-associated white matter abnormalities. |
Seider, Talia R; Gongvatana, Assawin; Woods, Adam J; Chen, Huaihou; Porges, Eric C; Cummings, Tiffany; Correia, Stephen; Tashima, Karen; Cohen, Ronald A |
Journal of neurovirology. |
26446690 |
2016 Apr; |
| HFE gene: Structure, function, mutations, and associated iron abnormalities. |
Barton, James C; Edwards, Corwin Q; Acton, Ronald T |
Gene. |
26456104 |
2015 Dec 15; |
| Neurocognitive Deficits in Attention-Deficit/Hyperactivity Disorder With and Without Comorbid Oppositional Defiant Disorder. |
Noordermeer, Siri D S; Luman, Marjolein; Buitelaar, Jan K; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Faraone, Stephen V; Heslenfeld, Dirk J; Oosterlaan, Jaap |
Journal of attention disorders. |
26486602 |
2015 Oct 20; |
| A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. |
Vialas, Vital; Sun, Zhi; Reales-Calderón, Jose A; Hernáez, María L; Casas, Vanessa; Carrascal, Montserrat; Abián, Joaquín; Monteoliva, Lucía; Deutsch, Eric W; Moritz, Robert L; Gil, Concha |
Journal of proteomics. |
26493587 |
2016 Jan 10; |
| The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. |
Kochunov, Peter; Thompson, Paul M; Winkler, Anderson; Morrissey, Mary; Fu, Mao; Coyle, Thomas R; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Gaudiot, Christopher; Sampath, Hemalatha; Eskandar, George; Jahanshad, Neda; Patel, Binish; Rowland, Laura; Nichols, Thomas E; O'Connell, Jeffrey R; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot |
NeuroImage. |
26499807 |
2016 Jan 15; |
| Computational discovery of transcription factors associated with drug response. |
Hanson, C; Cairns, J; Wang, L; Sinha, S |
The pharmacogenomics journal. |
26503816 |
2016 Nov; |
| Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence. |
Fernàndez-Castillo, N; Cabana-Domínguez, J; Soriano, J; Sànchez-Mora, C; Roncero, C; Grau-López, L; Ros-Cucurull, E; Daigre, C; van Donkelaar, M M J; Franke, B; Casas, M; Ribasés, M; Cormand, B |
Translational psychiatry. |
26506053 |
2015; |
| Comparing Mammography Abnormality Features to Genetic Variants in the Prediction of Breast Cancer in Women Recommended for Breast Biopsy. |
Burnside, Elizabeth S; Liu, Jie; Wu, Yirong; Onitilo, Adedayo A; McCarty, Catherine A; Page, C David; Peissig, Peggy L; Trentham-Dietz, Amy; Kitchner, Terrie; Fan, Jun; Yuan, Ming |
Academic radiology. |
26514439 |
2016 Jan; |
| An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer's disease. |
Daianu, Madelaine; Mendez, Mario F; Baboyan, Vatche G; Jin, Yan; Melrose, Rebecca J; Jimenez, Elvira E; Thompson, Paul M |
Brain imaging and behavior. |
26515192 |
2016 Dec; |
| Global Data Sharing in Alzheimer Disease Research. |
Ashish, Naveen; Bhatt, Priya; Toga, Arthur W |
Alzheimer disease and associated disorders. |
26523713 |
2016 Apr-Jun; |
| TNNI1, TNNI2 and TNNI3: Evolution, regulation, and protein structure-function relationships. |
Sheng, Juan-Juan; Jin, Jian-Ping |
Gene. |
26526134 |
2016 Jan 15; |
| Heritability of complex white matter diffusion traits assessed in a population isolate. |
Kochunov, Peter; Fu, Mao; Nugent, Katie; Wright, Susan N; Du, Xiaoming; Muellerklein, Florian; Morrissey, Mary; Eskandar, George; Shukla, Dinesh K; Jahanshad, Neda; Thompson, Paul M; Patel, Binish; Postolache, Teodor T; Strauss, Kevin A; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot |
Human brain mapping. |
26538488 |
2016 Feb; |
| iShadow: Design of a Wearable, Real-Time Mobile Gaze Tracker. |
Mayberry, Addison; Hu, Pan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
26539565 |
2014 Jun; |
| Visualization of Time-Series Sensor Data to Inform the Design of Just-In-Time Adaptive Stress Interventions. |
Sharmin, Moushumi; Raij, Andrew; Epstien, David; Nahum-Shani, Inbal; Beck, J Gayle; Vhaduri, Sudip; Preston, Kenzie; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26539566 |
2015 Sep; |
| Automated-immunosensor with centrifugal fluid valves for salivary cortisol measurement. |
Yamaguchi, Masaki; Katagata, Hiroki; Tezuka, Yuki; Niwa, Daisuke; Shetty, Vivek |
Sensing and Bio-Sensing Research. |
26543818 |
2014 Aug; |
| Stress: Towards a Gold Standard for Continuous Stress Assessment in the Mobile Environment. |
Hovsepian, Karen; al'Absi, Mustafa; Ertin, Emre; Kamarck, Thomas; Nakajima, Motohiro; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26543926 |
2015 Sep; |
| puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation. |
Saleheen, Nazir; Ali, Amin Ahsan; Hossain, Syed Monowar; Sarker, Hillol; Chatterjee, Soujanya; Marlin, Benjamin; Ertin, Emre; al'Absi, Mustafa; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26543927 |
2015 Sep; |
| MRI-based brain atrophy rates in ADNI phase 2: acceleration and enrichment considerations for clinical trials. |
Hua, Xue; Ching, Christopher R K; Mezher, Adam; Gutman, Boris A; Hibar, Derrek P; Bhatt, Priya; Leow, Alex D; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Neurobiology of aging. |
26545631 |
2016 Jan; |
| Jagged1 (JAG1): Structure, expression, and disease associations. |
Grochowski, Christopher M; Loomes, Kathleen M; Spinner, Nancy B |
Gene. |
26548814 |
2016 Jan 15; |
| Center of excellence for mobile sensor data-to-knowledge (MD2K). |
Kumar, Santosh; Abowd, Gregory D; Abraham, William T; al'Absi, Mustafa; Beck, J Gayle; Chau, Duen Horng; Condie, Tyson; Conroy, David E; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Lam, Cho; Marlin, Benjamin; Marsh, Clay B; Murphy, Susan A; Nahum-Shani, Inbal; Patrick, Kevin; Rehg, James M; Sharmin, Moushumi; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, David W |
Journal of the American Medical Informatics Association : JAMIA. |
26555017 |
2015 Nov; |
| Entorhinal Cortex Thickness across the Human Lifespan. |
Hasan, Khader M; Mwangi, Benson; Cao, Bo; Keser, Zafer; Tustison, Nicholas J; Kochunov, Peter; Frye, Richard E; Savatic, Mirjana; Soares, Jair |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
26565394 |
2016 May; |
| Sharing the wealth: Neuroimaging data repositories. |
Eickhoff, Simon; Nichols, Thomas E; Van Horn, John D; Turner, Jessica A |
NeuroImage. |
26574120 |
2016 Jan 1; |
| Childhood abuse and deprivation are associated with distinct sex-dependent differences in brain morphology. |
Everaerd, Daphne; Klumpers, Floris; Zwiers, Marcel; Guadalupe, Tulio; Franke, Barbara; van Oostrom, Iris; Schene, Aart; Fernández, Guillén; Tendolkar, Indira |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
26576924 |
2016 Jun; |
| Cracking the brain's genetic code. |
Thompson, Paul M |
Proceedings of the National Academy of Sciences of the United States of America. |
26582794 |
2015 Dec 15; |
| The UCSC Genome Browser database: 2016 update. |
Speir, Matthew L; Zweig, Ann S; Rosenbloom, Kate R; Raney, Brian J; Paten, Benedict; Nejad, Parisa; Lee, Brian T; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P; Haussler, David; Kuhn, Robert M; Kent, W James |
Nucleic acids research. |
26590259 |
2016 Jan 4; |
| Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress. |
Li, Sisi; Papale, Ligia A; Zhang, Qi; Madrid, Andy; Chen, Li; Chopra, Pankaj; Kele?, Sündüz; Jin, Peng; Alisch, Reid S |
Neurobiology of disease. |
26598390 |
2016 Feb; |
| Binary Classifier Calibration Using a Bayesian Non-Parametric Approach. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F; Hauskrecht, Milos |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
26613068 |
2015; |
| Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage. |
Burnside, Elizabeth S; Drukker, Karen; Li, Hui; Bonaccio, Ermelinda; Zuley, Margarita; Ganott, Marie; Net, Jose M; Sutton, Elizabeth J; Brandt, Kathleen R; Whitman, Gary J; Conzen, Suzanne D; Lan, Li; Ji, Yuan; Zhu, Yitan; Jaffe, Carl C; Huang, Erich P; Freymann, John B; Kirby, Justin S; Morris, Elizabeth A; Giger, Maryellen L |
Cancer. |
26619259 |
2016 Mar 01; |
| Saul: Towards Declarative Learning Based Programming. |
Kordjamshidi, Parisa; Roth, Dan; Wu, Hao |
IJCAI : proceedings of the conference. |
26635465 |
2015 Jul; |
| Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort. |
Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Gutman, Boris A; Thompson, Paul M |
NeuroImage. Clinical. |
26640768 |
2015; |
| Algebraic connectivity of brain networks shows patterns of segregation leading to reduced network robustness in Alzheimer's disease. |
Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Leonardo, Cassandra D; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matthew A; Thompson, Paul M |
Computational diffusion MRI : MICCAI Workshop, Boston, MA, USA, September 2014. CDMRI (Workshop) (6th : 2014 : Boston, Mass.). |
26640830 |
2014; |
| Characterizing Smoking and Drinking Abstinence from Social Media. |
Tamersoy, Acar; De Choudhury, Munmun; Chau, Duen Horng |
HT ... : the proceedings of the ... ACM Conference on Hypertext and Social Media. ACM Conference on Hypertext and Social Media. |
26640831 |
2015 Sep; |
| Cerebral Amyloid and Hypertension are Independently Associated with White Matter Lesions in Elderly. |
Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; Alzheimer?s Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
26648866 |
2015; |
| Building health behavior models to guide the development of just-in-time adaptive interventions: A pragmatic framework. |
Nahum-Shani, Inbal; Hekler, Eric B; Spruijt-Metz, Donna |
Health psychology : official journal of the Division of Health Psychology, American Psychological Association. |
26651462 |
2015 Dec; |
| Microrandomized trials: An experimental design for developing just-in-time adaptive interventions. |
Klasnja, Predrag; Hekler, Eric B; Shiffman, Saul; Boruvka, Audrey; Almirall, Daniel; Tewari, Ambuj; Murphy, Susan A |
Health psychology : official journal of the Division of Health Psychology, American Psychological Association. |
26651463 |
2015 Dec; |
| The Reactome pathway Knowledgebase. |
Fabregat, Antonio; Sidiropoulos, Konstantinos; Garapati, Phani; Gillespie, Marc; Hausmann, Kerstin; Haw, Robin; Jassal, Bijay; Jupe, Steven; Korninger, Florian; McKay, Sheldon; Matthews, Lisa; May, Bruce; Milacic, Marija; Rothfels, Karen; Shamovsky, Veronica; Webber, Marissa; Weiser, Joel; Williams, Mark; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter |
Nucleic acids research. |
26656494 |
2016 Jan 4; |
| ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. |
Thompson, Paul M; Andreassen, Ole A; Arias-Vasquez, Alejandro; Bearden, Carrie E; Boedhoe, Premika S; Brouwer, Rachel M; Buckner, Randy L; Buitelaar, Jan K; Bulayeva, Kazima B; Cannon, Dara M; Cohen, Ronald A; Conrod, Patricia J; Dale, Anders M; Deary, Ian J; Dennis, Emily L; de Reus, Marcel A; Desrivieres, Sylvane; Dima, Danai; Donohoe, Gary; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Ganjgahi, Habib; Garavan, Hugh; Glahn, David C; Grabe, Hans J; Guadalupe, Tulio; Gutman, Boris A; Hashimoto, Ryota; Hibar, Derrek P; Holland, Dominic; Hoogman, Martine; Pol, Hilleke E Hulshoff; Hosten, Norbert; Jahanshad, Neda; Kelly, Sinead; Kochunov, Peter; Kremen, William S; Lee, Phil H; Mackey, Scott; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Colm; Medland, Sarah E; Morey, Rajendra A; Nichols, Thomas E; Paus, Tomas; Pausova, Zdenka; Schmaal, Lianne; Schumann, Gunter; Shen, Li; Sisodiya, Sanjay M; Smit, Dirk J A; Smoller, Jordan W; Stein, Dan J; Stein, Jason L; Toro, Roberto; Turner, Jessica A; van den Heuvel, Martijn P; van den Heuvel, Odile L; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Walter, Henrik; Wang, Yalin; Wardlaw, Joanna M; Whelan, Christopher D; Wright, Margaret J; Ye, Jieping; ENIGMA Consortium |
NeuroImage. |
26658930 |
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| Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves. |
Buffon, Giseli; Blasi, Édina A R; Adamski, Janete M; Ferla, Noeli J; Berger, Markus; Santi, Lucélia; Lavallée-Adam, Mathieu; Yates 3rd, John R; Beys-da-Silva, Walter O; Sperotto, Raul A |
Journal of proteome research. |
26667653 |
2016 Feb 05; |
| Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease. |
Daianu, Madelaine; Mezher, Adam; Mendez, Mario F; Jahanshad, Neda; Jimenez, Elvira E; Thompson, Paul M |
Human brain mapping. |
26678225 |
2016 Mar; |
| Voxel-based morphometry analysis reveals frontal brain differences in participants with ADHD and their unaffected siblings. |
Bralten, Janita; Greven, Corina U; Franke, Barbara; Mennes, Maarten; Zwiers, Marcel P; Rommelse, Nanda N J; Hartman, Catharina; van der Meer, Dennis; O'Dwyer, Laurence; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Arias-Vasquez, Alejandro; Buitelaar, Jan K |
Journal of psychiatry & neuroscience : JPN. |
26679925 |
2016 Jun; |
| Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. |
Andres-Terre, Marta; McGuire, Helen M; Pouliot, Yannick; Bongen, Erika; Sweeney, Timothy E; Tato, Cristina M; Khatri, Purvesh |
Immunity. |
26682989 |
2015 Dec 15; |
| Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. |
Daianu, Madelaine; Jacobs, Russell E; Weitz, Tara M; Town, Terrence C; Thompson, Paul M |
PloS one. |
26683657 |
2015; |
| Protein kinase A catalytic subunit isoform PRKACA; History, function and physiology. |
Turnham, Rigney E; Scott, John D |
Gene. |
26687711 |
2016 Feb 15; |
| RisQ: Recognizing Smoking Gestures with Inertial Sensors on a Wristband. |
Parate, Abhinav; Chiu, Meng-Chieh; Chadowitz, Chaniel; Ganesan, Deepak; Kalogerakis, Evangelos |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
26688835 |
2014 Jun; |
| A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies. |
Li, Junlong; Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Callegaro, Andrea; Dizier, Benjamin; Spiessens, Bart; Ulloa-Montoya, Fernando; Wei, Lee-Jen |
Biometrics. |
26689167 |
2016 Sep; |
| Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures. |
Prilutsky, Daria; Kho, Alvin T; Palmer, Nathan P; Bhakar, Asha L; Smedemark-Margulies, Niklas; Kong, Sek Won; Margulies, David M; Bear, Mark F; Kohane, Isaac S |
Molecular autism |
26697163 |
2015 |
| The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. |
Hesselager, Marianne O; Codrea, Marius C; Sun, Zhi; Deutsch, Eric W; Bennike, Tue B; Stensballe, Allan; Bundgaard, Louise; Moritz, Robert L; Bendixen, Emøke |
Proteomics. |
26699206 |
2016 Feb; |
| Mining Quality Phrases from Massive Text Corpora. |
Liu, Jialu; Shang, Jingbo; Wang, Chi; Ren, Xiang; Han, Jiawei |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
26705375 |
2015 May-Jun; |
| On the Discovery of Evolving Truth. |
Li, Yaliang; Li, Qi; Gao, Jing; Su, Lu; Zhao, Bo; Fan, Wei; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705502 |
2015 Aug; |
| ClusType: Effective Entity Recognition and Typing by Relation Phrase-Based Clustering. |
Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Tao, Fangbo; Voss, Clare R; Ji, Heng; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705503 |
2015 Aug; |
| Incorporating World Knowledge to Document Clustering via Heterogeneous Information Networks. |
Wang, Chenguang; Song, Yangqiu; El-Kishky, Ahmed; Roth, Dan; Zhang, Ming; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705504 |
2015 Aug; |
| Towards Interactive Construction of Topical Hierarchy: A Recursive Tensor Decomposition Approach. |
Wang, Chi; Liu, Xueqing; Song, Yanglei; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705505 |
2015 Aug; |
| Assembler: Efficient Discovery of Spatial Co-evolving Patterns in Massive Geo-sensory Data. |
Zhang, Chao; Zheng, Yu; Ma, Xiuli; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705506 |
2015 Aug; |
| Modeling Truth Existence in Truth Discovery. |
Zhi, Shi; Zhao, Bo; Tong, Wenzhu; Gao, Jing; Yu, Dian; Ji, Heng; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705507 |
2015 Aug; |
| Automatic Entity Recognition and Typing from Massive Text Corpora: A Phrase and Network Mining Approach. |
Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705508 |
2015 Aug; |
| Graph Regularized Meta-path Based Transductive Regression in Heterogeneous Information Network. |
Wan, Mengting; Ouyang, Yunbo; Kaplan, Lance; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
26705510 |
2015 Apr-May; |
| Leveraging Pattern Semantics for Extracting Entities in Enterprises. |
Tao, Fangbo; Zhao, Bo; Fuxman, Ariel; Li, Yang; Han, Jiawei |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
26705540 |
2015 May; |
| Robust Classification of Information Networks by Consistent Graph Learning. |
Zhi, Shi; Han, Jiawei; Gu, Quanquan |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
26705541 |
2015 Sep; |
| Sample size calculations for micro-randomized trials in mHealth. |
Liao, Peng; Klasnja, Predrag; Tewari, Ambuj; Murphy, Susan A |
Statistics in medicine. |
26707831 |
2016 05 30; |
| TOPTRAC: Topical Trajectory Pattern Mining. |
Kim, Younghoon; Han, Jiawei; Yuan, Cangzhou |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26709365 |
2015 Aug; |
| Fast Inbound Top-K Query for Random Walk with Restart. |
Zhang, Chao; Jiang, Shan; Chen, Yucheng; Sun, Yidan; Han, Jiawei |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
26709392 |
2015 Sep; |
| Debiasing Crowdsourced Batches. |
Zhuang, Honglei; Parameswaran, Aditya; Roth, Dan; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26713175 |
2015 Aug; |
| Comment: Getting a handle on HAND in the era of cART. |
Cohen, Ronald A; Navia, Bradford |
Neurology. |
26718565 |
2016 Jan 26; |
| Matrix metalloproteinases as input and output signals for post-myocardial infarction remodeling. |
Lindsey, Merry L; Iyer, Rugmani Padmanabhan; Jung, Mira; DeLeon-Pennell, Kristine Y; Ma, Yonggang |
Journal of molecular and cellular cardiology. |
26721597 |
2016 Feb; |
| Titian: Data Provenance Support in Spark. |
Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, Tyson |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26726305 |
2015 Nov; |
| Conditional Random Fields for Morphological Analysis of Wireless ECG Signals. |
Natarajan, Annamalai; Gaiser, Edward; Angarita, Gustavo; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
26726321 |
2014; |
| LRP5: A novel anti-inflammatory macrophage marker that positively regulates migration and phagocytosis. |
Ma, Yonggang |
Journal of molecular and cellular cardiology. |
26739212 |
2016 Feb; |
| The crossroads of inflammation, fibrosis, and arrhythmia following myocardial infarction. |
Francis Stuart, Samantha D; De Jesus, Nicole M; Lindsey, Merry L; Ripplinger, Crystal M |
Journal of molecular and cellular cardiology. |
26739214 |
2016 Feb; |
| UCSC Data Integrator and Variant Annotation Integrator. |
Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W James |
Bioinformatics (Oxford, England). |
26740527 |
2016 May 01; |
| The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression. |
Böhm, Stefanie; Szakal, Barnabas; Herken, Benjamin W; Sullivan, Meghan R; Mihalevic, Michael J; Kabbinavar, Faiz F; Branzei, Dana; Clark, Nathan L; Bernstein, Kara A |
The Journal of biological chemistry. |
26740628 |
2016 Feb 26; |
| OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. |
Leng, Ning; Choi, Jeea; Chu, Li-Fang; Thomson, James A; Kendziorski, Christina; Stewart, Ron |
Bioinformatics (Oxford, England). |
26743507 |
2016 May 01; |
| Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD. |
Couvy-Duchesne, Baptiste; Ebejer, Jane L; Gillespie, Nathan A; Duffy, David L; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Medland, Sarah E; Wright, Margaret J |
PloS one. |
26745144 |
2016; |
| Heritability and reliability of automatically segmented human hippocampal formation subregions. |
Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
26747746 |
2016 Mar; |
| May the fibrosis be with you: Is discoidin domain receptor 2 the receptor we have been looking for? |
DeLeon-Pennell, Kristine Y |
Journal of molecular and cellular cardiology. |
26772530 |
2016 Feb; |
| TNNT1, TNNT2, and TNNT3: Isoform genes, regulation, and structure-function relationships. |
Wei, Bin; Jin, J-P |
Gene. |
26774798 |
2016 May 10; |
| REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY. |
Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac S |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
26776189 |
2016; |
| SeeDB: Efficient Data-Driven Visualization Recommendations to Support Visual Analytics. |
Vartak, Manasi; Rahman, Sajjadur; Madden, Samuel; Parameswaran, Aditya; Polyzotis, Neoklis |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26779379 |
2015 Sep; |
| Rapid Sampling for Visualizations with Ordering Guarantees. |
Kim, Albert; Blais, Eric; Parameswaran, Aditya; Indyk, Piotr; Madden, Sam; Rubinfeld, Ronitt |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26779380 |
2015 Jan; |
| Abnormal asymmetries in subcortical brain volume in schizophrenia. |
Okada, N; Fukunaga, M; Yamashita, F; Koshiyama, D; Yamamori, H; Ohi, K; Yasuda, Y; Fujimoto, M; Watanabe, Y; Yahata, N; Nemoto, K; Hibar, D P; van Erp, T G M; Fujino, H; Isobe, M; Isomura, S; Natsubori, T; Narita, H; Hashimoto, N; Miyata, J; Koike, S; Takahashi, T; Yamasue, H; Matsuo, K; Onitsuka, T; Iidaka, T; Kawasaki, Y; Yoshimura, R; Watanabe, Y; Suzuki, M; Turner, J A; Takeda, M; Thompson, P M; Ozaki, N; Kasai, K; Hashimoto, R |
Molecular psychiatry. |
26782053 |
2016 10; |
| Quantifying prion disease penetrance using large population control cohorts. |
Minikel, Eric Vallabh; Vallabh, Sonia M; Lek, Monkol; Estrada, Karol; Samocha, Kaitlin E; Sathirapongsasuti, J Fah; McLean, Cory Y; Tung, Joyce Y; Yu, Linda P C; Gambetti, Pierluigi; Blevins, Janis; Zhang, Shulin; Cohen, Yvonne; Chen, Wei; Yamada, Masahito; Hamaguchi, Tsuyoshi; Sanjo, Nobuo; Mizusawa, Hidehiro; Nakamura, Yosikazu; Kitamoto, Tetsuyuki; Collins, Steven J; Boyd, Alison; Will, Robert G; Knight, Richard; Ponto, Claudia; Zerr, Inga; Kraus, Theo F J; Eigenbrod, Sabina; Giese, Armin; Calero, Miguel; de Pedro-Cuesta, Jesús; Haïk, Stéphane; Laplanche, Jean-Louis; Bouaziz-Amar, Elodie; Brandel, Jean-Philippe; Capellari, Sabina; Parchi, Piero; Poleggi, Anna; Ladogana, Anna; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Marshall, Jamie L; Boehnke, Michael; Laakso, Markku; Mohlke, Karen L; Kähler, Anna; Chambert, Kimberly; McCarroll, Steven; Sullivan, Patrick F; Hultman, Christina M; Purcell, Shaun M; Sklar, Pamela; van der Lee, Sven J; Rozemuller, Annemieke; Jansen, Casper; Hofman, Albert; Kraaij, Robert; van Rooij, Jeroen G J; Ikram, M Arfan; Uitterlinden, André G; van Duijn, Cornelia M; Exome Aggregation Consortium (ExAC); Daly, Mark J; MacArthur, Daniel G |
Science translational medicine. |
26791950 |
2016 Jan 20; |
| The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping. |
Ashish, Naveen; Dewan, Peehoo; Toga, Arthur W |
Frontiers in neuroinformatics. |
26793094 |
2015; |
| Randomised trials for the Fitbit generation. |
Dempsey, Walter; Liao, Peng; Klasnja, Pedja; Nahum-Shani, Inbal; Murphy, Susan A |
Significance (Oxford, England). |
26807137 |
2015 Dec 1; |
| Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS. |
Wang, Yunpeng; Thompson, Wesley K; Schork, Andrew J; Holland, Dominic; Chen, Chi-Hua; Bettella, Francesco; Desikan, Rahul S; Li, Wen; Witoelar, Aree; Zuber, Verena; Devor, Anna; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium; Nöthen, Markus M; Rietschel, Marcella; Chen, Qiang; Werge, Thomas; Cichon, Sven; Weinberger, Daniel R; Djurovic, Srdjan; O'Donovan, Michael; Visscher, Peter M; Andreassen, Ole A; Dale, Anders M |
PLoS genetics. |
26808560 |
2016 Jan; |
| REEF: Retainable Evaluator Execution Framework. |
Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, Julia |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
26819493 |
2015 May-Jun; |
| Genetic imaging consortium for addiction medicine: From neuroimaging to genes. |
Mackey, Scott; Kan, Kees-Jan; Chaarani, Bader; Alia-Klein, Nelly; Batalla, Albert; Brooks, Samantha; Cousijn, Janna; Dagher, Alain; de Ruiter, Michiel; Desrivieres, Sylvane; Feldstein Ewing, Sarah W; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Morales, Angelica M; Paulus, Martin P; Paus, Tomas; Pearlson, Godfrey; Schluter, Renée; Momenan, Reza; Schmaal, Lianne; Schumann, Gunter; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Walter, Henrik; Wright, Margaret J; Yucel, Murat; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Thompson, Paul M; Glahn, David C; Garavan, Hugh; Conrod, Patricia |
Progress in brain research. |
26822360 |
2016; |
| Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. |
Ceccarelli, Michele; Barthel, Floris P; Malta, Tathiane M; Sabedot, Thais S; Salama, Sofie R; Murray, Bradley A; Morozova, Olena; Newton, Yulia; Radenbaugh, Amie; Pagnotta, Stefano M; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A; Grifford, Mia; Cherniack, Andrew D; Zhang, Hailei; Poisson, Laila; Carlotti Jr, Carlos Gilberto; Tirapelli, Daniela Pretti da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching C; Yung, W K Alfred; Rabadan, Raul; Huse, Jason; Brat, Daniel J; Lehman, Norman L; Barnholtz-Sloan, Jill S; Zheng, Siyuan; Hess, Kenneth; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee; Akbani, Rehan; Wrensch, Margaret; Haussler, David; Aldape, Kenneth D; Laird, Peter W; Gutmann, David H; TCGA Research Network; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G W |
Cell. |
26824661 |
2016 Jan 28; |
| Characterising resting-state functional connectivity in a large sample of adults with ADHD. |
Mostert, Jeanette C; Shumskaya, Elena; Mennes, Maarten; Onnink, A Marten H; Hoogman, Martine; Kan, Cornelis C; Arias Vasquez, Alejandro; Buitelaar, Jan; Franke, Barbara; Norris, David G |
Progress in neuro-psychopharmacology & biological psychiatry. |
26825495 |
2016 Jun 03; |
| Temporal neutrophil polarization following myocardial infarction. |
Ma, Yonggang; Yabluchanskiy, Andriy; Iyer, Rugmani Padmanabhan; Cannon, Presley L; Flynn, Elizabeth R; Jung, Mira; Henry, Jeffrey; Cates, Courtney A; Deleon-Pennell, Kristine Y; Lindsey, Merry L |
Cardiovascular research. |
26825554 |
2016 May 01; |
| Quantification of private information leakage from phenotype-genotype data: linking attacks. |
Harmanci, Arif; Gerstein, Mark |
Nature methods |
26828419 |
2016 Mar |
| CAreDroid: Adaptation Framework for Android Context-Aware Applications. |
Elmalaki, Salma; Wanner, Lucas; Srivastava, Mani |
Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking. |
26834512 |
2015 Sep; |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis. |
Ip, Camilla L C; Loose, Matthew; Tyson, John R; de Cesare, Mariateresa; Brown, Bonnie L; Jain, Miten; Leggett, Richard M; Eccles, David A; Zalunin, Vadim; Urban, John M; Piazza, Paolo; Bowden, Rory J; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M; Simpson, Jared T; Snutch, Terrance P; Birney, Ewan; Buck, David; Goodwin, Sara; Jansen, Hans J; O'Grady, Justin; Olsen, Hugh E; MinION Analysis and Reference Consortium |
F1000Research. |
26834992 |
2015; |
| Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation. |
Wu, Yirong; Abbey, Craig K; Chen, Xianqiao; Liu, Jie; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth S |
Journal of medical imaging (Bellingham, Wash.). |
26835489 |
2015 Oct; |
| Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data. |
Guo, Wentian; Li, Hui; Zhu, Yitan; Lan, Li; Yang, Shengjie; Drukker, Karen; Morris, Elizabeth; Burnside, Elizabeth; Whitman, Gary; Giger, Maryellen L; Ji, Yuan; Tcga Breast Phenotype Research Group |
Journal of medical imaging (Bellingham, Wash.). |
26835491 |
2015 10; |
| Collaborative Data Analytics with DataHub. |
Bhardwaj, Anant; Karger, David; Subramanyam, Harihar; Deshpande, Amol; Madden, Sam; Wu, Eugene; Elmore, Aaron; Parameswaran, Aditya; Zhang, Rebecca |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26844007 |
2015 Aug; |
| Smart Drill-Down: A New Data Exploration Operator. |
Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26844008 |
2015 Aug; |
| Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms. |
Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, Jennifer |
Proceedings of the ... AAAI Conference on Human Computation and Crowdsourcing. |
26844304 |
2015 Nov; |
| GenAp: a distributed SQL interface for genomic data. |
Kozanitis, Christos; Patterson, David A |
BMC bioinformatics. |
26846841 |
2016 Feb 04; |
| Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. |
Putnam, Nicholas H; O'Connell, Brendan L; Stites, Jonathan C; Rice, Brandon J; Blanchette, Marco; Calef, Robert; Troll, Christopher J; Fields, Andrew; Hartley, Paul D; Sugnet, Charles W; Haussler, David; Rokhsar, Daniel S; Green, Richard E |
Genome research. |
26848124 |
2016 Mar; |
| Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. |
Luo, Yuan; Uzuner, Özlem; Szolovits, Peter |
Briefings in bioinformatics. |
26851224 |
2017 Jan; |
| Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept. |
Franke, Barbara; Stein, Jason L; Ripke, Stephan; Anttila, Verneri; Hibar, Derrek P; van Hulzen, Kimm J E; Arias-Vasquez, Alejandro; Smoller, Jordan W; Nichols, Thomas E; Neale, Michael C; McIntosh, Andrew M; Lee, Phil; McMahon, Francis J; Meyer-Lindenberg, Andreas; Mattheisen, Manuel; Andreassen, Ole A; Gruber, Oliver; Sachdev, Perminder S; Roiz-Santiañez, Roberto; Saykin, Andrew J; Ehrlich, Stefan; Mather, Karen A; Turner, Jessica A; Schwarz, Emanuel; Thalamuthu, Anbupalam; Shugart, Yin Yao; Ho, Yvonne Yw; Martin, Nicholas G; Wright, Margaret J; Schizophrenia Working Group of the Psychiatric Genomics Consortium; ENIGMA Consortium; O'Donovan, Michael C; Thompson, Paul M; Neale, Benjamin M; Medland, Sarah E; Sullivan, Patrick F |
Nature neuroscience. |
26854805 |
2016 Mar; |
| Subcortical volumetric abnormalities in bipolar disorder. |
Hibar, D P; Westlye, L T; van Erp, T G M; Rasmussen, J; Leonardo, C D; Faskowitz, J; Haukvik, U K; Hartberg, C B; Doan, N T; Agartz, I; Dale, A M; Gruber, O; Krämer, B; Trost, S; Liberg, B; Abé, C; Ekman, C J; Ingvar, M; Landén, M; Fears, S C; Freimer, N B; Bearden, C E; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Sprooten, E; Glahn, D C; Pearlson, G D; Emsell, L; Kenney, J; Scanlon, C; McDonald, C; Cannon, D M; Almeida, J; Versace, A; Caseras, X; Lawrence, N S; Phillips, M L; Dima, D; Delvecchio, G; Frangou, S; Satterthwaite, T D; Wolf, D; Houenou, J; Henry, C; Malt, U F; Bøen, E; Elvsåshagen, T; Young, A H; Lloyd, A J; Goodwin, G M; Mackay, C E; Bourne, C; Bilderbeck, A; Abramovic, L; Boks, M P; van Haren, N E M; Ophoff, R A; Kahn, R S; Bauer, M; Pfennig, A; Alda, M; Hajek, T; Mwangi, B; Soares, J C; Nickson, T; Dimitrova, R; Sussmann, J E; Hagenaars, S; Whalley, H C; McIntosh, A M; Thompson, P M; Andreassen, O A |
Molecular psychiatry. |
26857596 |
2016 Dec; |
| ksRepo: a generalized platform for computational drug repositioning. |
Brown, Adam S; Kong, Sek Won; Kohane, Isaac S; Patel, Chirag J |
BMC bioinformatics. |
26860211 |
2016 Feb 09; |
| Durable Disease Control with MEK Inhibition in a Patient with NRAS-mutated Atypical Chronic Myeloid Leukemia. |
Khanna, Vishesh; Pierce, Scott T; Dao, Kim-Hien T; Tognon, Cristina E; Hunt, David E; Junio, Brian; Tyner, Jeffrey W; Druker, Brian J |
Cureus. |
26870618 |
2015 Dec 17; |
| Early developmental gene enhancers affect subcortical volumes in the adult human brain. |
Becker, Martin; Guadalupe, Tulio; Franke, Barbara; Hibar, Derrek P; Renteria, Miguel E; Stein, Jason L; Thompson, Paul M; Francks, Clyde; Vernes, Sonja C; Fisher, Simon E |
Human brain mapping. |
26890892 |
2016 May; |
| Barriers and Negative Nudges: Exploring Challenges in Food Journaling. |
Cordeiro, Felicia; Epstein, Daniel A; Thomaz, Edison; Bales, Elizabeth; Jagannathan, Arvind K; Abowd, Gregory D; Fogarty, James |
Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. |
26894233 |
2015 Apr; |
| DataSpread: Unifying Databases and Spreadsheets. |
Bendre, Mangesh; Sun, Bofan; Zhang, Ding; Zhou, Xinyan; Chang, Kevin ChenChuan; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26900487 |
2015 Aug; |
| Inferring causal molecular networks: empirical assessment through a community-based effort. |
Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; HPN-DREAM Consortium; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach |
Nature methods. |
26901648 |
2016 Apr; |
| The Use of Behavior Change Techniques and Theory in Technologies for Cardiovascular Disease Prevention and Treatment in Adults: A Comprehensive Review. |
Winter, Sandra J; Sheats, Jylana L; King, Abby C |
Progress in cardiovascular diseases. |
26902519 |
2016 May-Jun; |
| Response to Dr Fried & Dr Kievit, and Dr Malhi et al. |
Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Vernooij, M W; Niessen, W J; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hall, G B; van Velzen, L S; van Tol, M-J; van der Wee, N J; Veer, I M; Walter, H; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; McIntosh, A M; Whalley, H C; Sussmann, J E; Godlewska, B R; Fischer, F H; Penninx, B W J H; Thompson, P M; Hibar, D P |
Molecular psychiatry. |
26903270 |
2016 06; |
| Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. |
Sweeney, Timothy E; Braviak, Lindsay; Tato, Cristina M; Khatri, Purvesh |
The Lancet. Respiratory medicine. |
26907218 |
2016 Mar; |
| Estimation and testing for multiple regulation of multivariate mixed outcomes. |
Agniel, Denis; Liao, Katherine P; Cai, Tianxi |
Biometrics. |
26910481 |
2016 Dec; |
| Guidelines for the functional annotation of microRNAs using the Gene Ontology. |
Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth C |
RNA (New York, N.Y.). |
26917558 |
2016 May; |
| Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data. |
Dinov, Ivo D |
GigaScience. |
26918190 |
2016; |
| The Implicitome: A Resource for Rationalizing Gene-Disease Associations. |
Hettne, Kristina M; Thompson, Mark; van Haagen, Herman H H B M; van der Horst, Eelke; Kaliyaperumal, Rajaram; Mina, Eleni; Tatum, Zuotian; Laros, Jeroen F J; van Mulligen, Erik M; Schuemie, Martijn; Aten, Emmelien; Li, Tong Shu; Bruskiewich, Richard; Good, Benjamin M; Su, Andrew I; Kors, Jan A; den Dunnen, Johan; van Ommen, Gert-Jan B; Roos, Marco; 't Hoen, Peter A C; Mons, Barend; Schultes, Erik A |
PloS one. |
26919047 |
2016; |
| Sharing big biomedical data. |
Toga, Arthur W; Dinov, Ivo D |
Journal of big data. |
26929900 |
2015; |
| Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running. |
Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott L |
PloS one |
26930416 |
2016 |
| Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1. |
Onnink, A Marten H; Franke, Barbara; van Hulzen, Kimm; Zwiers, Marcel P; Mostert, Jeanette C; Schene, Aart H; Heslenfeld, Dirk J; Oosterlaan, Jaap; Hoekstra, Pieter J; Hartman, Catharina A; Vasquez, Alejandro Arias; Kan, Cornelis C; Buitelaar, Jan; Hoogman, Martine |
Journal of neural transmission (Vienna, Austria : 1996). |
26935821 |
2016 Aug; |
| Health and population effects of rare gene knockouts in adult humans with related parents. |
Narasimhan, Vagheesh M; Hunt, Karen A; Mason, Dan; Baker, Christopher L; Karczewski, Konrad J; Barnes, Michael R; Barnett, Anthony H; Bates, Chris; Bellary, Srikanth; Bockett, Nicholas A; Giorda, Kristina; Griffiths, Christopher J; Hemingway, Harry; Jia, Zhilong; Kelly, M Ann; Khawaja, Hajrah A; Lek, Monkol; McCarthy, Shane; McEachan, Rosie; O'Donnell-Luria, Anne; Paigen, Kenneth; Parisinos, Constantinos A; Sheridan, Eamonn; Southgate, Laura; Tee, Louise; Thomas, Mark; Xue, Yali; Schnall-Levin, Michael; Petkov, Petko M; Tyler-Smith, Chris; Maher, Eamonn R; Trembath, Richard C; MacArthur, Daniel G; Wright, John; Durbin, Richard; van Heel, David A |
Science (New York, N.Y.). |
26940866 |
2016 Apr 22; |
| Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. |
Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, Eleazar |
PLoS genetics |
26943367 |
2016 Mar |
| Data publication with the structural biology data grid supports live analysis. |
Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Fromme, J Christopher; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr |
Nature communications. |
26947396 |
2016 Mar 07; |
| Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. |
Gasch, Audrey P; Hose, James; Newton, Michael A; Sardi, Maria; Yong, Mun; Wang, Zhishi |
eLife. |
26949252 |
2016; |
| Electrophysiological Endophenotypes for Schizophrenia. |
Owens, Emily M; Bachman, Peter; Glahn, David C; Bearden, Carrie E |
Harvard review of psychiatry. |
26954597 |
2016 Mar-Apr; |
| Age, APOE and sex: Triad of risk of Alzheimer's disease. |
Riedel, Brandalyn C; Thompson, Paul M; Brinton, Roberta Diaz |
The Journal of steroid biochemistry and molecular biology. |
26969397 |
2016 Jun; |
| Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells. |
Liu, Rong; Jin, J-P |
Gene. |
26970176 |
2016 Jul 01; |
| The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume. |
Lupton, Michelle K; Strike, Lachlan; Hansell, Narelle K; Wen, Wei; Mather, Karen A; Armstrong, Nicola J; Thalamuthu, Anbupalam; McMahon, Katie L; de Zubicaray, Greig I; Assareh, Amelia A; Simmons, Andrew; Proitsi, Petroula; Powell, John F; Montgomery, Grant W; Hibar, Derrek P; Westman, Eric; Tsolaki, Magda; Kloszewska, Iwona; Soininen, Hilkka; Mecocci, Patrizia; Velas, Bruno; Lovestone, Simon; Alzheimer's Disease Neuroimaging Initiative; Brodaty, Henry; Ames, David; Trollor, Julian N; Martin, Nicholas G; Thompson, Paul M; Sachdev, Perminder S; Wright, Margaret J |
Neurobiology of aging. |
26973105 |
2016 Apr; |
| Delving into Egocentric Actions. |
Li, Yin; Ye, Zhefan; Rehg, James M |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26973427 |
2015 Jun; |
| Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization. |
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Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26973428 |
2015 Jun; |
| Manifold-valued Dirichlet Processes. |
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Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. |
26973982 |
2015 Jul; |
| NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities. |
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Nucleic acids research |
26975659 |
2016 Jun 02 |
| A large dataset of protein dynamics in the mammalian heart proteome. |
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Scientific data. |
26977904 |
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| Wikidata as a semantic framework for the Gene Wiki initiative. |
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Database : the journal of biological databases and curation |
26989148 |
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| Statistical Inference Models for Image Datasets with Systematic Variations. |
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Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26989336 |
2015 Jun; |
| Tensor factorization toward precision medicine. |
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Briefings in bioinformatics. |
26994614 |
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| A history of breast cancer and older age allow risk stratification of mammographic BI-RADS 3 ratings in the diagnostic setting. |
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Clinical imaging. |
26995570 |
2016 Mar-Apr; |
| Volume and Value of Big Healthcare Data. |
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Journal of medical statistics and informatics. |
26998309 |
2016; |
| A role for the bacterial GATC methylome in antibiotic stress survival. |
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Nature genetics. |
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2016 05; |
| Identifying predictive markers for personalized treatment selection. |
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Biometrics. |
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2016 Dec; |
| Neural basis of reward anticipation and its genetic determinants. |
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Proceedings of the National Academy of Sciences of the United States of America. |
27001827 |
2016 Apr 05; |
| Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach. |
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American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
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2016 Sep; |
| Heritability and genetic correlation between the cerebral cortex and associated white matter connections. |
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Human brain mapping. |
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| Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics. |
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Current protocols in bioinformatics. |
27010334 |
2016 Mar 24; |
| Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. |
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Nature methods. |
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2016 May; |
| Efficient Learning of Continuous-Time Hidden Markov Models for Disease Progression. |
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Advances in neural information processing systems. |
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Database : the journal of biological databases and curation |
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| Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents. |
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Neuroscience and biobehavioral reviews. |
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2016 06; |
| Long-read sequence assembly of the gorilla genome. |
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Science (New York, N.Y.). |
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| Mining Multi-Aspect Reflection of News Events in Twitter: Discovery, Linking and Presentation. |
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Proceedings. IEEE International Conference on Data Mining. |
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| KnowSim: A Document Similarity Measure on Structured Heterogeneous Information Networks. |
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Proceedings. IEEE International Conference on Data Mining. |
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2015 Nov; |
| Multiple testing correction in linear mixed models. |
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Genome biology |
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2016 Apr 01 |
| CIDER: Enabling Robustness-Power Tradeoffs on a Computational Eyeglass. |
Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Ganesan, Deepak; Marlin, Benjamin; Salthouse, Christopher |
Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking. |
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2015 Sep; |
| On Statistical Analysis of Neuroimages with Imperfect Registration. |
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Proceedings. IEEE International Conference on Computer Vision. |
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2015 Dec; |
| Interpolation on the manifold of K component GMMs. |
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Proceedings. IEEE International Conference on Computer Vision. |
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2015 Dec; |
| Brainhack: a collaborative workshop for the open neuroscience community. |
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GigaScience. |
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| Adolescent behavioral and neural reward sensitivity: a test of the differential susceptibility theory. |
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Translational psychiatry. |
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| Design and computational analysis of single-cell RNA-sequencing experiments. |
Bacher, Rhonda; Kendziorski, Christina |
Genome biology. |
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2016 Apr 07; |
| Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length. |
Patel, Chirag J; Manrai, Arjun K; Corona, Erik; Kohane, Isaac S |
International journal of epidemiology. |
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2016 Apr 8; |
| Query-Based Outlier Detection in Heterogeneous Information Networks. |
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Advances in database technology : proceedings. International Conference on Extending Database Technology. |
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2015 Mar; |
| Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study. |
Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative |
PloS one. |
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| ExpertBayes: Automatically refining manually built Bayesian networks. |
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Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. |
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| Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder. |
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Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
27067127 |
2016 09; |
| Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers. |
Jollans, Lee; Zhipeng, Cao; Icke, Ilknur; Greene, Ciara; Kelly, Clare; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert |
Developmental neuropsychology. |
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2016 Jan-Mar; |
| Mesochronal Structure Learning. |
Plis, Sergey; Danks, David; Yang, Jianyu |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
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| Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org. |
Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
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2015 May; |
| Machine Reading for Extraction of Bacteria and Habitat Taxonomies. |
Kordjamshidi, Parisa; Massa, Wouter; Provoost, Thomas; Moens, Marie-Francine |
Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference). |
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2015 Jan; |
| Ringo: Interactive Graph Analytics on Big-Memory Machines. |
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Proceedings. ACM-Sigmod International Conference on Management of Data. |
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2015 May-Jun; |
| A Projection free method for Generalized Eigenvalue Problem with a nonsmooth Regularizer. |
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Proceedings. IEEE International Conference on Computer Vision. |
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2015 Dec; |
| Utilizing uncoded consultation notes from electronic medical records for predictive modeling of colorectal cancer. |
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Artificial intelligence in medicine. |
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| A crowdsourcing workflow for extracting chemical-induced disease relations from free text. |
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Database : the journal of biological databases and curation. |
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| Developing a clinical utility framework to evaluate prediction models in radiogenomics. |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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| Transformation Invariant Control of Voxel-Wise False Discovery Rate. |
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IEEE transactions on medical imaging. |
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| Cognitive profiles and heritability estimates in the Old Order Amish. |
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Psychiatric genetics. |
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| Whole-Genome Sequencing of a Healthy Aging Cohort. |
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Cell. |
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| Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group. |
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Molecular psychiatry. |
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| Incremental Knowledge Base Construction Using DeepDive. |
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Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
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| Mindtagger: A Demonstration of Data Labeling in Knowledge Base Construction. |
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Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
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2015 Aug; |
| MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays. |
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Radiology. |
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| An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem. |
Lu, Songjian; Mandava, Gunasheil; Yan, Gaibo; Lu, Xinghua |
Algorithms for molecular biology : AMB. |
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| Facilitating a culture of responsible and effective sharing of cancer genome data. |
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Nature medicine. |
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| Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks. |
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Bioinformatics (Oxford, England). |
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2016 Jul 15; |
| Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. |
Gangavarapu, Karthik; Babji, Vyshakh; Meißner, Tobias; Su, Andrew I; Good, Benjamin M |
Bioinformatics (Oxford, England). |
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2016 Jul 01; |
| High-performance web services for querying gene and variant annotation. |
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Genome biology. |
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2016 May 06; |
| Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions. |
Dinov, Ivo D; Siegrist, Kyle; Pearl, Dennis K; Kalinin, Alexandr; Christou, Nicolas |
Computational statistics. |
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2016 Jun; |
| Testing differential susceptibility: Plasticity genes, the social environment, and their interplay in adolescent response inhibition. |
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The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. |
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| Markov Boundary Discovery with Ridge Regularized Linear Models. |
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Journal of causal inference. |
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2016 Mar; |
| Pallidum and lateral ventricle volume enlargement in autism spectrum disorder. |
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Psychiatry research. Neuroimaging. |
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2016 Jun 30; |
| Rate-Agnostic (Causal) Structure Learning. |
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Advances in neural information processing systems. |
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| Attention-deficit/hyperactivity disorder. |
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Nature reviews. Disease primers. |
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| Causal discovery and inference: concepts and recent methodological advances. |
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Applied informatics. |
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| A comprehensive tractography study of patients with bipolar disorder and their unaffected siblings. |
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Human brain mapping. |
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| Reactome from a WikiPathways Perspective. |
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PLoS computational biology. |
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| MMP-9 signaling in the left ventricle following myocardial infarction. |
Iyer, Rugmani Padmanabhan; Jung, Mira; Lindsey, Merry L |
American journal of physiology. Heart and circulatory physiology. |
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2016 Jul 01; |
| Genome Editing with CRISPR-Cas9: Can It Get Any Better? |
Haeussler, Maximilian; Concordet, Jean-Paul |
Journal of genetics and genomics = Yi chuan xue bao. |
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| Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain. |
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IEEE signal processing magazine. |
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| Developmentally Sensitive Interaction Effects of Genes and the Social Environment on Total and Subcortical Brain Volumes. |
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PloS one. |
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| ApoE ?4 Is Associated With Cognition, Brain Integrity, and Atrophy in HIV Over Age 60. |
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Journal of acquired immune deficiency syndromes (1999). |
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| A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. |
Fotuhi Siahpirani, Alireza; Ay, Ferhat; Roy, Sushmita |
Genome biology. |
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| Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment. |
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Proceedings. IEEE International Conference on Data Mining. |
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| Knowledge gaps to understanding cardiac macrophage polarization following myocardial infarction. |
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Biochimica et biophysica acta. |
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| MET network in PubMed: a text-mined network visualization and curation system. |
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Database : the journal of biological databases and curation. |
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| Kernel machine score test for pathway analysis in the presence of semi-competing risks. |
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Statistical methods in medical research. |
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| Opinion: Big data biomedicine offers big higher education opportunities. |
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Proceedings of the National Academy of Sciences of the United States of America. |
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| A Database Framework for Classifier Engineering. |
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CEUR workshop proceedings. |
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| Discriminatory power of common genetic variants in personalized breast cancer diagnosis. |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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2016 Feb 27; |
| Rapidly Mixing Gibbs Sampling for a Class of Factor Graphs Using Hierarchy Width. |
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Advances in neural information processing systems. |
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| MULTI-RESOLUTION STATISTICAL ANALYSIS ON GRAPH STRUCTURED DATA IN NEUROIMAGING. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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American journal of human genetics. |
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2016 Jul 7; |
| Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium. |
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Stem cell reports. |
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| Learning mixed graphical models with separate sparsity parameters and stability-based model selection. |
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BMC bioinformatics. |
27294886 |
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| Integrated analysis of gray and white matter alterations in attention-deficit/hyperactivity disorder. |
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NeuroImage. Clinical. |
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2016; |
| Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. |
Bravo, Àlex; Li, Tong Shu; Su, Andrew I; Good, Benjamin M; Furlong, Laura I |
Database : the journal of biological databases and curation. |
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2016; |
| Using genomic annotations increases statistical power to detect eGenes. |
Duong, Dat; Zou, Jennifer; Hormozdiari, Farhad; Sul, Jae Hoon; Ernst, Jason; Han, Buhm; Eskin, Eleazar |
Bioinformatics (Oxford, England). |
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| DeepMeSH: deep semantic representation for improving large-scale MeSH indexing. |
Peng, Shengwen; You, Ronghui; Wang, Hongning; Zhai, Chengxiang; Mamitsuka, Hiroshi; Zhu, Shanfeng |
Bioinformatics (Oxford, England). |
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| PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes. |
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Gene. |
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Philosophy of science. |
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2015 Oct; |
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Proceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.). |
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| Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals. |
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Molecular biology and evolution. |
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2016 Sep; |
| Taming the Wild: A Unified Analysis of Hogwild!-Style Algorithms. |
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Advances in neural information processing systems. |
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2015 Dec; |
| A Utility/Cost Analysis of Breast Cancer Risk Prediction Algorithms. |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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2016 Feb 27; |
| Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment. |
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Schizophrenia bulletin. |
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2017 05 01; |
| Disentangling the autism-anxiety overlap: fMRI of reward processing in a community-based longitudinal study. |
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Translational psychiatry. |
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| A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. |
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PLoS computational biology. |
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| Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial. |
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PloS one. |
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| Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems. |
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Journal of proteome research. |
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| CVXPY: A Python-Embedded Modeling Language for Convex Optimization. |
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Journal of machine learning research : JMLR. |
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| Using the laws of thermodynamics to understand how matrix metalloproteinases coordinate the myocardial response to injury. |
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Metalloproteinases in medicine. |
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| The C677T variant in MTHFR modulates associations between blood-based and cerebrospinal fluid biomarkers of neurodegeneration. |
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Neuroreport. |
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Genome biology. |
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| Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions. |
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Journal of virology. |
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| Genetic Dissection of Cardiac Remodeling in an Isoproterenol-Induced Heart Failure Mouse Model. |
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PLoS genetics. |
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| Higher-order organization of complex networks. |
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Science (New York, N.Y.). |
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| Using automatically extracted information from mammography reports for decision-support. |
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Journal of biomedical informatics. |
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2016 Aug; |
| BigDebug: Debugging Primitives for Interactive Big Data Processing in Spark. |
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Proceedings - International Conference on Software Engineering. International Conference on Software Engineering. |
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2016 May; |
| Interplay between stress response genes associated with attention-deficit hyperactivity disorder and brain volume. |
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Genes, brain, and behavior. |
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2016 09; |
| Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait. |
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IEEE transactions on bio-medical engineering. |
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| Network Lasso: Clustering and Optimization in Large Graphs. |
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KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
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| Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq. |
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Genome research. |
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| Crowdsourcing biomedical research: leveraging communities as innovation engines. |
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Nature reviews. Genetics. |
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| Volumetric and shape analyses of subcortical structures in United States service members with mild traumatic brain injury. |
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Journal of neurology. |
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| On longitudinal prediction with time-to-event outcome: Comparison of modeling options. |
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| Correction: Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial. |
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PloS one. |
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| Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012). |
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Scientific reports. |
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| Comparison of genomic data via statistical distribution. |
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Journal of theoretical biology. |
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2016 Oct 21; |
| Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. |
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Developmental biology. |
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| Brain structural changes following adaptive cognitive training assessed by Tensor-Based Morphometry (TBM). |
Colom, Roberto; Hua, Xue; Martínez, Kenia; Burgaleta, Miguel; Román, Francisco J; Gunter, Jeffrey L; Carmona, Susanna; Jaeggi, Susanne M; Thompson, Paul M |
Neuropsychologia. |
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| Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia. |
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Human brain mapping. |
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| Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records. |
Luo, Yuan; Szolovits, Peter |
Biomedical informatics insights. |
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| Connecting the Dots: From Big Data to Healthy Heart. |
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Circulation. |
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2016 Aug 02; |
| KCNE4 and KCNE5: K(+) channel regulation and cardiac arrhythmogenesis. |
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| Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. |
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Journal of proteome research. |
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2016 Nov 04; |
| Prioritizing individual genetic variants after kernel machine testing using variable selection. |
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Genetic epidemiology. |
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2016 Dec; |
| Quantifying patterns of brain activity: Distinguishing unaffected siblings from participants with ADHD and healthy individuals. |
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NeuroImage. Clinical. |
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| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. |
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Journal of proteome research. |
27490519 |
2016 Nov 04; |
| Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations. |
Dinov, Ivo D; Heavner, Ben; Tang, Ming; Glusman, Gustavo; Chard, Kyle; Darcy, Mike; Madduri, Ravi; Pa, Judy; Spino, Cathie; Kesselman, Carl; Foster, Ian; Deutsch, Eric W; Price, Nathan D; Van Horn, John D; Ames, Joseph; Clark, Kristi; Hood, Leroy; Hampstead, Benjamin M; Dauer, William; Toga, Arthur W |
PloS one. |
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| Apolipoprotein A5 fifteen years anniversary: Lessons from genetic epidemiology. |
Hubacek, Jaroslav A |
Gene. |
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2016 Oct 30; |
| MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS. |
Zhang, Wen; Shi, Jie; Stonnington, Cynthia; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
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2016 Apr; |
| APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE. |
Zhang, Jie; Stonnington, Cynthia; Li, Qingyang; Shi, Jie; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
27499829 |
2016 Apr; |
| Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation. |
Yang, Xinsong; Shi, Lei; Daianu, Madelaine; Tong, Hanghang; Liu, Qingsong; Thompson, Paul |
IEEE transactions on visualization and computer graphics. |
27514058 |
2017 Jan; |
| Defining the sham environment for post-myocardial infarction studies in mice. |
Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Cannon, Presley L; Ma, Yonggang; DeLeon-Pennell, Kristine Y; Jung, Mira; Flynn, Elizabeth R; Henry, Jeffrey B; Bratton, Dustin R; White, Jared A; Fulton, Linda K; Grady, Andrew W; Lindsey, Merry L |
American journal of physiology. Heart and circulatory physiology |
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2016 Sep 01 |
| Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion. |
King, Abby C; Winter, Sandra J; Sheats, Jylana L; Rosas, Lisa G; Buman, Matthew P; Salvo, Deborah; Rodriguez, Nicole M; Seguin, Rebecca A; Moran, Mika; Garber, Randi; Broderick, Bonnie; Zieff, Susan G; Sarmiento, Olga Lucia; Gonzalez, Silvia A; Banchoff, Ann; Dommarco, Juan Rivera |
Translational journal of the American College of Sports Medicine. |
27525309 |
2016 May 15; |
| A comprehensive and scalable database search system for metaproteomics. |
Chatterjee, Sandip; Stupp, Gregory S; Park, Sung Kyu Robin; Ducom, Jean-Christophe; Yates 3rd, John R; Su, Andrew I; Wolan, Dennis W |
BMC genomics. |
27528457 |
2016 08 16; |
| Statistical detection of geographic clusters of resistant Escherichia coli in a regional network with WHONET and SaTScan. |
Park, Rachel; O'Brien, Thomas F; Huang, Susan S; Baker, Meghan A; Yokoe, Deborah S; Kulldorff, Martin; Barrett, Craig; Swift, Jamie; Stelling, John; Centers for Disease Control and Prevention Epicenters Program |
Expert review of anti-infective therapy. |
27530311 |
2016 11; |
| Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. |
Walsh, Roddy; Thomson, Kate L; Ware, James S; Funke, Birgit H; Woodley, Jessica; McGuire, Karen J; Mazzarotto, Francesco; Blair, Edward; Seller, Anneke; Taylor, Jenny C; Minikel, Eric V; Exome Aggregation Consortium; MacArthur, Daniel G; Farrall, Martin; Cook, Stuart A; Watkins, Hugh |
Genetics in medicine : official journal of the American College of Medical Genetics. |
27532257 |
2017 02; |
| Patterns of genic intolerance of rare copy number variation in 59,898 human exomes. |
Ruderfer, Douglas M; Hamamsy, Tymor; Lek, Monkol; Karczewski, Konrad J; Kavanagh, David; Samocha, Kaitlin E; Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G; Fromer, Menachem; Purcell, Shaun M |
Nature genetics. |
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2016 Oct; |
| Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. |
Chu, Li-Fang; Leng, Ning; Zhang, Jue; Hou, Zhonggang; Mamott, Daniel; Vereide, David T; Choi, Jeea; Kendziorski, Christina; Stewart, Ron; Thomson, James A |
Genome biology. |
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2016 Aug 17; |
| Analysis of protein-coding genetic variation in 60,706 humans. |
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Nature. |
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2016 08 18; |
| Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants. |
Paludan-Müller, C; Ahlberg, G; Ghouse, J; Herfelt, C; Svendsen, J H; Haunsø, S; Kanters, J K; Olesen, M S |
Clinical genetics. |
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2017 01; |
| Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations. |
Hoogendoorn, Mark; Berger, Thomas; Schulz, Ava; Stolz, Timo; Szolovits, Peter |
IEEE journal of biomedical and health informatics. |
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2017 Sep; |
| Making a meaningful impact: modelling simultaneous frictional collisions in spatial multibody systems. |
Uchida, Thomas K; Sherman, Michael A; Delp, Scott L |
Proceedings. Mathematical, physical, and engineering sciences. |
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2015 May 08; |
| Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness. |
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Brain structure & function. |
27566607 |
2016 Aug 26; |
| Making the cut: improved ranking and selection for large-scale inference. |
Henderson, Nicholas C; Newton, Michael A |
Journal of the Royal Statistical Society. Series B, Statistical methodology. |
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2016 Sep; |
| Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress. |
Papale, Ligia A; Li, Sisi; Madrid, Andy; Zhang, Qi; Chen, Li; Chopra, Pankaj; Jin, Peng; Kele?, Sündüz; Alisch, Reid S |
Neurobiology of disease. |
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2016 Dec; |
| Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics. |
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Journal of proteome research. |
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2016 Nov 04; |
| Overview of the interactive task in BioCreative V. |
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Database : the journal of biological databases and curation. |
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2016; |
| Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis. |
Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Ameis, Stephanie H; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Fitzgerald, Kate D; Fouche, Jean-Paul; Giménez, Mònica; Gruner, Patricia; Hanna, Gregory L; Hibar, Derrek P; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ikari, Keisuke; Jahanshad, Neda; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kwon, Jun Soo; Lazaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, Joao R; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stevens, Michael C; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; van Wingen, Guido A; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A |
The American journal of psychiatry. |
27609241 |
2017 01 01; |
| Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. |
Sievers, Chelsie K; Zou, Luli S; Pickhardt, Perry J; Matkowskyj, Kristina A; Albrecht, Dawn M; Clipson, Linda; Bacher, Jeffery W; Pooler, B Dustin; Moawad, Fouad J; Cash, Brooks D; Reichelderfer, Mark; Vo, Tien N; Newton, Michael A; Larget, Bret R; Halberg, Richard B |
Gut. |
27609830 |
2016 Sep 08; |
| Perspective: Beyond the genome. |
Leppert, John; Patel, Chirag |
Nature. |
27626778 |
2016 09 15; |
| Surrogate-assisted feature extraction for high-throughput phenotyping. |
Yu, Sheng; Chakrabortty, Abhishek; Liao, Katherine P; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA. |
27632993 |
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| Ruminative brooding is associated with salience network coherence in early pubertal youth. |
Ordaz, Sarah J; LeMoult, Joelle; Colich, Natalie L; Prasad, Gautam; Pollak, Madeline; Popolizio, Morgan; Price, Alexandra; Greicius, Michael; Gotlib, Ian H |
Social cognitive and affective neuroscience. |
27633394 |
2017 Feb 01; |
| Methods to increase reproducibility in differential gene expression via meta-analysis. |
Sweeney, Timothy E; Haynes, Winston A; Vallania, Francesco; Ioannidis, John P; Khatri, Purvesh |
Nucleic acids research. |
27634930 |
2017 01 09; |
| Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults. |
Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI |
Neurobiology of aging. |
27639120 |
2016 12; |
| Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis. |
Shi, Jie; Zhang, Wen; Tang, Miao; Caselli, Richard J; Wang, Yalin |
Medical image analysis. |
27639215 |
2017 Jan; |
| Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction. |
Lindsey, Merry L; Hall, Michael E; Harmancey, Romain; Ma, Yonggang |
Clinical proteomics. |
27651752 |
2016; |
| Actigraphy features for predicting mobility disability in older adults. |
Kheirkhahan, Matin; Tudor-Locke, Catrine; Axtell, Robert; Buman, Matthew P; Fielding, Roger A; Glynn, Nancy W; Guralnik, Jack M; King, Abby C; White, Daniel K; Miller, Michael E; Siddique, Juned; Brubaker, Peter; Rejeski, W Jack; Ranshous, Stephen; Pahor, Marco; Ranka, Sanjay; Manini, Todd M |
Physiological measurement. |
27653966 |
2016 Sep 21; |
| Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running. |
Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott L |
PloS one. |
27656901 |
2016; |
| Just-in-Time Adaptive Interventions (JITAIs) in Mobile Health: Key Components and Design Principles for Ongoing Health Behavior Support. |
Nahum-Shani, Inbal; Smith, Shawna N; Spring, Bonnie J; Collins, Linda M; Witkiewitz, Katie; Tewari, Ambuj; Murphy, Susan A |
Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. |
27663578 |
2016 Sep 23; |
| Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. |
Tao, Chenyang; Nichols, Thomas E; Hua, Xue; Ching, Christopher R K; Rolls, Edmund T; Thompson, Paul M; Feng, Jianfeng; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
27666385 |
2017 Jan 01; |
| Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy. |
Alhusaini, Saud; Whelan, Christopher D; Sisodiya, Sanjay M; Thompson, Paul M |
NeuroImage. Clinical. |
27672556 |
2016; |
| MeSHDD: Literature-based drug-drug similarity for drug repositioning. |
Brown, Adam S; Patel, Chirag J |
Journal of the American Medical Informatics Association : JAMIA. |
27678460 |
2016 Sep 27; |
| Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. |
Zerbino, Daniel R; Ballinger, Tracy; Paten, Benedict; Hickey, Glenn; Haussler, David |
BMC bioinformatics. |
27687569 |
2016 Sep 29; |
| Phase i trials in melanoma: A framework to translate preclinical findings to the clinic. |
Kim, Eunjung; Rebecca, Vito W; Smalley, Keiran S M; Anderson, Alexander R A |
European journal of cancer (Oxford, England : 1990). |
27689717 |
2016 Nov; |
| Novel genetic loci underlying human intracranial volume identified through genome-wide association. |
Adams, Hieab H H (see original citation for additional authors) |
Nature neuroscience. |
27694991 |
2016 12; |
| Ultra-rare disruptive and damaging mutations influence educational attainment in the general population. |
Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart; Nivard, Michel G; Bloemendal, Alex; Bloom, Jonathan M; Goldstein, Jacqueline I; Poterba, Timothy; Seed, Cotton; Handsaker, Robert E; Natarajan, Pradeep; Mägi, Reedik; Gage, Diane; Robinson, Elise B; Metspalu, Andres; Salomaa, Veikko; Suvisaari, Jaana; Purcell, Shaun M; Sklar, Pamela; Kathiresan, Sekar; Daly, Mark J; McCarroll, Steven A; Sullivan, Patrick F; Palotie, Aarno; Esko, Tõnu; Hultman, Christina; Neale, Benjamin M |
Nature neuroscience. |
27694993 |
2016 12; |
| A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways. |
Huang, Tianzhi; Alvarez, Angel A; Pangeni, Rajendra P; Horbinski, Craig M; Lu, Songjian; Kim, Sung-Hak; James, C David; J Raizer, Jeffery; A Kessler, John; Brenann, Cameron W; Sulman, Erik P; Finocchiaro, Gaetano; Tan, Ming; Nishikawa, Ryo; Lu, Xinghua; Nakano, Ichiro; Hu, Bo; Cheng, Shi-Yuan |
Nature communications. |
27698350 |
2016 10 04; |
| Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia. |
Lee, P H; Baker, J T; Holmes, A J; Jahanshad, N; Ge, T; Jung, J-Y; Cruz, Y; Manoach, D S; Hibar, D P; Faskowitz, J; McMahon, K L; de Zubicaray, G I; Martin, N H; Wright, M J; Öngür, D; Buckner, R; Roffman, J; Thompson, P M; Smoller, J W |
Molecular psychiatry. |
27725656 |
2016 Dec; |
| Molecular Autopsy for Sudden Unexpected Death. |
Torkamani, Ali; Muse, Evan D; Spencer, Emily G; Rueda, Manuel; Wagner, Glenn N; Lucas, Jonathan R; Topol, Eric J |
JAMA. |
27727376 |
2016 Oct 11; |
| Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex. |
Guadalupe, Tulio; Mathias, Samuel R; vanErp, Theo G M; Whelan, Christopher D; Zwiers, Marcel P; Abe, Yoshinari; Abramovic, Lucija; Agartz, Ingrid; Andreassen, Ole A; Arias-Vásquez, Alejandro; Aribisala, Benjamin S; Armstrong, Nicola J; Arolt, Volker; Artiges, Eric; Ayesa-Arriola, Rosa; Baboyan, Vatche G; Banaschewski, Tobias; Barker, Gareth; Bastin, Mark E; Baune, Bernhard T; Blangero, John; Bokde, Arun L W; Boedhoe, Premika S W; Bose, Anushree; Brem, Silvia; Brodaty, Henry; Bromberg, Uli; Brooks, Samantha; Büchel, Christian; Buitelaar, Jan; Calhoun, Vince D; Cannon, Dara M; Cattrell, Anna; Cheng, Yuqi; Conrod, Patricia J; Conzelmann, Annette; Corvin, Aiden; Crespo-Facorro, Benedicto; Crivello, Fabrice; Dannlowski, Udo; de Zubicaray, Greig I; de Zwarte, Sonja M C; Deary, Ian J; Desrivières, Sylvane; Doan, Nhat Trung; Donohoe, Gary; Dørum, Erlend S; Ehrlich, Stefan; Espeseth, Thomas; Fernández, Guillén; Flor, Herta; Fouche, Jean-Paul; Frouin, Vincent; Fukunaga, Masaki; Gallinat, Jürgen; Garavan, Hugh; Gill, Michael; Suarez, Andrea Gonzalez; Gowland, Penny; Grabe, Hans J; Grotegerd, Dominik; Gruber, Oliver; Hagenaars, Saskia; Hashimoto, Ryota; Hauser, Tobias U; Heinz, Andreas; Hibar, Derrek P; Hoekstra, Pieter J; Hoogman, Martine; Howells, Fleur M; Hu, Hao; Hulshoff Pol, Hilleke E; Huyser, Chaim; Ittermann, Bernd; Jahanshad, Neda; Jönsson, Erik G; Jurk, Sarah; Kahn, Rene S; Kelly, Sinead; Kraemer, Bernd; Kugel, Harald; Kwon, Jun Soo; Lemaitre, Herve; Lesch, Klaus-Peter; Lochner, Christine; Luciano, Michelle; Marquand, Andre F; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Martinot, Jean-Luc; Mataix-Cols, David; Mather, Karen; McDonald, Colm; McMahon, Katie L; Medland, Sarah E; Menchón, José M; Morris, Derek W; Mothersill, Omar; Maniega, Susana Munoz; Mwangi, Benson; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswaamy, Janardhanan C; Nees, Frauke; Nordvik, Jan E; Onnink, A Marten H; Opel, Nils; Ophoff, Roel; Paillère Martinot, Marie-Laure; Papadopoulos Orfanos, Dimitri; Pauli, Paul; Paus, Tomá?; Poustka, Luise; Reddy, Janardhan Yc; Renteria, Miguel E; Roiz-Santiáñez, Roberto; Roos, Annerine; Royle, Natalie A; Sachdev, Perminder; Sánchez-Juan, Pascual; Schmaal, Lianne; Schumann, Gunter; Shumskaya, Elena; Smolka, Michael N; Soares, Jair C; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Toro, Roberto; Turner, Jessica A; Tzourio-Mazoyer, Nathalie; Uhlmann, Anne; Hernández, Maria Valdés; van den Heuvel, Odile A; van der Meer, Dennis; van Haren, Neeltje E M; Veltman, Dick J; Venkatasubramanian, Ganesan; Vetter, Nora C; Vuletic, Daniella; Walitza, Susanne; Walter, Henrik; Walton, Esther; Wang, Zhen; Wardlaw, Joanna; Wen, Wei; Westlye, Lars T; Whelan, Robert; Wittfeld, Katharina; Wolfers, Thomas; Wright, Margaret J; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, JingJing; Franke, Barbara; Thompson, Paul M; Glahn, David C; Mazoyer, Bernard; Fisher, Simon E; Francks, Clyde |
Brain imaging and behavior. |
27738994 |
2017 Oct; |
| Early matrix metalloproteinase-9 inhibition post-myocardial infarction worsens cardiac dysfunction by delaying inflammation resolution. |
Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Patterson, Nicolle L; Bhowmick, Manishabrata; Flynn, Elizabeth R; Asher, Majdouline; Cannon, Presley L; Deleon-Pennell, Kristine Y; Fields, Gregg B; Lindsey, Merry L |
Journal of molecular and cellular cardiology. |
27746126 |
2016 Nov; |
| Exome chip analyses in adult attention deficit hyperactivity disorder. |
Zayats, T; Jacobsen, K K; Kleppe, R; Jacob, C P; Kittel-Schneider, S; Ribasés, M; Ramos-Quiroga, J A; Richarte, V; Casas, M; Mota, N R; Grevet, E H; Klein, M; Corominas, J; Bralten, J; Galesloot, T; Vasquez, A A; Herms, S; Forstner, A J; Larsson, H; Breen, G; Asherson, P; Gross-Lesch, S; Lesch, K P; Cichon, S; Gabrielsen, M B; Holmen, O L; Bau, C H D; Buitelaar, J; Kiemeney, L; Faraone, S V; Cormand, B; Franke, B; Reif, A; Haavik, J; Johansson, S |
Translational psychiatry. |
27754487 |
2016 10 18; |
| Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations. |
Lu, Songjian; Cai, Chunhui; Yan, Gonghong; Zhou, Zhuan; Wan, Yong; Chen, Vicky; Chen, Lujia; Cooper, Gregory F; Obeid, Lina M; Hannun, Yusuf A; Lee, Adrian V; Lu, Xinghua |
Cancer research. |
27758891 |
2016 Dec 01; |
| Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis. |
Minikel, Eric Vallabh; MacArthur, Daniel G |
Neuron. |
27764668 |
2016 Oct 19; |
| Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. |
Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, Eleazar |
Genetics. |
27765809 |
2016 Oct 07; |
| Causal Clustering for 1-Factor Measurement Models. |
Kummerfeld, Erich; Ramsey, Joseph |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27766182 |
2016; |
| Computational pan-genomics: status, promises and challenges. |
Computational Pan-Genomics Consortium |
Briefings in bioinformatics. |
27769991 |
2016 Oct 21; |
| A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey. |
Patel, Chirag J; Pho, Nam; McDuffie, Michael; Easton-Marks, Jeremy; Kothari, Cartik; Kohane, Isaac S; Avillach, Paul |
Scientific data. |
27779619 |
2016 10 25; |
| A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. |
Korthauer, Keegan D; Chu, Li-Fang; Newton, Michael A; Li, Yuan; Thomson, James; Stewart, Ron; Kendziorski, Christina |
Genome biology. |
27782827 |
2016 Oct 25; |
| Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. |
Links, Amanda E; Draper, David; Lee, Elizabeth; Guzman, Jessica; Valivullah, Zaheer; Maduro, Valerie; Lebedev, Vlad; Didenko, Maxim; Tomlin, Garrick; Brudno, Michael; Girdea, Marta; Dumitriu, Sergiu; Haendel, Melissa A; Mungall, Christopher J; Smedley, Da |
Frontiers in medicine. |
27785453 |
2016; |
| Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. |
Liao, Katherine P; Sparks, Jeffrey A; Hejblum, Boris P; Kuo, I-Hsin; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Gainer, Vivian S; Liu, Weidong; Cai, T Tony; Sokolove, Jeremy; Cai, Tianxi |
Arthritis & rheumatology (Hoboken, N.J.). |
27792870 |
2017 Apr; |
| Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met? |
Norden, Justin; Smuck, Matthew; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy |
The spine journal : official journal of the North American Spine Society. |
27793759 |
2017 Jan; |
| Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. |
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A; Lennartsson, Andreas; Drabløs, Finn; Ramilowski, Jordan A; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R R; Kasukawa, Takeya; Kawaji, Hideya |
Nucleic acids research. |
27794045 |
2017 Jan 04; |
| Abundant Inverse Regression using Sufficient Reduction and its Applications. |
Kim, Hyunwoo J; Smith, Brandon M; Adluru, Nagesh; Dyer, Charles R; Johnson, Sterling C; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. |
27796010 |
2016 Oct; |
| Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects. |
Zou, James; Valiant, Gregory; Valiant, Paul; Karczewski, Konrad; Chan, Siu On; Samocha, Kaitlin; Lek, Monkol; Sunyaev, Shamil; Daly, Mark; MacArthur, Daniel G |
Nature communications. |
27796292 |
2016 Oct 31; |
| Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging. |
Kim, Won Hwa; Hwang, Seong Jae; Adluru, Nagesh; Johnson, Sterling C; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. |
27807594 |
2016 Oct; |
| Enabling an Open Data Ecosystem for the Neurosciences. |
Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian |
Neuron. |
27810004 |
2016 Nov 02; |
| Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks. |
Hwang, Seong Jae; Adluru, Nagesh; Collins, Maxwell D; Ravi, Sathya N; Bendlin, Barbara B; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
27812274 |
2016 Jun-Jul; |
| T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease. |
Fu, Katherine A; Nathan, Romil; Dinov, Ivo D; Li, Junning; Toga, Arthur W |
Frontiers in neurology. |
27812347 |
2016; |
| Tensor Spectral Clustering for Partitioning Higher-order Network Structures. |
Benson, Austin R; Gleich, David F; Leskovec, Jure |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
27812399 |
2015; |
| Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity. |
Oldehinkel, Marianne; Beckmann, Christian F; Pruim, Raimon H R; van Oort, Erik S B; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
27812554 |
2016 Jul; |
| Gait biomechanics in the era of data science. |
Ferber, Reed; Osis, Sean T; Hicks, Jennifer L; Delp, Scott L |
Journal of biomechanics. |
27814971 |
2016 12 08; |
| Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder. |
Oldehinkel, Marianne; Beckmann, Christian F; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten |
NeuroImage. Clinical. |
27818941 |
2016; |
| Growing Wikipedia Across Languages via Recommendation. |
Wulczyn, Ellery; West, Robert; Zia, Leila; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
27819073 |
2016 Apr; |
| Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia. |
Kochunov, Peter; Rowland, Laura M; Fieremans, Els; Veraart, Jelle; Jahanshad, Neda; Eskandar, George; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Shukla, Dinesh; Sampath, Hemalatha; Thompson, Paul M; Hong, L Elliot |
Proceedings of the National Academy of Sciences of the United States of America. |
27834215 |
2016 Nov 22; |
| Private and Efficient Query Processing on Outsourced Genomic Databases. |
Ghasemi, Reza; Al Aziz, Md Momin; Mohammed, Noman; Dehkordi, Massoud Hadian; Jiang, Xiaoqian |
IEEE journal of biomedical and health informatics. |
27834660 |
2017 09; |
| A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. |
Zuo, Chandler; Chen, Kailei; Kele?, Sündüz |
Journal of computational biology : a journal of computational molecular cell biology. |
27835030 |
2016 Nov 11; |
| Topological false discovery rates for brain mapping based on signal height. |
Li, Junning; Gahm, Jin Kyu; Shi, Yonggang; Toga, Arthur W |
NeuroImage. |
27838286 |
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| Bias correction in species distribution models: pooling survey and collection data for multiple species. |
Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A |
Methods in ecology and evolution. |
27840673 |
2015 Apr; |
| A network-based phenotype mapping approach to identify genes that modulate drug response phenotypes. |
Cairns, Junmei; Ung, Choong Yong; da Rocha, Edroaldo Lummertz; Zhang, Cheng; Correia, Cristina; Weinshilboum, Richard; Wang, Liewei; Li, Hu |
Scientific reports. |
27841317 |
2016 Nov 14; |
| Development of a dynamic computational model of social cognitive theory. |
Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby C |
Translational behavioral medicine. |
27848208 |
2016 12; |
| node2vec: Scalable Feature Learning for Networks. |
Grover, Aditya; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27853626 |
2016 Aug; |
| Interpretable Decision Sets: A Joint Framework for Description and Prediction. |
Lakkaraju, Himabindu; Bach, Stephen H; Jure, Leskovec |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27853627 |
2016 Aug; |
| Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set. |
Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Huang, Erich; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Zuley, Margarita; Net, Jose M; Sutton, Elizabeth; Whitman, Gary J; Morris, Elizabeth; Perou, Charles M; Ji, Yuan; Giger, Maryellen L |
NPJ breast cancer. |
27853751 |
2016; |
| RNA-Binding Protein IGF2BP1 in Cutaneous Squamous Cell Carcinoma. |
Kim, TaeWon; Havighurst, Thomas; Kim, KyungMann; Hebbring, Scott J; Ye, Zhan; Aylward, Juliet; Keles, Sunduz; Xu, Yaohui G; Spiegelman, Vladimir S |
The Journal of investigative dermatology. |
27856289 |
2017 Mar; |
| Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets. |
McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, Piotr |
Annals of the New York Academy of Sciences. |
27862010 |
2017 Jan; |
| Colocalization of GWAS and eQTL Signals Detects Target Genes. |
Hormozdiari, Farhad; van de Bunt, Martijn; Segrè, Ayellet V; Li, Xiao; Joo, Jong Wha J; Bilow, Michael; Sul, Jae Hoon; Sankararaman, Sriram; Pasaniuc, Bogdan; Eskin, Eleazar |
American journal of human genetics. |
27866706 |
2016 Dec 01; |
| Multimodal neuroimaging of male and female brain structure in health and disease across the life span. |
Jahanshad, Neda; Thompson, Paul M |
Journal of neuroscience research. |
27870421 |
2017 01 02; |
| A review of validation strategies for computational drug repositioning. |
Brown, Adam S; Patel, Chirag J |
Briefings in bioinformatics. |
27881429 |
2018 01 01; |
| 3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease. |
Jin, Yan; Huang, Chao; Daianu, Madelaine; Zhan, Liang; Dennis, Emily L; Reid, Robert I; Jack Jr, Clifford R; Zhu, Hongtu; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
27883250 |
2017 Mar; |
| Enabling an Open Data Ecosystem for the Neurosciences. |
Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian |
Neuron. |
27883904 |
2016 Nov 23; |
| Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine. |
Giacomini, Kathleen M; Yee, Sook Wah; Mushiroda, Taisei; Weinshilboum, Richard M; Ratain, Mark J; Kubo, Michiaki |
Nature reviews. Drug discovery. |
27885282 |
2017 Jan; |
| The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. |
Jain, Miten; Olsen, Hugh E; Paten, Benedict; Akeson, Mark |
Genome biology. |
27887629 |
2016 11 25; |
| PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION. |
Wang, Sheng; Qu, Meng; Peng, Jian |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896959 |
2017; |
| EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY. |
Haynes, Winston A; Vallania, Francesco; Liu, Charles; Bongen, Erika; Tomczak, Aurelie; Andres-Terrè, Marta; Lofgren, Shane; Tam, Andrew; Deisseroth, Cole A; Li, Matthew D; Sweeney, Timothy E; Khatri, Purvesh |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896970 |
2017; |
| DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES. |
Yang, Shan; Cline, Melissa; Zhang, Can; Paten, Benedict; Lincoln, Stephen E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896972 |
2017; |
| THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE. |
Garmire, Lana X; Gliske, Stephen; Nguyen, Quynh C; Chen, Jonathan H; Nemati, Shamim; VAN Horn, John D; Moore, Jason H; Shreffler, Carol; Dunn, Michelle |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27897014 |
2016; |
| PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. |
Mi, Huaiyu; Huang, Xiaosong; Muruganujan, Anushya; Tang, Haiming; Mills, Caitlin; Kang, Diane; Thomas, Paul D |
Nucleic acids research. |
27899595 |
2017 Jan 04; |
| The Human Phenotype Ontology in 2017. |
Köhler, Sebastian; Vasilevsky, Nicole A; Engelstad, Mark; Foster, Erin; McMurry, Julie; Aymé, Ségolène; Baynam, Gareth; Bello, Susan M; Boerkoel, Cornelius F; Boycott, Kym M; Brudno, Michael; Buske, Orion J; Chinnery, Patrick F; Cipriani, Valentina; Connell, Laureen E; Dawkins, Hugh J S; DeMare, Laura E; Devereau, Andrew D; de Vries, Bert B A; Firth, Helen V; Freson, Kathleen; Greene, Daniel; Hamosh, Ada; Helbig, Ingo; Hum, Courtney; Jähn, Johanna A; James, Roger; Krause, Roland; F Laulederkind, Stanley J; Lochmüller, Hanns; Lyon, Gholson J; Ogishima, Soichi; Olry, Annie; Ouwehand, Willem H; Pontikos, Nikolas; Rath, Ana; Schaefer, Franz; Scott, Richard H; Segal, Michael; Sergouniotis, Panagiotis I; Sever, Richard; Smith, Cynthia L; Straub, Volker; Thompson, Rachel; Turner, Catherine; Turro, Ernest; Veltman, Marijcke W M; Vulliamy, Tom; Yu, Jing; von Ziegenweidt, Julie; Zankl, Andreas; Züchner, Stephan; Zemojtel, Tomasz; Jacobsen, Julius O B; Groza, Tudor; Smedley, Damian; Mungall, Christopher J; Haendel, Melissa; Robinson, Peter N |
Nucleic acids research. |
27899602 |
2017 Jan 04; |
| The ExAC browser: displaying reference data information from over 60 000 exomes. |
Karczewski, Konrad J; Weisburd, Ben; Thomas, Brett; Solomonson, Matthew; Ruderfer, Douglas M; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin E; Cummings, Beryl B; Birnbaum, Daniel; The Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G |
Nucleic acids research. |
27899611 |
2017 Jan 04; |
| The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. |
Mungall, Christopher J; McMurry, Julie A; Köhler, Sebastian; Balhoff, James P; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J P; Jacobsen, Julius O B; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N; Haendel, Melissa A |
Nucleic acids research. |
27899636 |
2017 01 04; |
| The UCSC Genome Browser database: 2017 update. |
Tyner, Cath; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S; Karolchik, Donna; Lee, Brian T; Lee, Christopher M; Nejad, Parisa; Raney, Brian J; Rosenbloom, Kate R; Speir, Matthew L; Villarreal, Chris; Vivian, John; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James |
Nucleic acids research. |
27899642 |
2017 Jan 04; |
| Childhood adversity impacts on brain subcortical structures relevant to depression. |
Frodl, Thomas; Janowitz, Deborah; Schmaal, Lianne; Tozzi, Leonardo; Dobrowolny, Henrik; Stein, Dan J; Veltman, Dick J; Wittfeld, Katharina; van Erp, Theo G M; Jahanshad, Neda; Block, Andrea; Hegenscheid, Katrin; Völzke, Henry; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Frey, Eva Maria; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Schnell, Knut; Grotegerd, Dominik; Arolt, Volker; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Zurowski, Bartosz; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Thompson, Paul M; Hibar, Derrek P; Dannlowski, Udo; Grabe, Hans J |
Journal of psychiatric research. |
27918926 |
2017 Mar; |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. |
Deutsch, Eric W; Csordas, Attila; Sun, Zhi; Jarnuczak, Andrew; Perez-Riverol, Yasset; Ternent, Tobias; Campbell, David S; Bernal-Llinares, Manuel; Okuda, Shujiro; Kawano, Shin; Moritz, Robert L; Carver, Jeremy J; Wang, Mingxun; Ishihama, Yasushi; Bandeira, Nuno; Hermjakob, Henning; Vizcaíno, Juan Antonio |
Nucleic acids research. |
27924013 |
2017 Jan 04; |
| Large-scale identification of patients with cerebral aneurysms using natural language processing. |
Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Can, Anil; Abd-El-Barr, Muhammad; Gainer, Vivian; Shadick, Nancy A; Murphy, Shawn; Cai, Tianxi; Savova, Guergana; Weiss, Scott T; Du, Rose |
Neurology. |
27927935 |
2017 Jan 10; |
| Influence of donor age on induced pluripotent stem cells. |
Lo Sardo, Valentina; Ferguson, William; Erikson, Galina A; Topol, Eric J; Baldwin, Kristin K; Torkamani, Ali |
Nature biotechnology. |
27941802 |
2017 Jan; |
| First Steps Into the Brave New Transdiscipline of Mobile Health. |
Spring, Bonnie; Pfammatter, Angela; Alshurafa, Nabil |
JAMA cardiology. |
27973672 |
2017 Jan 01; |
| Heritability of the shape of subcortical brain structures in the general population. |
Roshchupkin, Gennady V; Gutman, Boris A; Vernooij, Meike W; Jahanshad, Neda; Martin, Nicholas G; Hofman, Albert; McMahon, Katie L; van der Lee, Sven J; van Duijn, Cornelia M; de Zubicaray, Greig I; Uitterlinden, André G; Wright, Margaret J; Niessen, Wiro J; Thompson, Paul M; Ikram, M Arfan; Adams, Hieab H H |
Nature communications. |
27976715 |
2016 Dec 15; |
| Cardiovascular proteomics in the era of big data: experimental and computational advances. |
Lam, Maggie P Y; Lau, Edward; Ng, Dominic C M; Wang, Ding; Ping, Peipei |
Clinical proteomics. |
27980500 |
2016; |
| Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks. |
Strigel, Roberta M; Rollenhagen, Jennifer; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie; DeMartini, Wendy B |
Academic radiology. |
27986508 |
2017 Apr; |
| mCrave: Continuous Estimation of Craving During Smoking Cessation. |
Chatterjee, Soujanya; Hovsepian, Karen; Sarker, Hillol; Saleheen, Nazir; al'Absi, Mustafa; Atluri, Gowtham; Ertin, Emre; Lam, Cho; Lemieux, Andrine; Nakajima, Motohiro; Spring, Bonnie; Wetter, David W; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
27990501 |
2016 Sep; |
| Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers. |
Spagnolo, Daniel M; Gyanchandani, Rekha; Al-Kofahi, Yousef; Stern, Andrew M; Lezon, Timothy R; Gough, Albert; Meyer, Dan E; Ginty, Fiona; Sarachan, Brion; Fine, Jeffrey; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra |
Journal of pathology informatics. |
27994939 |
2016; |
| Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome. |
Garlid, Anders Olav; Polson, Jennifer S; Garlid, Keith D; Hermjakob, Henning; Ping, Peipei |
Handbook of experimental pharmacology. |
27995389 |
2017; |
| Proteomics Research in Cardiovascular Medicine and Biomarker Discovery. |
Lam, Maggie P Y; Ping, Peipei; Murphy, Elizabeth |
Journal of the American College of Cardiology. |
28007144 |
2016 Dec 27; |
| Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans. |
Wang, Junping; Braskie, Meredith N; Hafzalla, George W; Faskowitz, Joshua; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Yu, Chunshui; Thompson, Paul M |
NeuroImage. |
28017919 |
2017 Feb 15; |
| Allostatic load and reduced cortical thickness in schizophrenia. |
Chiappelli, Joshua; Kochunov, Peter; Savransky, Anya; Fisseha, Feven; Wisner, Krista; Du, Xiaoming; Rowland, Laura M; Hong, L Elliot |
Psychoneuroendocrinology. |
28027496 |
2017 Mar; |
| A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders. |
Nahum-Shani, Inbal; Ertefaie, Ashkan; Lu, Xi Lucy; Lynch, Kevin G; McKay, James R; Oslin, David W; Almirall, Daniel |
Addiction (Abingdon, England). |
28029718 |
2017 May; |
| Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures. |
Wang, Gang; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
28033566 |
2017 Feb 15; |
| Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis. |
Zhou, Zhuan; Luo, Aiping; Shrivastava, Indira; He, Mingjing; Huang, Yi; Bahar, Ivet; Liu, Zhihua; Wan, Yong |
EBioMedicine. |
28040451 |
2017 Feb; |
| Structured Matrix Completion with Applications to Genomic Data Integration. |
Cai, Tianxi; Cai, T Tony; Zhang, Anru |
Journal of the American Statistical Association. |
28042188 |
2016; |
| Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age? |
Bartholdy, Savani; Allen, Karina; Hodsoll, John; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Mennigen, Eva; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike |
European child & adolescent psychiatry. |
28050706 |
2017 Jun; |
| Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease. |
Mayers, Michael D; Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Journal of proteome research. |
28052195 |
2017 Feb 03; |
| Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries. |
DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott L |
Journal of biomechanics. |
28057351 |
2017 Feb 08; |
| mSieve: Differential Behavioral Privacy in Time Series of Mobile Sensor Data. |
Saleheen, Nazir; Chakraborty, Supriyo; Ali, Nasir; Mahbubur Rahman, Md; Hossain, Syed Monowar; Bari, Rummana; Buder, Eugene; Srivastava, Mani; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
28058408 |
2016 Sep; |
| Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data. |
Sarker, Hillol; Tyburski, Matthew; Rahman, Md Mahbubur; Hovsepian, Karen; Sharmin, Moushumi; Epstein, David H; Preston, Kenzie L; Furr-Holden, C Debra; Milam, Adam; Nahum-Shani, Inbal; al'Absi, Mustafa; Kumar, Santosh |
Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. |
28058409 |
2016 May; |
| Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment. |
Zhang, Jie; Shi, Jie; Stonnington, Cynthia; Li, Qingyang; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. |
28066843 |
2016 Oct; |
| Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. |
Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Carolyn J; Ritchie, Marylyn; Schmitt, Charles; Sarigiannis, Denis A; Thomas, Duncan C; Wishart, David; Balshaw, David M; Patel, Chirag J |
Annual review of public health. |
28068484 |
2017 03 20; |
| EmptyHeaded: A Relational Engine for Graph Processing. |
Aberger, Christopher R; Tu, Susan; Olukotun, Kunle; Ré, Christopher |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28077912 |
2016 Jun-Jul; |
| Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information. |
Li, Xiao; Dunn, Jessilyn; Salins, Denis; Zhou, Gao; Zhou, Wenyu; Schüssler-Fiorenza Rose, Sophia Miryam; Perelman, Dalia; Colbert, Elizabeth; Runge, Ryan; Rego, Shannon; Sonecha, Ria; Datta, Somalee; McLaughlin, Tracey; Snyder, Michael P |
PLoS biology. |
28081144 |
2017 Jan; |
| Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies. |
Nikolova, Olga; Moser, Russell; Kemp, Christopher; Gönen, Mehmet; Margolin, Adam A |
Bioinformatics (Oxford, England). |
28082455 |
2017 May 01; |
| Evaluating surrogate marker information using censored data. |
Parast, Layla; Cai, Tianxi; Tian, Lu |
Statistics in medicine. |
28088843 |
2017 May 20; |
| Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG. |
Natarajan, Annamalai; Angarita, Gustavo; Gaiser, Edward; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin M |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
28090605 |
2016 Sep; |
| Hierarchical Span-Based Conditional Random Fields for Labeling and Segmenting Events in Wearable Sensor Data Streams. |
Adams, Roy J; Saleheen, Nazir; Thomaz, Edison; Parate, Abhinav; Kumar, Santosh; Marlin, Benjamin M |
Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. |
28090606 |
2016 Jun; |
| Brain substrates of reward processing and the ?-opioid receptor: a pathway into pain? |
Nees, Frauke; Becker, Susanne; Millenet, Sabina; Banaschewski, Tobias; Poustka, Luise; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Desrivières, Sylvane; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Flor, Herta; IMAGEN consortium |
Pain. |
28092323 |
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| Novel genetic loci associated with hippocampal volume. |
Hibar, Derrek P (see original citation for additional authors) |
Nature communications. |
28098162 |
2017 Jan 18; |
| White matter hyperintensities correlate to cognition and fiber tract integrity in older adults with HIV. |
Watson, Christa; Busovaca, Edgar; Foley, Jessica M; Allen, I Elaine; Schwarz, Christopher G; Jahanshad, Neda; Nir, Talia M; Esmaeili-Firidouni, Pardis; Milanini, Benedetta; Rosen, Howard; Carmichael, Owen T; Thompson, Paul M; Valcour, Victor G |
Journal of neurovirology. |
28101804 |
2017 Jun; |
| Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies. |
Bilow, Michael; Crespo, Fernando; Pan, Zhicheng; Eskin, Eleazar; Eyheramendy, Susana |
Genetics. |
28132020 |
2017 Mar; |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. |
Rice, Edward S; Kohno, Satomi; John, John St; Pham, Son; Howard, Jonathan; Lareau, Liana F; O'Connell, Brendan L; Hickey, Glenn; Armstrong, Joel; Deran, Alden; Fiddes, Ian; Platt 2nd, Roy N; Gresham, Cathy; McCarthy, Fiona; Kern, Colin; Haan, David; Phan, Tan; Schmidt, Carl; Sanford, Jeremy R; Ray, David A; Paten, Benedict; Guillette Jr, Louis J; Green, Richard E |
Genome research. |
28137821 |
2017 May; |
| CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. |
Griffith, Malachi; Spies, Nicholas C; Krysiak, Kilannin; McMichael, Joshua F; Coffman, Adam C; Danos, Arpad M; Ainscough, Benjamin J; Ramirez, Cody A; Rieke, Damian T; Kujan, Lynzey; Barnell, Erica K; Wagner, Alex H; Skidmore, Zachary L; Wollam, Amber; Liu, Connor J; Jones, Martin R; Bilski, Rachel L; Lesurf, Robert; Feng, Yan-Yang; Shah, Nakul M; Bonakdar, Melika; Trani, Lee; Matlock, Matthew; Ramu, Avinash; Campbell, Katie M; Spies, Gregory C; Graubert, Aaron P; Gangavarapu, Karthik; Eldred, James M; Larson, David E; Walker, Jason R; Good, Benjamin M; Wu, Chunlei; Su, Andrew I; Dienstmann, Rodrigo; Margolin, Adam A; Tamborero, David; Lopez-Bigas, Nuria; Jones, Steven J M; Bose, Ron; Spencer, David H; Wartman, Lukas D; Wilson, Richard K; Mardis, Elaine R; Griffith, Obi L |
Nature genetics. |
28138153 |
2017 Jan 31; |
| Towards Globally Optimal Crowdsourcing Quality Management: The Uniform Worker Setting. |
Das Sarma, Akash; Parameswaran, Aditya; Widom, Jennifer |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28149000 |
2016 Jun-Jul; |
| Decibel: The Relational Dataset Branching System. |
Maddox, Michael; Goehring, David; Elmore, Aaron J; Madden, Samuel; Parameswaran, Aditya; Deshpande, Amol |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
28149668 |
2016 May; |
| Brain imaging genetics in ADHD and beyond - Mapping pathways from gene to disorder at different levels of complexity. |
Klein, Marieke; Onnink, Marten; van Donkelaar, Marjolein; Wolfers, Thomas; Harich, Benjamin; Shi, Yan; Dammers, Janneke; Arias-Vásquez, Alejandro; Hoogman, Martine; Franke, Barbara |
Neuroscience and biobehavioral reviews. |
28159610 |
2017 Sep; |
| GMove: Group-Level Mobility Modeling Using Geo-Tagged Social Media. |
Zhang, Chao; Zhang, Keyang; Yuan, Quan; Zhang, Luming; Hanratty, Tim; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
28163978 |
2016 Aug; |
| DPClass: An Effective but Concise Discriminative Patterns-Based Classification Framework. |
Shang, Jingbo; Tong, Wenzhu; Peng, Jian; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
28163983 |
2016 May; |
| Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS. |
Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander |
Journal of chemical information and modeling. |
28165734 |
2017 Mar 27; |
| Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study. |
Manini, Todd M; Beavers, Daniel P; Pahor, Marco; Guralnik, Jack M; Spring, Bonnie; Church, Timothy S; King, Abby C; Folta, Sara C; Glynn, Nancy W; Marsh, Anthony P; Gill, Thomas M; LIFE study investigators |
Journal of the American Geriatrics Society. |
28168689 |
2017 May; |
| MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance. |
Shang, Jingbo; Peng, Jian; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
28174677 |
2016 May; |
| Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients. |
Cheng, Qian; Shang, Jingbo; Juen, Joshua; Han, Jiawei; Schatz, Bruce |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
28174760 |
2016 Oct; |
| Network-level assessment of reward-related activation in patients with ADHD and healthy individuals. |
von Rhein, Daniel; Beckmann, Christian F; Franke, Barbara; Oosterlaan, Jaap; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina A; Luman, Marjolein; Faraone, Stephen V; Cools, Roshan; Buitelaar, Jan K; Mennes, Maarten |
Human brain mapping. |
28176434 |
2017 05; |
| Squish: Near-Optimal Compression for Archival of Relational Datasets. |
Gao, Yihan; Parameswaran, Aditya |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
28180028 |
2016 Aug; |
| Independent value added by diffusion MRI for prediction of cognitive function in older adults. |
Scott, Julia A; Tosun, Duygu; Braskie, Meredith N; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI |
NeuroImage. Clinical. |
28180075 |
2017; |
| Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making. |
Beam, Andrew L; Kartoun, Uri; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Shaw, Stanley Y; Kohane, Isaac S |
Scientific reports. |
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2017 Feb 09; |
| Dual PI3K/mTOR Inhibition in Colorectal Cancers withAPCandPIK3CAMutations. |
Foley, Tyler M; Payne, Susan N; Pasch, Cheri A; Yueh, Alex E; Van De Hey, Dana R; Korkos, Demetra P; Clipson, Linda; Maher, Molly E; Matkowskyj, Kristina A; Newton, Michael A; Deming, Dustin A |
Molecular cancer research : MCR. |
28184015 |
2017 02 09; |
| Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. |
Kosmicki, Jack A; Samocha, Kaitlin E; Howrigan, Daniel P; Sanders, Stephan J; Slowikowski, Kamil; Lek, Monkol; Karczewski, Konrad J; Cutler, David J; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D; Neale, Benjamin M; MacArthur, Daniel G; Wall, Dennis P; Robinson, Elise B; Daly, Mark J |
Nature genetics. |
28191890 |
2017 Apr; |
| The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease. |
Buck Louis, Germaine M; Smarr, Melissa M; Patel, Chirag J |
Current environmental health reports. |
28194614 |
2017 Mar; |
| Causal Discovery from Subsampled Time Series Data by Constraint Optimization. |
Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David |
JMLR workshop and conference proceedings. |
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2016 Aug; |
| Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay. |
Shi, Yu; Kim, Myunghwan; Chatterjee, Shaunak; Tiwari, Mitul; Ghosh, Souvik; Rosales, Rómer |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
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2016 Aug; |
| Interactive Data Exploration with Smart Drill-Down. |
Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya |
Proceedings. International Conference on Data Engineering. |
28210096 |
2016 May; |
| FacetGist: Collective Extraction of Document Facets in Large Technical Corpora. |
Siddiqui, Tarique; Ren, Xiang; Parameswaran, Aditya; Han, Jiawei |
Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. |
28210517 |
2016 Oct; |
| A general statistical framework for subgroup identification and comparative treatment scoring. |
Chen, Shuai; Tian, Lu; Cai, Tianxi; Yu, Menggang |
Biometrics. |
28211943 |
2017 Dec; |
| Septic Cardiomyopathy: Getting to the Heart of the Matter. |
Sweeney, Timothy E; Khatri, Purvesh |
Critical care medicine. |
28212222 |
2017 Mar; |
| Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx). |
Solbrig, Harold R; Prud'hommeaux, Eric; Grieve, Grahame; McKenzie, Lloyd; Mandel, Joshua C; Sharma, Deepak K; Jiang, Guoqian |
Journal of biomedical informatics. |
28213144 |
2017 03; |
| Estimating Causal Effects with Ancestral Graph Markov Models. |
Malinsky, Daniel; Spirtes, Peter |
JMLR workshop and conference proceedings. |
28217244 |
2016 Aug; |
| Mapping DNA methylation with high-throughput nanopore sequencing. |
Rand, Arthur C; Jain, Miten; Eizenga, Jordan M; Musselman-Brown, Audrey; Olsen, Hugh E; Akeson, Mark; Paten, Benedict |
Nature methods. |
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| Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis. |
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Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. |
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JMLR workshop and conference proceedings. |
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Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
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Magnetic resonance in medicine. |
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AMIA ... Annual Symposium proceedings. AMIA Symposium. |
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CEUR workshop proceedings. |
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Proceedings. ACM-Sigmod International Conference on Management of Data. |
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KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
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The American journal of psychiatry. |
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Big data. |
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IEEE transactions on medical imaging. |
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Journal of perinatology : official journal of the California Perinatal Association. |
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Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. |
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Nucleic acids research. |
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Journal of the American Medical Informatics Association : JAMIA. |
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The Journal of experimental biology. |
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Computer. |
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SIGMOD record. |
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IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society. |
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ACM transactions on intelligent systems and technology. |
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Transactions of the Association for Computational Linguistics. |
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Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. |
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Genome research. |
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Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
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Genome research. |
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Artificial intelligence in medicine. |
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Trends in pharmacological sciences. |
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Database : the journal of biological databases and curation. |
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Journal of biomedical informatics. |
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Genome biology. |
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Genetics in medicine : official journal of the American College of Medical Genetics. |
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| Combining clinical and genomics queries using i2b2 - Three methods. |
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PloS one. |
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| Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. |
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Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. |
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| Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. |
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IJCAI : proceedings of the conference. |
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Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
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International journal of data science and analytics. |
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| EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction. |
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Nature biotechnology. |
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| Omicseq: a web-based search engine for exploring omics datasets. |
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Nucleic acids research. |
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| Optimizing Interactive Development of Data-Intensive Applications. |
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Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). |
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Biometrics. |
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| Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides? |
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Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association. |
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| Matrix Metalloproteinases in Myocardial Infarction and Heart Failure. |
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Progress in molecular biology and translational science. |
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| Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality. |
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Physical review. E. |
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2017 Mar; |
| SCnorm: robust normalization of single-cell RNA-seq data. |
Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, Christina |
Nature methods. |
28418000 |
2017 Jun; |
| Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis. |
Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, Purvesh |
Journal of the Pediatric Infectious Diseases Society. |
28419265 |
2017 Apr 13; |
| Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding. |
Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, David |
IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. |
28422683 |
2017 Apr 12; |
| Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. |
Roy, Sushmita; Sridharan, Rupa |
Genome research. |
28424352 |
2017 Jul; |
| Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database. |
Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita L |
JAMA oncology. |
28426842 |
2017 Aug 01; |
| Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium. |
Bearden, Carrie E; Thompson, Paul M |
Neuron. |
28426957 |
2017 Apr 19; |
| Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum. |
Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina Horta |
Bioorganic & medicinal chemistry letters. |
28434763 |
2017 Jun 01; |
| The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age. |
Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
28435933 |
2017 Apr; |
| IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation. |
Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry L |
Basic research in cardiology. |
28439731 |
2017 May; |
| Flexible Analog Search with Kernel PCA Embedded Molecule Vectors. |
Rensi, Stefano; Altman, Russ B |
Computational and structural biotechnology journal. |
28458783 |
2017; |
| Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group. |
Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O A |
Molecular psychiatry. |
28461699 |
2017 May 02; |
| Connectome imaging for mapping human brain pathways. |
Shi, Y; Toga, A W |
Molecular psychiatry. |
28461700 |
2017 Sep; |
| Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group. |
Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I B |
Translational psychiatry. |
28463239 |
2017 May 02; |
| Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. |
Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, Sylvane |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
28470180 |
2017 Dec; |
| Widespread Allelic Heterogeneity in Complex Traits. |
Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, Eleazar |
American journal of human genetics. |
28475861 |
2017 May 04; |
| Experimental Design on a Budget for Sparse Linear Models and Applications. |
Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, Vikas |
JMLR workshop and conference proceedings. |
28479945 |
2016 Jun; |
| Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. |
Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, Seth |
Bioinformatics (Oxford, England). |
28481970 |
2017 Sep 01; |
| Deep learning for healthcare: review, opportunities and challenges. |
Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel T |
Briefings in bioinformatics. |
28481991 |
2017 May 06; |
| Discovering and linking public omics data sets using the Omics Discovery Index. |
Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, Henning |
Nature biotechnology. |
28486464 |
2017 05 09; |
| Continuous representations of brain connectivity using spatial point processes. |
Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M |
Medical image analysis. |
28487128 |
2017 Oct; |
| Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. |
Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, Avi |
Journal of biomedical informatics. |
28501646 |
2017 07; |
| Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Biometrika. |
28502988 |
2015 Jun; |
| L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs. |
Neykov, Matey; Liu, Jun S; Cai, Tianxi |
Journal of machine learning research : JMLR. |
28503101 |
2016 May; |
| Heritability of Hippocampal Formation Sub-region Volumes. |
Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G M |
Journal of neurology and neuroscience. |
28503392 |
2016; |
| Diverging volumetric trajectories following pediatric traumatic brain injury. |
Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert F |
NeuroImage. Clinical. |
28507895 |
2017; |
| The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. |
Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew R |
Molecular & cellular proteomics : MCP. |
28515314 |
2017 Jul; |
| Using high-resolution variant frequencies to empower clinical genome interpretation. |
Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James S |
Genetics in medicine : official journal of the American College of Medical Genetics. |
28518168 |
2017 Oct; |
| MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. |
Bernstein, Matthew N; Doan, AnHai; Dewey, Colin N |
Bioinformatics (Oxford, England). |
28535296 |
2017 Sep 15; |
| Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. |
Wallace, Byron C; Noel-Storr, Anna; Marshall, Iain J; Cohen, Aaron M; Smalheiser, Neil R; Thomas, James |
Journal of the American Medical Informatics Association : JAMIA. |
28541493 |
2017 Nov 01; |
| Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium. |
Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S |
Psychological medicine. |
28545597 |
2018 Jan; |
| Statistical Methods for Latent Class Quantitative Trait Loci Mapping. |
Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, Christina |
Genetics. |
28550015 |
2017 07; |
| VISAGE: Interactive Visual Graph Querying. |
Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng |
AVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference). |
28553670 |
2016 Jun; |
| Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics. |
Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas A |
Aging cell. |
28556428 |
2017 Aug; |
| Structure-Leveraged Methods in Breast Cancer Risk Prediction. |
Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, Elizabeth |
Journal of machine learning research : JMLR. |
28559747 |
2016 Dec; |
| A review of active learning approaches to experimental design for uncovering biological networks. |
Sverchkov, Yuriy; Craven, Mark |
PLoS computational biology. |
28570593 |
2017 Jun; |
| Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change. |
Hamilton, William L; Leskovec, Jure; Jurafsky, Dan |
Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. |
28580459 |
2016 Nov; |
| Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group. |
Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke E |
Human brain mapping. |
28580697 |
2017 Sep; |
| QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity. |
Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina Horta |
European journal of medicinal chemistry. |
28582669 |
2017 May 10; |
| Dead simple OWL design patterns. |
Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, Christopher |
Journal of biomedical semantics. |
28583177 |
2017 Jun 05; |
| Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach. |
van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C A |
Translational psychiatry. |
28585928 |
2017 Jun 06; |
| Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls. |
van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, Barbara |
Journal of child psychology and psychiatry, and allied disciplines. |
28589541 |
2017 Aug; |
| NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. |
Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark A |
Journal of biomedical semantics. |
28592275 |
2017 Jun 07; |
| Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults. |
Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling C |
Brain imaging and behavior. |
28600739 |
2017 Jun 09; |
| The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans. |
Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, A |
Molecular psychiatry. |
28607459 |
2017 Jun 13; |
| Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia. |
Beaver, Jenna; Wilson, Kaci B; Schmitter-Edgecombe, Maureen |
Neuropsychological rehabilitation |
28617099 |
2019 Jun |
| ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis. |
Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, Jian |
BMC bioinformatics. |
28617224 |
2017 Jun 06; |
| Psychosocial Stress and Brain Function in Adolescent Psychopathology. |
Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
28618856 |
2017 08 01; |
| Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). |
Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier |
Journal of biomedical informatics. |
28625880 |
; |
| Big Data Analytics with Datalog Queries on Spark. |
Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, Carlo |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28626296 |
2016 Jun-Jul; |
| Temporally Factorized Network Modeling for Evolutionary Network Analysis. |
Yu, Wenchao; Aggarwal, Charu C; Wang, Wei |
Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. |
28626845 |
2017 Feb; |
| Structural complexity and molecular heterogeneity of a butterfly ejaculate reflect a complex history of selection. |
Meslin, Camille; Cherwin, Tamara S; Plakke, Melissa S; Hill, Jason; Small, Brandon S; Goetz, Breanna J; Wheat, Christopher W; Morehouse, Nathan I; Clark, Nathan L |
Proceedings of the National Academy of Sciences of the United States of America |
28630352 |
2017 Jul 03 |
| ClinVar data parsing. |
Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, Ben |
Wellcome open research. |
28630944 |
2017; |
| Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity. |
van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina A |
The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. |
28635543 |
2017 Mar 01; |
| Predicting structured metadata from unstructured metadata. |
Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier |
Database : the journal of biological databases and curation. |
28637268 |
; |
| UpSetR: an R package for the visualization of intersecting sets and their properties. |
Conway, Jake R; Lex, Alexander; Gehlenborg, Nils |
Bioinformatics (Oxford, England). |
28645171 |
2017 Sep 15; |
| Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening. |
Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott A |
Journal of chemical information and modeling. |
28654262 |
2017 Jul 24; |
| Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora. |
Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, Dan |
Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. |
28660257 |
2016 Nov; |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. |
McMurry, Julie A; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; Courtot, Mélanie; Deck, John; Dumontier, Michel; Fellows, Donal K; Gonzalez-Beltran, Alejandra; Gormanns, Philipp; Grethe, Jeffrey; Hastings, Janna; Hériché, Jean-Karim; Hermjakob, Henning; Ison, Jon C; Jimenez, Rafael C; Jupp, Simon; Kunze, John; Laibe, Camille; Le Novère, Nicolas; Malone, James; Martin, Maria Jesus; McEntyre, Johanna R; Morris, Chris; Muilu, Juha; Müller, Wolfgang; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sariyar, Murat; Snoep, Jacky L; Soiland-Reyes, Stian; Stanford, Natalie J; Swainston, Neil; Washington, Nicole; Williams, Alan R; Wimalaratne, Sarala M; Winfree, Lilly M; Wolstencroft, Katherine; Goble, Carole; Mungall, Christopher J; Haendel, Melissa A; Parkinson, Helen |
PLoS biology |
28662064 |
2017 Jun |
| PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. |
Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleto |
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. |
28662764 |
2017 06 08; |
| A Simple Approach to Shared Decision Making in Cancer Screening. |
Schrager, Sarina B; Phillips, Gina; Burnside, Elizabeth |
Family practice management. |
28671358 |
2017 May/Jun; |
| The significance of negative correlations in brain connectivity. |
Zhan, Liang; Jenkins, Lisanne M; Wolfson, Ouri E; GadElkarim, Johnson Jonaris; Nocito, Kevin; Thompson, Paul M; Ajilore, Olusola A; Chung, Moo K; Leow, Alex D |
The Journal of comparative neurology |
28675490 |
2017 Oct 15 |
| An exploration of crowdsourcing citation screening for systematic reviews. |
Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron C |
Research synthesis methods. |
28677322 |
2017 Jul 04; |
| Origins of lymphatic and distant metastases in human colorectal cancer. |
Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh K |
Science (New York, N.Y.). |
28684519 |
2017 07 07; |
| Large-scale physical activity data reveal worldwide activity inequality. |
Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, Jure |
Nature. |
28693034 |
2017 07 20; |
| Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. |
Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott L |
PloS one. |
28700630 |
2017; |
| A graph extension of the positional Burrows-Wheeler transform and its applications. |
Novak, Adam M; Garrison, Erik; Paten, Benedict |
Algorithms for molecular biology : AMB. |
28702075 |
2017; |
| Gramene Database: Navigating Plant Comparative Genomics Resources. |
Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, Pankaj |
Current plant biology. |
28713666 |
2016 Nov; |
| Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. |
Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
28720551 |
2017 Oct 01; |
| Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. |
Rensi, Stefano E; Altman, Russ B |
Journal of chemical information and modeling. |
28727421 |
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| Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards. |
Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, Jian |
Pharmaceuticals (Basel, Switzerland). |
28737679 |
2017 Jul 22; |
| Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics. |
King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, Timothy |
Contemporary clinical trials. |
28739541 |
2017 Oct; |
| Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities. |
Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David N |
Neuroinformatics. |
28748392 |
2017 Jul; |
| Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff. |
Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
28752014 |
2015 Aug; |
| Chalcone Derivatives: Promising Starting Points for Drug Design. |
Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno J |
Molecules (Basel, Switzerland). |
28757583 |
2017 Jul 25; |
| Genome-wide association analysis identifies common variants influencing infant brain volumes. |
Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C |
Translational psychiatry. |
28763065 |
2017 Aug 01; |
| Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth. |
Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan K |
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
28764867 |
2017 10; |
| Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia. |
Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L Elliot |
JAMA psychiatry. |
28768312 |
2017 Sep 01; |
| Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data. |
Shin, Sunyoung; Kele?, Sündüz |
Statistics in biosciences. |
28781711 |
2017 Jun; |
| Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories. |
Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert L |
JCO precision oncology. |
28782058 |
2017 Jul; |
| Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies. |
Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey W |
Proceedings of the National Academy of Sciences of the United States of America. |
28784769 |
2017 Sep 05; |
| PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. |
Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, Shuang |
BMC medical genomics. |
28786365 |
2017 Jul 26; |
| Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI. |
Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy B |
AJR. American journal of roentgenology. |
28792802 |
2017 Jun; |
| Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance. |
Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, Saurabh |
Genome biology. |
28800781 |
2017 Aug 11; |
| Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images. |
Bhattacharya, Abhishek; Young, Albert; Wong, Andrew; Stalling, Simone; Wei, Maria; Hadley, Dexter |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
28815132 |
2017; |
| D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. |
Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, Guoqian |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
28815140 |
2017; |
| SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. |
Rueda, Manuel; Torkamani, Ali |
BMC bioinformatics. |
28821228 |
2017 Aug 18; |
| Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach. |
Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H Hill |
Scientific reports. |
28821748 |
2017 Aug 18; |
| Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia. |
Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, Tamer |
Circulation. |
28827223 |
2017 Aug 22; |
| Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD. |
Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian F |
Journal of psychiatry & neuroscience : JPN. |
28832320 |
2017 Nov; |
| High-Definition Medicine. |
Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric J |
Cell. |
28841416 |
2017 Aug 24; |
| Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis. |
Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur W |
JAMA neurology. |
28846757 |
2017 Oct 01; |
| Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. |
Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew R |
Journal of proteome research. |
28849660 |
2017 Dec 01; |
| Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric W |
Journal of proteome research. |
28853897 |
2017 Dec 01; |
| A signal-based method for finding driver modules of breast cancer metastasis to the lung. |
Yan, Gaibo; Chen, Vicky; Lu, Xinghua; Lu, Songjian |
Scientific reports. |
28855549 |
2017 08 30; |
| Data-analysis strategies for image-based cell profiling. |
Caicedo, Juan C; Cooper, Sam; Heigwer, Florian; Warchal, Scott; Qiu, Peng; Molnar, Csaba; Vasilevich, Aliaksei S; Barry, Joseph D; Bansal, Harmanjit Singh; Kraus, Oren; Wawer, Mathias; Paavolainen, Lassi; Herrmann, Markus D; Rohban, Mohammad; Hung, Jane; Hennig, Holger; Concannon, John; Smith, Ian; Clemons, Paul A; Singh, Shantanu; Rees, Paul; Horvath, Peter; Linington, Roger G; Carpenter, Anne E |
Nature methods. |
28858338 |
2017 Aug 31; |
| Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports. |
Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, Paul |
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
28862395 |
2017 Sep 01; |
| Using information technology to improve surveillance of antimicrobial resistance in South East Asia. |
Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, Anuj |
BMJ (Clinical research ed.). |
28874344 |
2017 09 05; |
| Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control. |
Sadaghiani, Sepideh; Ng, Bernard; Altmann, Andre; Poline, Jean-Baptiste; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Gallinat, Jürgen; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Lemaitre, Hervé; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Napolioni, Valerio; Greicius, Michael |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
28877969 |
2017 10 04; |
| Modelling haplotypes with respect to reference cohort variation graphs. |
Rosen, Yohei; Eizenga, Jordan; Paten, Benedict |
Bioinformatics (Oxford, England). |
28881971 |
2017 Jul 15; |
| Predicting multicellular function through multi-layer tissue networks. |
Zitnik, Marinka; Leskovec, Jure |
Bioinformatics (Oxford, England). |
28881986 |
2017 Jul 15; |
| Unique transcriptomic response to sepsis is observed among patients of different age groups. |
Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James L |
PloS one. |
28886074 |
2017; |
| ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES. |
Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S C |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
28890755 |
2017 Apr; |
| Comments on ''Personalized dose finding using outcome weighted learning''. |
Fan, Jun; Yuan, Ming |
Journal of the American Statistical Association. |
28919653 |
2017; |
| Precision annotation of digital samples in NCBI's gene expression omnibus. |
Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul J |
Scientific data. |
28925997 |
2017 Sep 19; |
| Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing. |
DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry L |
JCI insight. |
28931761 |
2017 Sep 21; |
| Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance. |
Zhang, Wen; Shi, Jie; Yu, Jun; Zhan, Liang; Thompson, Paul M; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
28936280 |
2017; |
| Systematic integration of biomedical knowledge prioritizes drugs for repurposing. |
Himmelstein, Daniel Scott; Lizee, Antoine; Hessler, Christine; Brueggeman, Leo; Chen, Sabrina L; Hadley, Dexter; Green, Ari; Khankhanian, Pouya; Baranzini, Sergio E |
eLife. |
28936969 |
2017 Sep 22; |
| The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. |
Schwenk, Jochen M; Omenn, Gilbert S; Sun, Zhi; Campbell, David S; Baker, Mark S; Overall, Christopher M; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W |
Journal of proteome research. |
28938075 |
2017 Dec 01; |
| Creating a data resource: what will it take to build a medical information commons? |
Deverka, Patricia A; Majumder, Mary A; Villanueva, Angela G; Anderson, Margaret; Bakker, Annette C; Bardill, Jessica; Boerwinkle, Eric; Bubela, Tania; Evans, Barbara J; Garrison, Nanibaa' A; Gibbs, Richard A; Gentleman, Robert; Glazer, David; Goldstein, Melissa M; Greely, Hank; Harris, Crane; Knoppers, Bartha M; Koenig, Barbara A; Kohane, Isaac S; La Rosa, Salvatore; Mattison, John; O'Donnell, Christopher J; Rai, Arti K; Rehm, Heidi L; Rodriguez, Laura L; Shelton, Robert; Simoncelli, Tania; Terry, Sharon F; Watson, Michael S; Wilbanks, John; Cook-Deegan, Robert; McGuire, Amy L |
Genome medicine. |
28938910 |
2017 Sep 22; |
| Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline. |
Zhang, Jie; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Information processing in medical imaging : proceedings of the ... conference. |
28943731 |
2017 Jun; |
| Topographic Regularity for Tract Filtering in Brain Connectivity. |
Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit; Toga, Arthur W; Shi, Yonggang |
Information processing in medical imaging : proceedings of the ... conference. |
28943732 |
2017 Jun; |
| DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial. |
Wolf, Denise M; Yau, Christina; Sanil, Ashish; Glas, Annuska; Petricoin, Emanuel; Wulfkuhle, Julia; Severson, Tesa M; Linn, Sabine; Brown-Swigart, Lamorna; Hirst, Gillian; Buxton, Meredith; DeMichele, Angela; Hylton, Nola; Symmans, Fraser; Yee, Doug; Paoloni, Melissa; Esserman, Laura; Berry, Don; Rugo, Hope; Olopade, Olufunmilayo; van 't Veer, Laura |
NPJ breast cancer. |
28948212 |
2017; |
| Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management. |
Parameswaran, Aditya; Sarma, Akash Das; Venkataraman, Vipul |
Bulletin of the Technical Committee on Data Engineering. |
28951893 |
2016 Dec; |
| GraphSpace: stimulating interdisciplinary collaborations in network biology. |
Bharadwaj, Aditya; Singh, Divit P; Ritz, Anna; Tegge, Allison N; Poirel, Christopher L; Kraikivski, Pavel; Adames, Neil; Luther, Kurt; Kale, Shiv D; Peccoud, Jean; Tyson, John J; Murali, T M |
Bioinformatics (Oxford, England). |
28957495 |
2017 Oct 01; |
| Algorithmic Advances and Applications from RECOMB 2017. |
NULL |
Cell systems. |
28957652 |
2017 Sep 27; |
| EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING. |
Zhang, Jie; Fan, Yonghui; Li, Qingyang; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
28959379 |
2017 Apr; |
| Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development. |
Hinckson, Erica; Schneider, Margaret; Winter, Sandra J; Stone, Emily; Puhan, Milo; Stathi, Afroditi; Porter, Michelle M; Gardiner, Paul A; Dos Santos, Daniela Lopes; Wolff, Andrea; King, Abby C |
The international journal of behavioral nutrition and physical activity. |
28962580 |
2017 Sep 29; |
| Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity. |
Smuck, Matthew; Muaremi, Amir; Zheng, Patricia; Norden, Justin; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy |
The spine journal : official journal of the North American Spine Society. |
28962914 |
2018 Jan; |
| Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination. |
Zhang, Kun; Huang, Biwei; Zhang, Jiji; Glymour, Clark; Schölkopf, Bernhard |
IJCAI : proceedings of the conference. |
28966540 |
2017 Aug; |
| IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients. |
Choi, J; Ye, S; Eng, K H; Korthauer, K; Bradley, W H; Rader, J S; Kendziorski, C |
Statistics in biosciences. |
28966695 |
2017 Jun; |
| Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations. |
King, Joseph A; Frank, Guido K W; Thompson, Paul M; Ehrlich, Stefan |
Biological psychiatry. |
28967386 |
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| Applying family analyses to electronic health records to facilitate genetic research. |
Huang, Xiayuan; Elston, Robert C; Rosa, Guilherme J; Mayer, John; Ye, Zhan; Kitchner, Terrie; Brilliant, Murray H; Page, David; Hebbring, Scott J; Stegle, Oliver |
Bioinformatics (Oxford, England). |
28968884 |
2018 Feb 15; |
| Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma. |
Young, Jonathan D; Cai, Chunhui; Lu, Xinghua |
BMC bioinformatics. |
28984190 |
2017 Oct 03; |
| How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application. |
Shameli, Ali; Althoff, Tim; Saberi, Amin; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
28990011 |
2017 Apr; |
| Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis. |
Hejblum, Boris P; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Sparks, Jeffrey A; Sokolove, Jeremy; Cai, Tianxi; Liao, Katherine P |
Arthritis care & research. |
28992379 |
2017 Oct 09; |
| Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints. |
Glusman, Gustavo; Mauldin, Denise E; Hood, Leroy E; Robinson, Max |
Frontiers in genetics. |
29018478 |
2017; |
| Co-expression networks reveal the tissue-specific regulation of transcription and splicing. |
Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; GTEx Consortium; Engelhardt, Barbara E; Battle, Alexis |
Genome research. |
29021288 |
2017 Nov; |
| Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. |
Yang, Fan; Wang, Jiebiao; GTEx Consortium; Pierce, Brandon L; Chen, Lin S |
Genome research. |
29021290 |
2017 Nov; |
| Dynamic landscape and regulation of RNA editing in mammals. |
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Nature. |
29022589 |
2017 Oct 11; |
| Genetic effects on gene expression across human tissues. |
GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lead analysts:; Laboratory, Data Analysis &Coordinating Center (LDACC):; NIH program management:; Biospecimen collection:; Pathology:; eQTL manuscript working group:; Battle, Alexis; Brown, Christopher D; Engelhardt, Barbara E; Montgomery, Stephen B |
Nature. |
29022597 |
2017 Oct 11; |
| Landscape of X chromosome inactivation across human tissues. |
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Nature. |
29022598 |
2017 Oct 11; |
| A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. |
Campbell, Walter S; Karlsson, Daniel; Vreeman, Daniel J; Lazenby, Audrey J; Talmon, Geoffrey A; Campbell, James R |
Journal of the American Medical Informatics Association : JAMIA. |
29024958 |
2017 Sep 13; |
| TeachEnG: a Teaching Engine for Genomics. |
Kim, Minji; Kim, Yeonsung; Qian, Lei; Song, Jun S |
Bioinformatics (Oxford, England). |
29028264 |
2017 Oct 15; |
| Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. |
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eLife. |
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2017 Oct 16; |
| Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. |
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Bioinformatics (Oxford, England). |
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| County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year. |
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Molecular psychiatry. |
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| Using the Telephone Interview for Cognitive Status and Telephone Montreal Cognitive Assessment for Evaluating Vascular Cognitive Impairment: Promising Call or Put on Hold? |
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Stroke. |
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| Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability. |
Reijnders, M R F; Kousi, M; van Woerden, G M; Klein, M; Bralten, J; Mancini, G M S; van Essen, T; Proietti-Onori, M; Smeets, E E J; van Gastel, M; Stegmann, A P A; Stevens, S J C; Lelieveld, S H; Gilissen, C; Pfundt, R; Tan, P L; Kleefstra, T; Franke, B; Elgersma, Y; Katsanis, N; Brunner, H G |
Nature communications. |
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| Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study. |
Wang, Liewei; Ingle, James; Weinshilboum, Richard |
Clinical pharmacology and therapeutics. |
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2018 Feb; |
| Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach. |
Wang, Shulei; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming |
IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. |
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2018 Feb; |
| PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals. |
Wenzel, Sally E; Tyurina, Yulia Y; Zhao, Jinming; St Croix, Claudette M; Dar, Haider H; Mao, Gaowei; Tyurin, Vladimir A; Anthonymuthu, Tamil S; Kapralov, Alexandr A; Amoscato, Andrew A; Mikulska-Ruminska, Karolina; Shrivastava, Indira H; Kenny, Elizabeth M; Yang, Qin; Rosenbaum, Joel C; Sparvero, Louis J; Emlet, David R; Wen, Xiaoyan; Minami, Yoshinori; Qu, Feng; Watkins, Simon C; Holman, Theodore R; VanDemark, Andrew P; Kellum, John A; Bahar, Ivet; Bay?r, Hülya; Kagan, Valerian E |
Cell. |
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| Translational MRI Volumetry with NeuroQuant: Effects of Version and Normative Data on Relationships with Memory Performance in Healthy Older Adults and Patients with Mild Cognitive Impairment. |
Stelmokas, Julija; Yassay, Lance; Giordani, Bruno; Dodge, Hiroko H; Dinov, Ivo D; Bhaumik, Arijit; Sathian, K; Hampstead, Benjamin M |
Journal of Alzheimer's disease : JAD. |
29060939 |
2017; |
| Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care. |
Murphy, S; Castro, V; Mandl, K |
Yearbook of medical informatics. |
29063545 |
2017 Aug; |
| An Assessment of Imaging Informatics for Precision Medicine in Cancer. |
Chennubhotla, C; Clarke, L P; Fedorov, A; Foran, D; Harris, G; Helton, E; Nordstrom, R; Prior, F; Rubin, D; Saltz, J H; Shalley, E; Sharma, A |
Yearbook of medical informatics. |
29063549 |
2017 Aug; |
| Imagining the ''open'' university: Sharing scholarship to improve research and education. |
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PLoS biology. |
29065148 |
2017 Oct; |
| WormBase 2017: molting into a new stage. |
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Nucleic acids research. |
29069413 |
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| To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System. |
Gaston, Jacqueline; Cooper, Seth |
Proceedings of the SIGCHI conference on human factors in computing systems . CHI Conference. |
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2017; |
| A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0). |
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GigaScience. |
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| Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images. |
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Cancer research. |
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2017 Nov 01; |
| Aggregating and Predicting Sequence Labels from Crowd Annotations. |
Nguyen, An T; Wallace, Byron C; Li, Junyi Jessy; Nenkova, Ani; Lease, Matthew |
Proceedings of the conference. Association for Computational Linguistics. Meeting. |
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2017; |
| Pharmacogenomics: Precision Medicine and Drug Response. |
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Mayo Clinic proceedings. |
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2017 Nov; |
| Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. |
O'Banion, Colin P; Priestman, Melanie A; Hughes, Robert M; Herring, Laura E; Capuzzi, Stephen J; Lawrence, David S |
Cell chemical biology. |
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| Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction. |
Ma, Yonggang; Mouton, Alan J; Lindsey, Merry L |
Translational research : the journal of laboratory and clinical medicine. |
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2018 01; |
| Privacy-preserving techniques of genomic data-a survey. |
Aziz, Md Momin Al; Sadat, Md Nazmus; Alhadidi, Dima; Wang, Shuang; Jiang, Xiaoqian; Brown, Cheryl L; Mohammed, Noman |
Briefings in bioinformatics. |
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2019 05 21; |
| An empirical Bayes test for allelic-imbalance detection in ChIP-seq. |
Zhang, Qi; Keles, Sündüz |
Biostatistics (Oxford, England). |
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| Enabling phenotypic big data with PheNorm. |
Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA. |
29126253 |
2018 01 01; |
| Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. |
Ding, Michael Q; Chen, Lujia; Cooper, Gregory F; Young, Jonathan D; Lu, Xinghua |
Molecular cancer research : MCR. |
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2017 Nov 13; |
| Altered connectivity patterns among resting state networks in patients with ischemic white matter lesions. |
Ding, Ju-Rong; Ding, Xin; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Wang, Qingsong; Thompson, Paul |
Brain imaging and behavior. |
29134612 |
2018 Oct; |
| Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. |
van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Busatto, Geraldo F; Calderoni, Sara; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jackie; Freitag, Christine M; Gallagher, Louise; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; Lerch, Jason; Luna, Beatriz; Martinho, Mauricio Moller; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot; Thompson, Paul M; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Buitelaar, Jan K |
The American journal of psychiatry. |
29145754 |
2018 04 01; |
| Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure. |
Chen, Chi-Hua; Wang, Yunpeng; Lo, Min-Tzu; Schork, Andrew; Fan, Chun-Chieh; Holland, Dominic; Kauppi, Karolina; Smeland, Olav B; Djurovic, Srdjan; Sanyal, Nilotpal; Hibar, Derrek P; Thompson, Paul M; Thompson, Wesley K; Andreassen, Ole A; Dale, Anders M |
Scientific reports. |
29147026 |
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| Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury. |
Dennis, Emily L; Rashid, Faisal; Villalon-Reina, Julio; Prasad, Gautam; Faskowitz, Joshua; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M |
Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries : second International Workshop, BrainLes 2016, with the challenges on BRATS, ISLES and mTOP 2016, held in conjunction with MICCAI 2016, Athens, Greece, Octob.... |
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| A Continuous Model of Cortical Connectivity. |
Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M |
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. |
29147688 |
2016 Oct; |
| Diffusion MRI in pediatric brain injury. |
Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery. |
29149383 |
2017 Oct; |
| A Visual Analytics Approach to Understanding Care Process Variation and Conformance. |
Basole, Rahul C; Park, Hyunwoo; Gupta, Mayank; Braunstein, Mark L; Chau, Duen Horng; Thompson, Michael |
Proceedings of the 2015 Workshop on Visual Analytics in Healthcare. |
29177250 |
2015 Oct; |
| A volumetric conformal mapping approach for clustering white matter fibers in the brain. |
Gupta, Vikash; Prasad, Gautam; Thompson, Paul |
Spectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece). |
29177252 |
2016 Oct; |
| Neuroimaging genomics in psychiatry-a translational approach. |
Mufford, Mary S; Stein, Dan J; Dalvie, Shareefa; Groenewold, Nynke A; Thompson, Paul M; Jahanshad, Neda |
Genome medicine. |
29179742 |
2017 Nov 27; |
| Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies. |
Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle N |
Human brain mapping. |
29181875 |
2018 Feb; |
| Reactome diagram viewer: data structures and strategies to boost performance. |
Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Marin-Garcia, Pablo; Ping, Peipei; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
Bioinformatics (Oxford, England). |
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| Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood. |
Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta K |
NeuroImage. |
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| Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents. |
Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortium |
Journal of child psychology and psychiatry, and allied disciplines. |
29197086 |
2017 Dec 02; |
| The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. |
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Cell systems. |
29199020 |
2017 Nov 24; |
| MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS. |
Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201279 |
2017; |
| A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI. |
Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201280 |
2017; |
| Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. |
Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201281 |
2017; |
| THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS. |
Fleishman, Greg M; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201282 |
2017; |
| A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. |
Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201283 |
2017; |
| APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE. |
Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201284 |
2017; |
| Estimating bounds on causal effects in high-dimensional and possibly confounded systems. |
Malinsky, Daniel; Spirtes, Peter |
International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. |
29203954 |
2017 Sep; |
| Pharmacoepidemiology in the era of real-world evidence. |
Toh, Sengwee |
Current epidemiology reports. |
29204331 |
2017 Dec; |
| Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. |
Li, Xiaojuan; Young, Jessica G; Toh, Sengwee |
Current epidemiology reports. |
29204332 |
2017 Dec; |
| Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. |
Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith C |
Current epidemiology reports. |
29204333 |
2017 Dec; |
| Reproducibility, sharing and progress in nanomaterial databases. |
Tropsha, Alexander; Mills, Karmann C; Hickey, Anthony J |
Nature nanotechnology |
29209007 |
2017 12 06 |
| KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase. |
Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, Zhimin |
Nature. |
29211711 |
2017 12 14; |
| Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia. |
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Biological psychiatry. |
29217296 |
2018 Feb 01; |
| Large-scale analysis of disease pathways in the human interactome. |
Agrawal, Monica; Zitnik, Marinka; Leskovec, Jure |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218874 |
2018; |
| Democratizing data science through data science training. |
Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José Luis |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218890 |
2018; |
| Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. |
Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218892 |
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| VisAGE: Integrating external knowledge into electronic medical record visualization. |
Huang, Edward W; Wang, Sheng; Zhai, ChengXiang |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218916 |
2018; |
| Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure. |
P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, Peggy |
JMIR medical informatics. |
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2017 Dec 08; |
| Action Centered Contextual Bandits. |
Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, Susan |
Advances in neural information processing systems. |
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2017 Dec; |
| An Optimal Transportation based Univariate Neuroimaging Index. |
Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin |
Proceedings. IEEE International Conference on Computer Vision. |
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2017; |
| Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models. |
Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, Maxwell |
Structural equation modeling : a multidisciplinary journal. |
29230085 |
2017; |
| Embedding Learning with Events in Heterogeneous Information Networks. |
Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, Jiawei |
IEEE transactions on knowledge and data engineering. |
29242698 |
2017 Nov; |
| Data-Driven Mammography Screening Practices-Reply. |
Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth S |
JAMA oncology. |
29242927 |
2017 Dec 14; |
| Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. |
Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C Y |
Journal of biomechanical engineering. |
29247253 |
2018 Feb 01; |
| Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes. |
Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry L |
Matrix biology : journal of the International Society for Matrix Biology. |
29247693 |
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| Complete hazard ranking to analyze right-censored data: An ALS survival study. |
Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials Consortium |
PLoS computational biology. |
29253881 |
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| Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. |
Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric W |
Genome medicine. |
29254494 |
2017 Dec 18; |
| Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories. |
Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, Yalin |
Proceedings of SPIE--the International Society for Optical Engineering. |
29263566 |
2017 Oct; |
| A community effort to protect genomic data sharing, collaboration and outsourcing. |
Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, Lucila |
NPJ genomic medicine. |
29263842 |
2017; |
| Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. |
Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, Paul |
Bioinformatics (Oxford, England). |
29267850 |
2017 Dec 18; |
| SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis. |
Magis, Andrew T; Funk, Cory C; Price, Nathan D |
IEEE life sciences letters. |
29270443 |
2015 Aug; |
| MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome. |
Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance P |
Genome research. |
29273626 |
2018 Feb; |
| Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology. |
O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, Robert |
NeuroImage. |
29274748 |
2018 04 01; |
| Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K). |
Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, Dave |
IEEE pervasive computing. |
29276451 |
2017 Apr-Jun; |
| Neural response to working memory demand predicts neurocognitive deficits in HIV. |
Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-Z |
Journal of neurovirology. |
29280107 |
2018 Jun; |
| Proteomic analysis of the cardiac extracellular matrix: clinical research applications. |
Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine Y |
Expert review of proteomics. |
29285949 |
2018 Feb; |
| Investigating the differential contributions of sex and brain size to gray matter asymmetry. |
Kurth, Florian; Thompson, Paul M; Luders, Eileen |
Cortex; a journal devoted to the study of the nervous system and behavior. |
29287244 |
2018 Feb; |
| Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. |
Amith, Muhammad; Manion, Frank J; Harris, Marcelline R; Zhang, Yaoyun; Xu, Hua; Tao, Cui |
Studies in health technology and informatics. |
29295217 |
2017; |
| Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications. |
Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, Guoqian |
Studies in health technology and informatics. |
29295223 |
2017; |
| A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR. |
Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold R |
Studies in health technology and informatics. |
29295227 |
2017; |
| Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings. |
Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold R |
Studies in health technology and informatics. |
29295408 |
2017; |
| Linking temporal medical records using non-protected health information data. |
Bonomi, Luca; Jiang, Xiaoqian |
Statistical methods in medical research. |
29298592 |
2017 Jan 01; |
| Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed. |
Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, Alexander |
Journal of chemical information and modeling. |
29300482 |
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| Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. |
Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, Peter |
Circulation research. |
29301847 |
2018 Jan 05; |
| Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease. |
Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas |
Advances in neural information processing systems. |
29308004 |
2016; |
| Interactive Exploration on Large Genomic Datasets. |
Tu, Eric |
EECS technical report series. |
29308454 |
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| Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide. |
Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron C |
Research synthesis methods. |
29314757 |
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| Gut microbiome populations are associated with structure-specific changes in white matter architecture. |
Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul J |
Translational psychiatry. |
29317592 |
2018 Jan 10; |
| Integrated omics dissection of proteome dynamics during cardiac remodeling. |
Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, Peipei |
Nature communications. |
29317621 |
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| A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. |
Rappoport, Nadav; Toung, Jonathan; Hadley, Dexter; Wong, Ronald J; Fujioka, Kazumichi; Reuter, Jason; Abbott, Charles W; Oh, Sam; Hu, Donglei; Eng, Celeste; Huntsman, Scott; Bodian, Dale L; Niederhuber, John E; Hong, Xiumei; Zhang, Ge; Sikora-Wohfeld, Weronika; Gignoux, Christopher R; Wang, Hui; Oehlert, John; Jelliffe-Pawlowski, Laura L; Gould, Jeffrey B; Darmstadt, Gary L; Wang, Xiaobin; Bustamante, Carlos D; Snyder, Michael P; Ziv, Elad; Patsopoulos, Nikolaos A; Muglia, Louis J; Burchard, Esteban; Shaw, Gary M; O'Brodovich, Hugh M; Stevenson, David K; Butte, Atul J; Sirota, Marina |
Scientific reports. |
29317701 |
2018 01 09; |
| Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials. |
Luers, Brook; Klasnja, Predrag; Murphy, Susan |
Prevention science : the official journal of the Society for Prevention Research. |
29318443 |
2018 Jan 09; |
| Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups. |
Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Proteomics. |
29319931 |
2018 Feb; |
| A bibliometric review of drug repurposing. |
Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, Alexander |
Drug discovery today. |
29330123 |
2018 Mar; |
| Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices. |
Dadkhahi, Hamid; Marlin, Benjamin M |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29333328 |
2017 Aug; |
| Robust Dynamic Risk Prediction with Longitudinal Studies. |
Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, Tianxi |
Statistical theory and related fields. |
29335682 |
2017; |
| MIRO: guidelines for minimum information for the reporting of an ontology. |
Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, Robert |
Journal of biomedical semantics. |
29347969 |
2018 Jan 18; |
| Guidelines for experimental models of myocardial ischemia and infarction. |
Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; Przyklenk |
American journal of physiology. Heart and circulatory physiology. |
29351451 |
2018 Apr 01; |
| Guidelines for measuring cardiac physiology in mice. |
Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, Marielle |
American journal of physiology. Heart and circulatory physiology. |
29351456 |
2018 Apr 01; |
| Guidelines for authors and reviewers on antibody use in physiology studies. |
Brooks, Heddwen L; Lindsey, Merry L |
American journal of physiology. Heart and circulatory physiology. |
29351459 |
2018 Apr 01; |
| Are minor alleles more likely to be risk alleles? |
Kido, Takashi; Sikora-Wohlfeld, Weronika; Kawashima, Minae; Kikuchi, Shinichi; Kamatani, Naoyuki; Patwardhan, Anil; Chen, Richard; Sirota, Marina; Kodama, Keiichi; Hadley, Dexter; Butte, Atul J |
BMC medical genomics. |
29351777 |
2018 01 19; |
| Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084. |
Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun S |
Cancer research. |
29351903 |
2018 Jan 19; |
| Community Identity and User Engagement in a Multi-Community Landscape. |
Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure |
Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. |
29354325 |
2017 May; |
| Loyalty in Online Communities. |
Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure |
Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. |
29354326 |
2017 May; |
| Lingual Gyrus Surface Area Is Associated with Anxiety-Depression Severity in Young Adults: A Genetic Clustering Approach. |
Couvy-Duchesne, Baptiste; Strike, Lachlan T; de Zubicaray, Greig I; McMahon, Katie L; Thompson, Paul M; Hickie, Ian B; Martin, Nicholas G; Wright, Margaret J |
eNeuro. |
29354681 |
2018 Jan-Feb; |
| ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation. |
Hohman, Fred; Hodas, Nathan; Chau, Duen Horng |
Extended abstracts on Human factors in computing systems. CHI Conference. |
29354810 |
2017 May; |
| mHealth Visual Discovery Dashboard. |
Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen Horng |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29354812 |
2017 Sep; |
| Co-activation patterns in resting-state fMRI signals. |
Liu, Xiao; Zhang, Nanyin; Chang, Catie; Duyn, Jeff H |
NeuroImage. |
29355767 |
2018 10 15; |
| e wrapper: Operationalizing engagement strategies in mHealth. |
Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, Inbal |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29362728 |
2017 Sep; |
| Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study. |
Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay M |
Brain : a journal of neurology. |
29365066 |
2018 Feb 01; |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise. |
Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu |
Journal of the American College of Radiology : JACR. |
29366598 |
2018 03; |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation. |
Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu |
Journal of the American College of Radiology : JACR. |
29366600 |
2018 03; |
| Learning to Compose Domain-Specific Transformations for Data Augmentation. |
Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, Christopher |
Advances in neural information processing systems. |
29375240 |
2017 Dec; |
| Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age. |
Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne S |
MDM policy & practice. |
29376135 |
2017 Jul; |
| Cognitive genomics: Searching for the genetic roots of neuropsychological functioning. |
Bearden, Carrie E; Glahn, David C |
Neuropsychology. |
29376674 |
2017 Nov; |
| Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group. |
Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Calvo, Rosa |
The American journal of psychiatry. |
29377733 |
2018 05 01; |
| Reactome graph database: Efficient access to complex pathway data. |
Fabregat, Antonio; Korninger, Florian; Viteri, Guilherme; Sidiropoulos, Konstantinos; Marin-Garcia, Pablo; Ping, Peipei; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
PLoS computational biology. |
29377902 |
2018 01; |
| Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans. |
Zhang, Shanshan; Wang, Jingxiao; Wang, Haichuan; Fan, Lingling; Fan, Biao; Zeng, Billy; Tao, Junyan; Li, Xiaolei; Che, Li; Cigliano, Antonio; Ribback, Silvia; Dombrowski, Frank; Chen, Bin; Cong, Wenming; Wei, Lixin; Calvisi, Diego F; Chen, Xin |
The American journal of pathology. |
29378174 |
2018 04; |
| Interleukins and their signaling pathways in the Reactome biological pathway database. |
Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
The Journal of allergy and clinical immunology. |
29378288 |
2018 Apr; |
| Germline contamination and leakage in whole genome somatic single nucleotide variant detection. |
Sendorek, Dorota H; Caloian, Cristian; Ellrott, Kyle; Bare, J Christopher; Yamaguchi, Takafumi N; Ewing, Adam D; Houlahan, Kathleen E; Norman, Thea C; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C |
BMC bioinformatics |
29385983 |
2018 01 31 |
| The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. |
Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan Antonio |
Genome biology. |
29386051 |
2018 01 31; |
| Statistical tests and identifiability conditions for pooling and analyzing multisite datasets. |
Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging Initiative |
Proceedings of the National Academy of Sciences of the United States of America. |
29386387 |
2018 Feb 13; |
| Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Statistica Sinica. |
29386856 |
2018 Jan; |
| Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder. |
Ahmed, Ahmed T; Weinshilboum, Richard; Frye, Mark A |
Clinical pharmacology and therapeutics. |
29388201 |
2018 May; |
| Inferring Generative Model Structure with Static Analysis. |
Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, Christopher |
Advances in neural information processing systems. |
29391769 |
2017 Dec; |
| Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent. |
De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, Kunle |
Proceedings. International Symposium on Computer Architecture. |
29391770 |
2017 Jun; |
| Gaussian Quadrature for Kernel Features. |
Dao, Tri; De Sa, Christopher; Ré, Christopher |
Advances in neural information processing systems. |
29398882 |
2017 Dec; |
| Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions. |
Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, Jure |
CSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work. |
29399664 |
2017 Feb-Mar; |
| The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses. |
Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, Beatrijs |
Frontiers in neuroscience. |
29403344 |
2017; |
| Neuroanatomical morphometric characterization of sex differences in youth using statistical learning. |
Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi A |
NeuroImage. |
29414494 |
2018 May 15; |
| The Incremental Multiresolution Matrix Factorization Algorithm. |
Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29416293 |
2017 Jul; |
| Online Graph Completion: Multivariate Signal Recovery in Computer Vision. |
Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29416294 |
2017 Jul; |
| iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass. |
Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, Jeremy |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
29417956 |
2017 Jun; |
| Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis. |
Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis V |
Proceedings. International Conference on Data Engineering. |
29422764 |
2017 Apr; |
| Systematic identification of correlates of HIV infection: an X-wide association study. |
Patel, Chirag J; Bhattacharya, Jay; Ioannidis, John P A; Bendavid, Eran |
AIDS (London, England). |
29424772 |
2018 04 24; |
| Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging. |
Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29430166 |
2017 Jul; |
| Nanopore sequencing and assembly of a human genome with ultra-long reads. |
Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew |
Nature biotechnology. |
29431738 |
2018 Jan 29; |
| Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. |
Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia J |
Oncotarget. |
29435139 |
2018 Jan 12; |
| A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. |
Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos G |
Frontiers in immunology. |
29441070 |
2018; |
| Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. |
Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane J |
IEEE transactions on knowledge and data engineering. |
29456436 |
2017 Dec 01; |
| Superbubbles, Ultrabubbles, and Cacti. |
Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, Glenn |
Journal of computational biology : a journal of computational molecular cell biology. |
29461862 |
2018 Feb 20; |
| Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities. |
Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, Cui |
Journal of biomedical informatics. |
29462669 |
2018 Feb 17; |
| Comment. |
Reiss, Philip T; Goldsmith, Jeff |
Journal of the American Statistical Association. |
29479124 |
2017; |
| Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. |
Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, Avi |
Scientific data. |
29485625 |
2018 Feb 27; |
| Exploring applications of crowdsourcing to cryo-EM. |
Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew I |
Journal of structural biology. |
29486249 |
2018 Jul; |
| Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. |
Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. |
29488436 |
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| Survival models and health sequences. |
Dempsey, Walter; McCullagh, Peter |
Lifetime data analysis. |
29502184 |
2018 Mar 03; |
| From Pressure to Path: Barometer-based Vehicle Tracking. |
Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, Mani |
BuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015.... |
29503981 |
2015 Nov; |
| SARA: A Mobile App to Engage Users in Health Data Collection. |
Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29503985 |
2017 Sep; |
| Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist. |
Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory D |
DigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.). |
29505038 |
2017 Jul; |
| Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. |
Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, Noman |
JMIR medical informatics. |
29506966 |
2018 Mar 05; |
| Some methods for heterogeneous treatment effect estimation in high dimensions. |
Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, Robert |
Statistics in medicine. |
29508417 |
2018 May 20; |
| Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics. |
Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging Initiative |
Proceedings of the National Academy of Sciences of the United States of America. |
29511103 |
2018 Mar 20; |
| RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes. |
Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren A |
Pharmacology research & perspectives. |
29511567 |
2018 04; |
| Chronodes: Interactive Multifocus Exploration of Event Sequences. |
Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen Horng |
ACM transactions on interactive intelligent systems. |
29515937 |
2018 Feb; |
| Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints. |
Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, Gregory |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
29520396 |
2017 Sep; |
| A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing. |
Thomaz, Edison; Essa, Irfan; Abowd, Gregory D |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29520397 |
2015 Sep; |
| Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. |
Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, Purvesh |
Critical care medicine. |
29537985 |
2018 Mar 13; |
| Anytime Exploration for Multi-armed Bandits using Confidence Information. |
Jun, Kwang-Sung; Nowak, Robert |
JMLR workshop and conference proceedings. |
29541329 |
2016 Jun; |
| Adding Reg3? to the acute coronary syndrome prognostic marker list. |
Lindsey, Merry L; Mouton, Alan J; Ma, Yonggang |
International journal of cardiology. |
29544938 |
2018 05 01; |
| Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. |
Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
29550459 |
2018 Feb 03; |
| Developing Optimized Adaptive Interventions in Education. |
Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, Inbal |
Journal of research on educational effectiveness. |
29552270 |
2018; |
| Predicting Daily Activities From Egocentric Images Using Deep Learning. |
Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, Irfan |
Proceedings. International Symposium on Wearable Computers. |
29553145 |
2015 Aug; |
| Linear assembly of a human centromere on the Y chromosome. |
Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen H |
Nature biotechnology. |
29553574 |
2018 Mar 19; |
| Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. |
Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, Jens |
Assessment. |
29557190 |
2019 06; |
| PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets. |
Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan Pablo |
Journal of proteome research. |
29558135 |
2018 04 06; |
| QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. |
Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina H |
Frontiers in pharmacology. |
29559909 |
2018; |
| Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. |
Thybert, David; Roller, Maša; Navarro, Fábio C P; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janoušek, Václav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C; Laukaitis, Christina M; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M; Odom, Duncan T; Flicek, Paul |
Genome research |
29563166 |
2018 Apr |
| Biomedical informatics and machine learning for clinical genomics. |
Diao, James A; Kohane, Isaac S; Manrai, Arjun K |
Human molecular genetics. |
29566172 |
2018 May 01; |
| Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. |
Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortium |
Developmental cognitive neuroscience. |
29567584 |
2018 04; |
| Genetic Drivers of Pancreatic Islet Function. |
Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; Att |
Genetics. |
29567659 |
2018 05; |
| Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. |
Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, Francesca |
Biometrics. |
29569228 |
2018 09; |
| Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. |
Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research Network |
Cell systems. |
29596782 |
2018 Mar 28; |
| SnapVX: A Network-Based Convex Optimization Solver. |
Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, Jure |
Journal of machine learning research : JMLR. |
29599649 |
2017; |
| Optimizing Digital Integrated Care via Micro-Randomized Trials. |
Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, Susan |
Clinical pharmacology and therapeutics. |
29604043 |
2018 Mar 31; |
| Physical activity is associated with changes in knee cartilage microstructure. |
Halilaj, E; Hastie, T J; Gold, G E; Delp, S L |
Osteoarthritis and cartilage. |
29605382 |
2018 Jun; |
| Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F |
Knowledge and information systems. |
29606784 |
2018 Jan; |
| Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. |
Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane J |
Telemedicine journal and e-health : the official journal of the American Telemedicine Association. |
29608421 |
2018 Apr 02; |
| Structural dynamics is a determinant of the functional significance of missense variants. |
Ponzoni, Luca; Bahar, Ivet |
Proceedings of the National Academy of Sciences of the United States of America. |
29610305 |
2018 Apr 17; |
| Presurgical localization and spatial shift of resting state networks in patients with brain metastases. |
Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul M |
Brain imaging and behavior. |
29611075 |
2018 Apr 02; |
| Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes. |
Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-Michel |
PloS one. |
29617401 |
2018; |
| Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD. |
Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN) |
Gut. |
29618496 |
2019 04; |
| Opportunities and obstacles for deep learning in biology and medicine. |
Ching, Travers; Himmelstein, Daniel S; Beaulieu-Jones, Brett K; Kalinin, Alexandr A; Do, Brian T; Way, Gregory P; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M; Xie, Wei; Rosen, Gail L; Lengerich, Benjamin J; Israeli, Johnny; L |
Journal of the Royal Society, Interface. |
29618526 |
2018 Apr; |
| Content Is King: Databases Preserve the Collective Information of Science. |
Yates 3rd, John R |
Journal of biomolecular techniques : JBT. |
29618955 |
2018 Apr; |
| Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. |
Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard M |
Biochemical pharmacology. |
29621538 |
2018 Jun; |
| Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. |
Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Stroke. |
29622625 |
2018 May; |
| Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. |
Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, Alexander |
Journal of medicinal chemistry. |
29624387 |
2018 04 26; |
| Using Smart City Technology to Make Healthcare Smarter. |
Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, Roschelle |
Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. |
29628528 |
2018 Apr; |
| RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. |
Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani B |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
29629431 |
2017 Jun; |
| Emu: Engagement Modeling for User Studies. |
Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, Mani |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29629432 |
2017 Sep; |
| CIDER: Enhancing the Performance of Computational Eyeglasses. |
Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak |
Proceedings. Eye Tracking Research & Applications Symposium. |
29629433 |
2016 Mar; |
| SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. |
Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo D |
Proceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). |
29630069 |
2017 Apr; |
| Massive mining of publicly available RNA-seq data from human and mouse. |
Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, Avi |
Nature communications. |
29636450 |
; |
| Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. |
Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert F |
Journal of neurotrauma. |
29649959 |
2018 07 15; |
| Effects of green tea on miRNA and microbiome of oral epithelium. |
Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel L |
Scientific reports. |
29651001 |
2018 Apr 12; |
| Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments. |
Canver, Matthew C; Haeussler, Maximilian; Bauer, Daniel E; Orkin, Stuart H; Sanjana, Neville E; Shalem, Ophir; Yuan, Guo-Cheng; Zhang, Feng; Concordet, Jean-Paul; Pinello, Luca |
Nature protocols |
29651054 |
2018 May |
| Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. |
D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh |
Human brain mapping. |
29656430 |
2018 Apr 15; |
| Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. |
Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, Xiaoqian |
JMIR medical informatics. |
29666041 |
2018 Apr 17; |
| SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures. |
Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, Mani |
IoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.). |
29683151 |
2017 Apr; |
| Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. |
Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, Pierre |
Journal of computer assisted learning. |
29686446 |
2018 Apr; |
| FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. |
Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, Bjoern |
Database : the journal of biological databases and curation. |
29688354 |
2018 01 01; |
| Micropublication: incentivizing community curation and placing unpublished data into the public domain. |
Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W |
Database : the journal of biological databases and curation. |
29688367 |
2018 01 01; |
| Testing associations between cannabis use and subcortical volumes in two large population-based samples. |
Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret J |
Addiction (Abingdon, England). |
29691937 |
2018 Apr 24; |
| Deep learning in pharmacogenomics: from gene regulation to patient stratification. |
Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian D |
Pharmacogenomics. |
29697304 |
2018 05; |
| Personal Omics for Precision Health. |
Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael P |
Circulation research. |
29700064 |
2018 04 27; |
| Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. |
NULL |
Circulation research. |
29700073 |
2018 Apr 27; |
| A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. |
NULL |
Scientific reports. |
29700343 |
2018 Apr 26; |
| Quantifying predictive capability of electronic health records for the most harmful breast cancer. |
Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth S |
Proceedings of SPIE--the International Society for Optical Engineering. |
29706685 |
2018 Feb; |
| Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. |
Agniel, Denis; Kohane, Isaac S; Weber, Griffin M |
BMJ (Clinical research ed.). |
29712648 |
2018 04 30; |
| Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. |
Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William W |
Frontiers in neuroinformatics. |
29713272 |
2018; |
| Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. |
Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, Ivet |
Philosophical transactions of the Royal Society of London. Series B, Biological sciences. |
29735731 |
2018 06 19; |
| Uniform resolution of compact identifiers for biomedical data. |
Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, Tim |
Scientific data. |
29737976 |
2018 05 08; |
| Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. |
Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo D |
Scientific reports. |
29740058 |
2018 05 08; |
| A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. |
Zhao, Yongan; Wang, Xiaofeng; Tang, Haixu |
Journal of computational biology : a journal of computational molecular cell biology. |
29741956 |
2018 06; |
| Diverse reprogramming codes for neuronal identity. |
Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K |
Nature. |
29743677 |
2018 05; |
| Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. |
Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
Human brain mapping. |
29749094 |
2018 May 10; |
| Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling. |
Lindsey, Merry L |
Nature reviews. Cardiology. |
29752454 |
2018 May 11; |
| HUMAN DECISIONS AND MACHINE PREDICTIONS. |
Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil |
The quarterly journal of economics. |
29755141 |
2018 Feb 01; |
| A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data. |
Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David |
International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. |
29755201 |
2017 Nov; |
| Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. |
Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, David |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29755826 |
2017 Aug; |
| Experiences with Deriva: An Asset Management Platform for Accelerating eScience. |
Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, Hongsuda |
Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. |
29756001 |
2017 Oct; |
| ERMrest: A Collaborative Data Catalog with Fine Grain Access Control. |
Czajkowski, Karl; Kesselman, Carl; Schuler, Robert |
Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. |
29756002 |
2017 Oct; |
| Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. |
Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase Consortium |
Methods in molecular biology (Clifton, N.J.). |
29761466 |
2018; |
| Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. |
Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, Clyde |
Proceedings of the National Academy of Sciences of the United States of America. |
29764998 |
; |
| Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. |
Huang, Yingxiang; Lee, Junghye; Wang, Shuang; Sun, Jimeng; Liu, Hongfang; Jiang, Xiaoqian |
JMIR medical informatics |
29769172 |
2018 May 16 |
| Population-Scale Pervasive Health. |
Althoff, Tim |
IEEE pervasive computing. |
29770105 |
Oct-Dec 2017 |
| Snorkel: Rapid Training Data Creation with Weak Supervision. |
Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, Christopher |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
29770249 |
; |
| Network Inference via the Time-Varying Graphical Lasso. |
Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770256 |
; |
| Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. |
Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770257 |
; |
| Local Higher-Order Graph Clustering. |
Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David F |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770258 |
; |
| The Mouse Heart Attack Research Tool 1.0 database. |
DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; Lindse |
American journal of physiology. Heart and circulatory physiology. |
29775405 |
2018 Sep 01; |
| Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. |
Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWei |
American journal of physiology. Heart and circulatory physiology. |
29775406 |
2018 Oct 01; |
| Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. |
Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; Eyewirers |
Cell. |
29775596 |
2018 05 17; |
| Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. |
Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley Y |
Scientific reports. |
29777125 |
2018 May 18; |
| The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. |
Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29780658 |
2017 Aug; |
| Modeling Individual Cyclic Variation in Human Behavior. |
Pierson, Emma; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780976 |
2018 Apr; |
| Modeling Interdependent and Periodic Real-World Action Sequences. |
Kurashima, Takeshi; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780977 |
2018 Apr; |
| I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. |
Lin, Zhiyuan; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780978 |
2018 Apr; |
| Weighted SGD for ? p Regression with Randomized Preconditioning. |
Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael W |
Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. |
29782626 |
2016 Jan; |
| Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. |
Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur W |
Neurobiology of aging. |
29784544 |
2018 Aug; |
| Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence. |
Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H |
Journal of abnormal child psychology. |
29785533 |
2018 May 21; |
| PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. |
Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P |
Journal of the American Medical Informatics Association : JAMIA. |
29788308 |
2018 10 01; |
| Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). |
Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizca |
Proteomics. |
29791771 |
2018 Jun; |
| A Flow Procedure for Linearization of Genome Sequence Graphs. |
Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, Dmitrii |
Journal of computational biology : a journal of computational molecular cell biology. |
29792514 |
2018 07; |
| Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. |
Cheng Ye, M S; Fabbri, Daniel |
Journal of biomedical informatics. |
29793071 |
; |
| Progress Toward Cancer Data Ecosystems. |
Grossman, Robert L |
Cancer journal (Sudbury, Mass.). |
29794537 |
2018 May/Jun; |
| eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. |
Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi |
Nucleic acids research. |
29800326 |
2018 Jul 02; |
| Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. |
Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander |
Journal of chemical information and modeling. |
29809005 |
2018 06 25; |
| Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. |
Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Stroke. |
29844027 |
2018 Jul; |
| Framing Electronic Medical Records as Polylingual Documents in Query Expansion. |
Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854161 |
2017; |
| Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. |
Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854196 |
2017; |
| Mining Hierarchies and Similarity Clusters from Value Set Repositories. |
Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, Hongfang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854206 |
2017; |
| A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. |
Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854240 |
2017; |
| SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. |
Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, Shuang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854245 |
2017; |
| Association between inflammation and systolic blood pressure in RA compared to patients without RA. |
Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P |
Arthritis research & therapy. |
29855349 |
2018 Jun 01; |
| Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. |
Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, Elm |
American journal of human genetics. |
29861106 |
2018 Jun 07; |
| Big data sharing and analysis to advance research in post-traumatic epilepsy. |
Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur W |
Neurobiology of disease. |
29864492 |
2018 Jun 01; |
| The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. |
Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating Center |
Journal of Alzheimer's disease : JAD. |
29865049 |
2018; |
| Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures. |
Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott L |
Journal of biomechanics. |
29866518 |
2018 Jul 25; |
| Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. |
Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep |
IEEE internet computing. |
29867290 |
2018 Mar-Apr; |
| Mapping macrophage polarization over the myocardial infarction time continuum. |
Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry L |
Basic research in cardiology. |
29868933 |
2018 Jun 04; |
| Data Programming: Creating Large Training Sets, Quickly. |
Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, Christopher |
Advances in neural information processing systems. |
29872252 |
2016 Dec; |
| Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. |
La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, Alexander |
Drug safety. |
29876834 |
2018 Jun 06; |
| High-resolution comparative analysis of great ape genomes. |
Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, Fere |
Science (New York, N.Y.). |
29880660 |
; |
| Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Journal of the American Statistical Association. |
29881130 |
; |
| Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. |
Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, Benedict |
Genome research. |
29884752 |
; |
| What's in a Note? Unpacking Predictive Value in Clinical Note Representations. |
Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, Peter |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888035 |
2018; |
| Real-time Protection of Genomic Data Sharing in Beacon Services. |
Bu, Diyue; Wang, Xiaofeng; Tang, Haixu |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888039 |
2018; |
| Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. |
Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, Guoqian |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888045 |
2018; |
| Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age. |
Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth S |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888046 |
2018; |
| A Crowdsourcing Framework for Medical Data Sets. |
Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, Daniel |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888085 |
2018; |
| Network-based approaches to examining stress in the adolescent brain. |
Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian H |
Neurobiology of stress. |
29888310 |
2018 Feb; |
| The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. |
Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN Consortium |
The European journal of neuroscience. |
29889330 |
2019 08; |
| Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. |
Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie E |
Molecular psychiatry. |
29895892 |
2018 Jun 13; |
| Prompting Technology and Persons With Dementia: The Significance of Context and Communication. |
Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, Maureen |
The Gerontologist |
29897450 |
2019 01 09 |
| Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. |
Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, Saurabh |
Genome research. |
29898900 |
2018 08; |
| Causal Discovery from Temporally Aggregated Time Series. |
Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, Dacheng |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
29899680 |
2017 Aug; |
| A Hierarchical Framework for State-Space Matrix Inference and Clustering. |
Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, Sündüz |
The annals of applied statistics. |
29910842 |
2016 Sep; |
| Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction. |
Lindsey, Merry L |
Cardiovascular research. |
29912288 |
2018 Oct 01; |
| Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood. |
Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S |
Cerebral cortex (New York, N.Y. : 1991). |
29912404 |
2019 05 01; |
| Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. |
Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan C |
Scientific data. |
29917015 |
2018 Jun 19; |
| Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. |
Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel T |
Neuron. |
29937276 |
2018 Jul 11; |
| Fonduer: Knowledge Base Construction from Richly Formatted Data. |
NULL |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
29937618 |
2018 Jun; |
| Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. |
Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, Danielle |
Nature genetics. |
29942086 |
2018 Jul; |
| A design framework and exemplar metrics for FAIRness. |
Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, Michel |
Scientific data. |
29944145 |
2018 06 26; |
| Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. |
Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret I |
Human brain mapping. |
29947131 |
2018 Jun 26; |
| Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. |
Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) |
The British journal of psychiatry : the journal of mental science. |
29947313 |
2018 Jul; |
| Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. |
Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby C |
Journal of urban health : bulletin of the New York Academy of Medicine. |
29948785 |
2018 Dec; |
| Modeling polypharmacy side effects with graph convolutional networks. |
Zitnik, Marinka; Agrawal, Monica; Leskovec, Jure |
Bioinformatics (Oxford, England). |
29949996 |
2018 07 01; |
| SigMat: a classification scheme for gene signature matching. |
Xiao, Jinfeng; Blatti, Charles; Sinha, Saurabh |
Bioinformatics (Oxford, England). |
29950002 |
2018 Jul 01; |
| Prioritizing network communities. |
Zitnik, Marinka; Sosi?, Rok; Leskovec, Jure |
Nature communications. |
29959323 |
2018 06 29; |
| Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. |
van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A |
Biological psychiatry. |
29960671 |
2018 May 14; |
| Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. |
Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, Saurabh |
Genes, brain, and behavior. |
29968347 |
2018 Jul 02; |
| Risk Factors for Colistin Resistance among Gram-Negative Rods and Klebsiella pneumoniae Isolates. |
Richter, Stefan E; Miller, Loren; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
Journal of clinical microbiology |
29976595 |
2018 09 |
| A Screening Rule for ?1-Regularized Ising Model Estimation. |
Kuang, Zhaobin; Geng, Sinong; Page, David |
Advances in neural information processing systems. |
29983538 |
2017 Dec; |
| Imaging genetics in neurodevelopmental psychopathology. |
Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, Barbara |
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
29984470 |
2017 07; |
| Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers. |
Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen Horng |
IEEE transactions on visualization and computer graphics. |
29993551 |
2018 Jun 04; |
| SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. |
Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, Shuang |
IEEE/ACM transactions on computational biology and bioinformatics. |
29993695 |
2019 Jan-Feb; |
| SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. |
Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, Shuang |
IEEE/ACM transactions on computational biology and bioinformatics. |
29994005 |
2019 Jan-Feb; |
| Quantitative temporal analysis of protein dynamics in cardiac remodeling. |
McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John R |
Journal of molecular and cellular cardiology. |
30009778 |
2018 Aug; |
| CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. |
Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven H |
BMC bioinformatics. |
30012108 |
2018 Jul 16; |
| A synthetic-diploid benchmark for accurate variant-calling evaluation. |
Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, Daniel |
Nature methods. |
30013044 |
2018 Aug; |
| Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. |
Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu |
NeuroImage. Clinical. |
30013920 |
2018; |
| HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. |
Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna R |
BMC bioinformatics. |
30016933 |
2018 Jul 17; |
| Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. |
Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Journal of proteome research. |
30019906 |
2018 09 07; |
| Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults. |
Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan |
JMIR research protocols. |
30021714 |
2018 Jul 18; |
| Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. |
Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, Sengwee |
Pharmacoepidemiology and drug safety. |
30022561 |
2018 Sep; |
| MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. |
Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30023040 |
2018 Apr; |
| Statistical considerations in reporting cardiovascular research. |
Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, Douglas |
American journal of physiology. Heart and circulatory physiology. |
30028200 |
2018 Aug 01; |
| Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. |
Duncan, Dominique; Garner, Rachael; Zrantchev, Ivan; Ard, Tyler; Newman, Bradley; Saslow, Adam; Wanserski, Emily; Toga, Arthur W |
Journal of digital imaging |
30030766 |
2019 02 |
| Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. |
Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, Neda |
Proceedings of SPIE--the International Society for Optical Engineering. |
30034079 |
2017 Oct; |
| Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. |
Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, Xiaoqian |
IEEE transactions on knowledge and data engineering. |
30034201 |
2018 Mar 01; |
| Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. |
Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, Neda |
CEUR workshop proceedings. |
30034319 |
2017 Oct; |
| ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. |
Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David F |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30034577 |
2018 Apr; |
| Learning causality and causality-related learning: some recent progress. |
Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, Clark |
National science review. |
30034911 |
2018 Jan; |
| Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. |
Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M |
Machine learning in medical imaging. MLMI (Workshop). |
30035274 |
2017 Sep; |
| OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. |
Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi |
PLoS computational biology. |
30048444 |
2018 07; |
| Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. |
Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, Neda |
Frontiers in neuroinformatics. |
30050423 |
2018; |
| Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. |
Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter |
Human brain mapping. |
30052318 |
2018 Dec; |
| Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. |
Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN Consortium |
JAMA psychiatry. |
30073329 |
2018 10 01; |
| Mapping and interpreting the dynamic connectivity of the brain. |
Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, Mark |
NeuroImage. |
30075278 |
2018 10 15; |
| Network enhancement as a general method to denoise weighted biological networks. |
Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, Jure |
Nature communications. |
30082777 |
2018 08 06; |
| A tissue-based draft map of the murine MHC class I immunopeptidome. |
Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, Etienne |
Scientific data. |
30084848 |
2018 08 07; |
| Web services for data warehouses: OMOP and PCORnet on i2b2. |
Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn N |
Journal of the American Medical Informatics Association : JAMIA. |
30085008 |
2018 10 01; |
| Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. |
Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior Consortium |
Schizophrenia research. |
30093352 |
2019 02; |
| Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. |
Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan L |
Science (New York, N.Y.). |
30093596 |
2018 08 10; |
| Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. |
Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; Fonov |
NeuroImage. |
30099076 |
2018 Dec; |
| Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric W |
Journal of proteome research. |
30099871 |
2018 Aug 23; |
| Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. |
Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, David |
Journal of the American College of Radiology : JACR. |
30100161 |
2019 Jan; |
| A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. |
Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN Consortium |
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
30104163 |
2018 10; |
| Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home. |
Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane J |
IEEE journal of biomedical and health informatics. |
30106700 |
2018 Aug 08; |
| Distinct brain structure and behavior related to ADHD and conduct disorder traits. |
Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN Consortium |
Molecular psychiatry. |
30108313 |
2020 Nov; |
| COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. |
Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, Sarah |
Frontiers in genetics. |
30108607 |
; |
| HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. |
Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30123414 |
2018 Apr; |
| Variation graph toolkit improves read mapping by representing genetic variation in the reference. |
Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, Richard |
Nature biotechnology. |
30125266 |
2018 Oct; |
| Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. |
Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, Dexter |
Journal of digital imaging. |
30128778 |
2019 Feb; |
| Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. |
Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S L |
Osteoarthritis and cartilage. |
30130590 |
; |
| LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling. |
DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L |
Basic research in cardiology. |
30132266 |
2018 08 21; |
| Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. |
Can, Anil; Rudy, Robert F; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Neurology |
30135253 |
2018 09 18 |
| EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments. |
Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, Gregory |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
30135957 |
2017 Sep; |
| Scoring Bayesian Networks of Mixed Variables. |
Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F |
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International journal of data science and analytics. |
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PLoS genetics. |
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KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
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Bioinformatics (Oxford, England). |
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Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. |
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Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
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Proceedings of the ACM on human-computer interaction. |
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Bioinformatics (Oxford, England). |
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PloS one. |
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| Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. |
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Journal of proteome research. |
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Nature genetics |
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| mCerebrum: A Mobile Sensing Software Platform for Development and Validation of Digital Biomarkers and Interventions. |
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Journal of visualized experiments : JoVE. |
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| Typing tumors using pathways selected by somatic evolution. |
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2019 Feb 01; |
| Chromosome assembly of large and complex genomes using multiple references. |
Kolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M; Thybert, David; Paten, Benedict; Pham, Son |
Genome research. |
30341161 |
2018 11; |
| atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers. |
NULL |
IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum. |
30349760 |
2018 May; |
| Automated feature selection of predictors in electronic medical records data. |
Gronsbell, Jessica; Minnier, Jessica; Yu, Sheng; Liao, Katherine; Cai, Tianxi |
Biometrics. |
30353541 |
2019 03; |
| Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms. |
Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Stroke. |
30354989 |
2018 Sep; |
| Feasibility and Acceptability of Mobile Phone-Based Auto-Personalized Physical Activity Recommendations for Chronic Pain Self-Management: Pilot Study on Adults. |
Rabbi, Mashfiqui; Aung, Min Sh; Gay, Geri; Reid, M Cary; Choudhury, Tanzeem |
Journal of medical Internet research. |
30368433 |
2018 Oct 26; |
| Engineering induction of singular neural rosette emergence within hPSC-derived tissues. |
Knight, Gavin T; Lundin, Brady F; Iyer, Nisha; Ashton, Lydia Mt; Sethares, William A; Willett, Rebecca M; Ashton, Randolph Scott |
eLife |
30371350 |
2018 10 29 |
| DrugCentral 2018: an update. |
Ursu, Oleg; Holmes, Jayme; Bologa, Cristian G; Yang, Jeremy J; Mathias, Stephen L; Stathias, Vasileios; Nguyen, Dac-Trung; Schürer, Stephan; Oprea, Tudor |
Nucleic acids research. |
30371892 |
2018 Oct 29; |
| Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships. |
Low, Yen S; Alves, Vinicius M; Fourches, Denis; Sedykh, Alexander; Andrade, Carolina Horta; Muratov, Eugene N; Rusyn, Ivan; Tropsha, Alexander |
Journal of chemical information and modeling. |
30376324 |
2018 11 26; |
| Whole-Genome Alignment and Comparative Annotation. |
Armstrong, Joel; Fiddes, Ian T; Diekhans, Mark; Paten, Benedict |
Annual review of animal biosciences. |
30379572 |
2019 Feb 15; |
| Matrix metalloproteinase-12 as an endogenous resolution promoting factor following myocardial infarction. |
Mouton, Alan J; Rivera Gonzalez, Osvaldo J; Kaminski, Amanda R; Moore, Edwin T; Lindsey, Merry L |
Pharmacological research. |
30394317 |
2018 Nov; |
| The PRIDE database and related tools and resources in 2019: improving support for quantification data. |
Perez-Riverol, Yasset; Csordas, Attila; Bai, Jingwen; Bernal-Llinares, Manuel; Hewapathirana, Suresh; Kundu, Deepti J; Inuganti, Avinash; Griss, Johannes; Mayer, Gerhard; Eisenacher, Martin; Pérez, Enrique; Uszkoreit, Julian; Pfeuffer, Julianus; Sachsenberg, Timo; Yilmaz, Sule; Tiwary, Shivani; Cox, Jürgen; Audain, Enrique; Walzer, Mathias; Jarnuczak, Andrew F; Ternent, Tobias; Brazma, Alvis; Vizcaíno, Juan Antonio |
Nucleic acids research. |
30395289 |
2019 Jan 08; |
| Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data. |
Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H |
Scientific reports. |
30397268 |
2018 Nov 05; |
| A Deep Learning Model to Predict a Diagnosis of Alzheimer Disease by Using 18F-FDG PET of the Brain. |
Ding, Yiming; Sohn, Jae Ho; Kawczynski, Michael G; Trivedi, Hari; Harnish, Roy; Jenkins, Nathaniel W; Lituiev, Dmytro; Copeland, Timothy P; Aboian, Mariam S; Mari Aparici, Carina; Behr, Spencer C; Flavell, Robert R; Huang, Shih-Ying; Zalocusky, Kelly A; Nardo, Lorenzo; Seo, Youngho; Hawkins, Randall A; Hernandez Pampaloni, Miguel; Hadley, Dexter; Franc, Benjamin L |
Radiology. |
30398430 |
2019 Feb; |
| Understanding the Hidden Complexity of Latin American Population Isolates. |
Mooney, Jazlyn A; Huber, Christian D; Service, Susan; Sul, Jae Hoon; Marsden, Clare D; Zhang, Zhongyang; Sabatti, Chiara; Ruiz-Linares, Andrés; Bedoya, Gabriel; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Freimer, Nelson; Lohmueller, Kirk E |
American journal of human genetics. |
30401458 |
2018 11 01; |
| Citizen Science for Mining the Biomedical Literature. |
Tsueng, Ginger; Nanis, Steven M; Fouquier, Jennifer; Good, Benjamin M; Su, Andrew I |
Citizen science : theory and practice. |
30416754 |
2016; |
| rConverse: Moment by Moment Conversation Detection Using a Mobile Respiration Sensor. |
Bari, Rummana; Adams, Roy J; Rahman, Mahbubur; Parsons, Megan Battles; Buder, Eugene H; Kumar, Santosh |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
30417165 |
2018 Mar; |
| A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes. |
Dermody, Gordana; Fritz, Roschelle |
Nursing inquiry. |
30417510 |
2018 Nov 12; |
| Elevated allostatic load early in the course of schizophrenia. |
Savransky, Anya; Chiappelli, Joshua; Fisseha, Feven; Wisner, Krista M; Xiaoming, Du; Mirmomen, S Milad; Jones, Aaron D; Adhikari, Bhim M; Bruce, Heather A; Rowland, Laura M; Hong, L Elliot |
Translational psychiatry. |
30420620 |
2018 Nov 12; |
| Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease. |
Tu, Yanshuai; Wen, Chengfeng; Zhang, Wen; Wu, Jianfeng; Zhang, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Reiman, Eric M; Wang, Yalin |
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. |
30440425 |
2018 Jul; |
| A Fast Method for Estimating Statistical Power of Multivariate GWAS in Real Case Scenarios: Examples from the Field of Imaging Genetics. |
Couvy-Duchesne, Baptiste; Strike, Lachlan T; McMahon, Katie L; de Zubicaray, Greig I; Thompson, Paul M; Martin, Nicholas G; Medland, Sarah E; Wright, Margaret J |
Behavior genetics |
30443694 |
2019 01 |
| BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. |
Torre, Denis; Lachmann, Alexander; Ma'ayan, Avi |
Cell systems. |
30447998 |
2018 Nov 08; |
| Mutations of the mitochondrial carrier translocase channel subunit TIM22 cause early-onset mitochondrial myopathy. |
Pacheu-Grau, David; Callegari, Sylvie; Emperador, Sonia; Thompson, Kyle; Aich, Abhishek; Topol, Sarah E; Spencer, Emily G; McFarland, Robert; Ruiz-Pesini, Eduardo; Torkamani, Ali; Taylor, Robert W; Montoya, Julio; Rehling, Peter |
Human molecular genetics. |
30452684 |
2018 12 01; |
| A reference set of curated biomedical data and metadata from clinical case reports. |
Caufield, J Harry; Zhou, Yijiang; Garlid, Anders O; Setty, Shaun P; Liem, David A; Cao, Quan; Lee, Jessica M; Murali, Sanjana; Spendlove, Sarah; Wang, Wei; Zhang, Li; Sun, Yizhou; Bui, Alex; Hermjakob, Henning; Watson, Karol E; Ping, Peipei |
Scientific data. |
30457569 |
2018 Nov 20; |
| Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. |
Tang, Ming; Gao, Chao; Goutman, Stephen A; Kalinin, Alexandr; Mukherjee, Bhramar; Guan, Yuanfang; Dinov, Ivo D |
Neuroinformatics. |
30460455 |
2018 Nov 20; |
| Yum-Me: A Personalized Nutrient-Based Meal Recommender System. |
Yang, Longqi; Hsieh, Cheng-Kang; Yang, Hongjian; Pollak, John P; Dell, Nicola; Belongie, Serge; Cole, Curtis; Estrin, Deborah |
ACM transactions on information systems. |
30464375 |
2017 Aug; |
| Learning Time Series Detection Models from Temporally Imprecise Labels. |
Adams, Roy J; Marlin, Benjamin M |
Proceedings of machine learning research. |
30465043 |
2017 Apr; |
| Repurposing Citizen Science Games as Software Tools for Professional Scientists. |
Cooper, Seth; Sterling, Amy L R; Kleffner, Robert; Silversmith, William M; Siegel, Justin B |
FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. |
30465045 |
2018 Aug; |
| Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers. |
Lituiev, Dmytro S; Trivedi, Hari; Panahiazar, Maryam; Norgeot, Beau; Seo, Youngho; Franc, Benjamin; Harnish, Roy; Kawczynski, Michael; Hadley, Dexter |
Journal of digital imaging. |
30465142 |
2019 Apr; |
| Assessing Time-Varying Causal Effect Moderation in Mobile Health. |
Boruvka, Audrey; Almirall, Daniel; Witkiewitz, Katie; Murphy, Susan A |
Journal of the American Statistical Association. |
30467446 |
2018; |
| EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS. |
Crane, Harry; Dempsey, Walter |
Journal of the American Statistical Association. |
30467447 |
2018; |
| Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. |
Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, William |
IEEE computational intelligence magazine. |
30467458 |
2018 Aug; |
| Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. |
Zitnik, Marinka; Nguyen, Francis; Wang, Bo; Leskovec, Jure; Goldenberg, Anna; Hoffman, Michael M |
An international journal on information fusion. |
30467459 |
2019 Oct; |
| Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? |
van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Clark, Vincent P; Mueller, Bryon A; de Zwarte, Sonja M C; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Gurholt, Tiril P; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Catts, Stanley; Fullerton, Janice M; Green, Melissa J; Henskens, Frans; Jablensky, Assen; Mowry, Bryan J; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Hong, Elliot; Kochunov, Peter; Gur, Raquel E; Gur, Ruben C; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; Potkin, Steven G; Preda, Adrian; Fan, Fengmei; Ehrlich, Stefan; King, Margaret D; De Haan, Lieuwe; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; Pomarol-Clotet, Edith; Kelly, Sinead; Ciufolini, Simone; Radua, Joaquim; Murray, Robin; Marques, Tiago Reis; Simmons, Andrew; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Yun, Je-Yeon; Cannon, Dara M; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; McIntosh, Andrew M; Whalley, Heather C; Knöchel, Christian; Oertel-Knöchel, Viola; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A |
Biological psychiatry. |
30470561 |
2019 04 01; |
| Protein Inference Using PIA Workflows and PSI Standard File Formats. |
Uszkoreit, Julian; Perez-Riverol, Yasset; Eggers, Britta; Marcus, Katrin; Eisenacher, Martin |
Journal of proteome research. |
30474983 |
2019 02 01; |
| Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. |
Köhler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O B; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L; Matentzoglu, Nicolas; McMurry, Julie A; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C; Muaz, Ahmed; Chang, Willie H; Bergerson, Jenna; Laulederkind, Stanley J F; Yüksel, Zafer; Beltran, Sergi; Freeman, Alexandra F; Sergouniotis, Panagiotis I; Durkin, Daniel; Storm, Andrea L; Hanauer, Marc; Brudno, Michael; Bello, Susan M; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A; Gómez-Andrés, David; Lochmüller, Hanns; Dollfus, Hélène; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D; Leroux, Dorothée; Boerkoel, Cornelius F; Klion, Amy; Carter, Melody C; Groza, Tudor; Smedley, Damian; Haendel, Melissa A; Mungall, Chris; Robinson, Peter N |
Nucleic acids research. |
30476213 |
2019 Jan 08; |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. |
Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, Alan |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
30478034 |
2019 Feb 13; |
| A primer on deep learning in genomics. |
Zou, James; Huss, Mikael; Abid, Abubakar; Mohammadi, Pejman; Torkamani, Ali; Telenti, Amalio |
Nature genetics |
30478442 |
2019 01 |
| High-frequency actionable pathogenic exome variants in an average-risk cohort. |
Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael P |
Cold Spring Harbor molecular case studies. |
30487145 |
2018 12; |
| Genomic kinship construction to enhance genetic analyses in the human connectome project data. |
Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David |
Human brain mapping. |
30496643 |
2019 Apr 01; |
| Practical Model Selection for Prospective Virtual Screening. |
Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony |
Journal of chemical information and modeling. |
30500183 |
2019 Jan 28; |
| The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases. |
Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard M |
International journal of molecular sciences. |
30513921 |
2018 Dec 03; |
| Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. |
Walton, E; Hibar, D; Yilmaz, Z; Jahanshad, N; Cheung, J; Batury, V-L; Seitz, J; Bulik, C M; PGC-ED; ENIGMA Genetics Working Group; Thompson, P M; Ehrlich, Stefan |
Molecular neurobiology |
30519816 |
2019 Jul |
| A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. |
Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert L |
Journal of proteome research. |
30523691 |
2019 Feb 01; |
| Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. |
Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, Mary |
Bioscience. |
30524133 |
2018 Dec 01; |
| Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. |
Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
30525907 |
2019 02 01; |
| GOnet: a tool for interactive Gene Ontology analysis. |
Pomaznoy, Mikhail; Ha, Brendan; Peters, Bjoern |
BMC bioinformatics |
30526489 |
2018 Dec 07 |
| Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. |
Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, Guoqian |
BMC medical informatics and decision making. |
30526572 |
2018 12 07; |
| Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. |
Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K |
Cell. |
30528432 |
2018 Dec 13; |
| Genetic analysis of neurodegenerative diseases in a pathology cohort. |
Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, Jin |
Neurobiology of aging. |
30528841 |
2019 Apr; |
| atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. |
Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, Sündüz |
Bioinformatics (Oxford, England). |
30534948 |
2019 08 01; |
| Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. |
Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, Sengwee |
American journal of epidemiology. |
30535131 |
2019 Apr 01; |
| Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults. |
Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur W |
Cerebral cortex (New York, N.Y. : 1991). |
30535294 |
2019 09 13; |
| Peer victimization and its impact on adolescent brain development and psychopathology. |
Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium |
Molecular psychiatry. |
30542059 |
2020 11; |
| Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. |
Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared B |
JMIR mental health. |
30545811 |
2018 Dec 13; |
| ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. |
Fleishman, Greg M; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30546823 |
2017 Apr; |
| A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. |
Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, David |
Methods in molecular biology (Clifton, N.J.). |
30547447 |
2019; |
| A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place. |
Fritz, Roschelle L; Dermody, Gordana |
Nursing outlook. |
30551883 |
2018 Nov 23; |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. |
Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E |
Current biology : CB. |
30554901 |
2019 Jan 07; |
| Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. |
Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, David |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
30555282 |
2018 Aug; |
| Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. |
Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
30555318 |
2018; |
| Exchangeable Markov survival processes and weak continuity of predictive distributions. |
Dempsey, Walter; McCullagh, Peter |
Electronic journal of statistics. |
30555616 |
2017; |
| Using machine learning to identify health outcomes from electronic health record data. |
Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, Sengwee |
Current epidemiology reports. |
30555773 |
2018 Dec; |
| BMI-related cortical morphometry changes are associated with altered white matter structure. |
Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul C |
International journal of obesity (2005). |
30568264 |
2019 03; |
| A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. |
Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
30569583 |
2019 Mar; |
| Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. |
Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark A |
Journal of affective disorders. |
30578947 |
2019 03 01; |
| BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. |
Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda B |
PLoS genetics. |
30586411 |
2018 12; |
| Maximizing the promise of citizen science to advance health and prevent disease. |
King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann W |
Preventive medicine. |
30593793 |
2019 Feb; |
| Mining data and metadata from the gene expression omnibus. |
Wang, Zichen; Lachmann, Alexander; Ma'ayan, Avi |
Biophysical reviews. |
30594974 |
2019 Feb; |
| Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. |
Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas N |
PloS one. |
30596771 |
2018; |
| Discovering functional impacts of miRNAs in cancers using a causal deep learning model. |
Chen, Lujia; Lu, Xinghua |
BMC medical genomics. |
30598118 |
2018 Dec 31; |
| Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. |
Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James S |
American journal of human genetics. |
30609406 |
2019 01 03; |
| Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. |
Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, Marta |
Molecular psychiatry. |
30610198 |
2020 Oct; |
| A Monte Carlo Approach to Skill-Based Automated Playtesting. |
Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, Seth |
Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference. |
30613687 |
2018 Nov; |
| Notch signaling activation induces cell death in MAPKi-resistant melanoma cells. |
Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, Vijayasaradhi |
Pigment cell & melanoma research. |
30614626 |
2019 Jan 07; |
| Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. |
Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, Jianfeng |
eLife. |
30616717 |
2019 Jan 08; |
| Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. |
Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur W |
Frontiers in neuroinformatics. |
30618695 |
2018; |
| Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. |
Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi |
Scientific data. |
30620344 |
2019 Jan 08; |
| Fibroblast polarization over the myocardial infarction time continuum shifts roles from inflammation to angiogenesis. |
Mouton, Alan J; Ma, Yonggang; Rivera Gonzalez, Osvaldo J; Daseke 2nd, Michael J; Flynn, Elizabeth R; Freeman, Tom C; Garrett, Michael R; DeLeon-Pennell, Kristine Y; Lindsey, Merry L |
Basic research in cardiology |
30635789 |
2019 Jan 11 |
| Creating custom Foldit puzzles for teaching biochemistry. |
Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, Scott |
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. |
30638297 |
2019 Jan 14; |
| The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. |
Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata M |
BMC medical research methodology. |
30642260 |
2019 Jan 14; |
| Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. |
Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, Hugh |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
30643026 |
2019 Mar 06; |
| Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. |
Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, Dexter |
JAMA network open. |
30646095 |
2018 08 03; |
| Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2. |
Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M |
Clinical pharmacology and therapeutics. |
30648747 |
2019 Jan 16; |
| PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. |
Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, Vera |
JCO clinical cancer informatics. |
30652605 |
2018 12; |
| A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. |
Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D I |
Behavior genetics. |
30659475 |
2019 05; |
| A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions. |
Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, Inbal |
Multivariate behavioral research. |
30663401 |
2019 Jan 20; |
| Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. |
Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium |
Translational psychiatry. |
30664633 |
2019 Jan 17; |
| Context-Specific Nested Effects Models. |
Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, Mark |
Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-). |
30680375 |
2018 Apr; |
| The principles of tomorrow's university. |
Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, Jay |
F1000Research. |
30687499 |
2018; |
| mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. |
Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew R |
Analytical chemistry. |
30688441 |
2019 Mar 05; |
| Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. |
Grossman, Robert L |
Trends in genetics : TIG. |
30691868 |
2019 Mar; |
| Machine Learning and Integrative Analysis of Biomedical Big Data. |
Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, Peipei |
Genes. |
30696086 |
2019 01 28; |
| Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. |
van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan J |
Journal of affective disorders. |
30699873 |
2019 02 15; |
| Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. |
Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, W |
BMC medical informatics and decision making. |
30700303 |
2019 Jan 31; |
| An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor. |
Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, Scott |
Neuromodulation : journal of the International Neuromodulation Society. |
30701655 |
2019 Jul; |
| Automatic real-time gait event detection in children using deep neural networks. |
Kidzi?ski, ?ukasz; Delp, Scott; Schwartz, Michael |
PloS one. |
30703141 |
2019; |
| Selecting precise reference normal tissue samples for cancer research using a deep learning approach. |
Zeng, William Z D; Glicksberg, Benjamin S; Li, Yangyan; Chen, Bin |
BMC medical genomics. |
30704474 |
2019 Jan 31; |
| Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder. |
Salminen, Lauren E; Morey, Rajendra A; Riedel, Brandalyn C; Jahanshad, Neda; Dennis, Emily L; Thompson, Paul M |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
30714246 |
2019 Feb 03; |
| The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. |
Müller, Christian P; Chu, Congying; Qin, Liya; Liu, Chunyu; Xu, Bing; Gao, He; Ruggeri, Barbara; Hieber, Saskia; Schneider, Julia; Jia, Tianye; Tay, Nicole; Akira, Shizuo; Satoh, Takashi; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Bakalkin, Georgy; Liu, Yun; Desrivières, Sylvane; Elliott, Paul; Eulenburg, Volker; Levy, Daniel; Crews, Fulton; Schumann, Gunter |
Cerebral cortex (New York, N.Y. : 1991). |
30721969 |
2019 04 01; |
| Predicting opioid dependence from electronic health records with machine learning. |
Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, Avi |
BioData mining. |
30728857 |
2019; |
| Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure. |
Deleon-Pennell, Kristine Y; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L |
ACS omega. |
30729226 |
2019 Jan 31; |
| Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images. |
Varghese, Bino; Chen, Frank; Hwang, Darryl; Palmer, Suzanne L; De Castro Abreu, Andre Luis; Ukimura, Osamu; Aron, Monish; Aron, Manju; Gill, Inderbir; Duddalwar, Vinay; Pandey, Gaurav |
Scientific reports. |
30733585 |
2019 Feb 07; |
| ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. |
Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, Guoqian |
Journal of biomedical informatics. |
30738946 |
2019 Mar; |
| Feature extraction for phenotyping from semantic and knowledge resources. |
Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, Sheng |
Journal of biomedical informatics. |
30738949 |
2019 Mar; |
| Feasibility of using social media to monitor outdoor air pollution in London, England. |
Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared B |
Preventive medicine. |
30742873 |
2019 04; |
| Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat. |
Barnett, Brian R; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Sawin, Emily A; Rubinstein, C Dustin; Krentz, Kathleen; Anderson, Jacqueline M; Bakshi, Vaishali P; Yu, John-Paul J |
Translational psychiatry |
30745562 |
2019 Feb 11 |
| DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. |
Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium* |
IEEE transactions on knowledge and data engineering. |
30745791 |
2018 Jul; |
| Using Twitter to Detect Psychological Characteristics of Self-Identified Persons With Autism Spectrum Disorder: A Feasibility Study. |
Hswen, Yulin; Gopaluni, Anuraag; Brownstein, John S; Hawkins, Jared B |
JMIR mHealth and uHealth |
30747718 |
2019 Feb 12 |
| Hyperbolic Wasserstein Distance for Shape Indexing. |
Shi, Jie; Wang, Yalin |
IEEE transactions on pattern analysis and machine intelligence. |
30763239 |
2019 Feb 08; |
| Evolution of resilience in protein interactomes across the tree of life. |
Zitnik, Marinka; Sosi?, Rok; Feldman, Marcus W; Leskovec, Jure |
Proceedings of the National Academy of Sciences of the United States of America. |
30765515 |
2019 Mar 05; |
| Progressive brain atrophy in chronically infected and treated HIV+ individuals. |
Nir, Talia M; Jahanshad, Neda; Ching, Christopher R K; Cohen, Ronald A; Harezlak, Jaroslaw; Schifitto, Giovanni; Lam, Hei Y; Hua, Xue; Zhong, Jianhui; Zhu, Tong; Taylor, Michael J; Campbell, Thomas B; Daar, Eric S; Singer, Elyse J; Alger, Jeffry R; Thomps |
Journal of neurovirology. |
30767174 |
2019 Feb 14; |
| Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. |
Pearl, Jocelynn R; Colantuoni, Carlo; Bergey, Dani E; Funk, Cory C; Shannon, Paul; Basu, Bijoya; Casella, Alex M; Oshone, Rediet T; Hood, Leroy; Price, Nathan D; Ament, Seth A |
Cell systems. |
30772379 |
2019 02 27; |
| An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. |
Pruim, Raimon H R; Beckmann, Christian F; Oldehinkel, Marianne; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Mennes, Maarten |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
30773473 |
2019 05; |
| Instance-Specific Bayesian Network Structure Learning. |
Jabbari, Fattaneh; Visweswaran, Shyam; Cooper, Gregory F |
Proceedings of machine learning research. |
30775723 |
2018 Sep; |
| Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age. |
Booth 3rd, John N; Allen, Norrina B; Calhoun, David; Carson, April P; Deng, Luqin; Goff Jr, David C; Redden, David T; Reis, Jared P; Shimbo, Daichi; Shikany, James M; Sidney, Stephen; Spring, Bonnie; Lewis, Cora E; Muntner, Paul |
American journal of preventive medicine. |
30777156 |
2019 Mar; |
| The variable quality of metadata about biological samples used in biomedical experiments. |
Gonçalves, Rafael S; Musen, Mark A |
Scientific data. |
30778255 |
2019 Feb 19; |
| Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. |
Tkaczyk, Eric R; Coco, Joseph R; Wang, Jianing; Chen, Fuyao; Ye, Cheng; Jagasia, Madan H; Dawant, Benoit M; Fabbri, Daniel |
Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). |
30786065 |
2019 Jul; |
| Wearable Sleep Technology in Clinical and Research Settings. |
DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona C |
Medicine and science in sports and exercise. |
30789439 |
2019 07; |
| Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. |
Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, Clark |
Network neuroscience (Cambridge, Mass.). |
30793083 |
2019; |
| A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. |
Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James R |
The Journal of molecular diagnostics : JMD. |
30797065 |
2019 Feb 20; |
| Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health. |
Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, Susan |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
30801052 |
2018 Dec; |
| Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. |
Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; |
Translational psychiatry. |
30804326 |
2019 Feb 25; |
| Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). |
Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul D |
Nature protocols. |
30804569 |
2019 03; |
| Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. |
Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815098 |
2018; |
| Automated Population of an i2b2 Clinical Data Warehouse using FHIR. |
Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815141 |
2018; |
| Privacy-preserving biomedical data dissemination via a hybrid approach. |
Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, Shuang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815160 |
2018; |
| Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. |
Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth S |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815167 |
2018; |
| Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, Barbara |
The American journal of psychiatry. |
30818988 |
2019 03 01; |
| A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. |
Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, Ross |
Medical decision making : an international journal of the Society for Medical Decision Making. |
30819048 |
2019 04; |
| Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. |
Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby C |
BMC public health. |
30823917 |
2019 Mar 01; |
| Distributed learning from multiple EHR databases: Contextual embedding models for medical events. |
Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi |
Journal of biomedical informatics. |
30825539 |
2019 Apr; |
| Federated discovery and sharing of genomic data using Beacons. |
Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena |
Nature biotechnology. |
30833764 |
2019 03; |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. |
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Current biology : CB. |
30836076 |
2019 Mar 04; |
| Resting-state brain information flow predicts cognitive flexibility in humans. |
Chén, Oliver Y; Cao, Hengyi; Reinen, Jenna M; Qian, Tianchen; Gou, Jiangtao; Phan, Huy; De Vos, Maarten; Cannon, Tyrone D |
Scientific reports. |
30846746 |
2019 03 07; |
| How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). |
Küçük McGinty, Hande; Visser, Ubbo; Schürer, Stephan |
Methods in molecular biology (Clifton, N.J.). |
30848456 |
2019; |
| Leveraging Big Data to Transform Drug Discovery. |
Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, Bin |
Methods in molecular biology (Clifton, N.J.). |
30848458 |
2019; |
| Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. |
Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, Wei |
Methods (San Diego, Calif.). |
30853547 |
2019 Mar 07; |
| Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. |
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Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security. |
30853868 |
2017 Oct-Nov; |
| Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. |
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Journal of visualized experiments : JoVE. |
30855564 |
2019 02 23; |
| SynSys: A Synthetic Data Generation System for Healthcare Applications. |
Dahmen, Jessamyn; Cook, Diane |
Sensors (Basel, Switzerland). |
30857130 |
2019 Mar 08; |
| Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods. |
Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
Open forum infectious diseases. |
30863785 |
2019 Mar; |
| Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. |
Le, Brandon D; Stein, Jason L |
Psychiatry and clinical neurosciences. |
30864184 |
2019 Jul; |
| AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. |
Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, Bin |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
30864327 |
2019; |
| When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. |
Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing |
30864339 |
2019 |
| Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences. |
Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy D |
Cancer. |
30865299 |
2019 Mar 13; |
| ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. |
Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, Scott |
Proceedings of machine learning research. |
30882086 |
2017 Aug; |
| Learning the Structure of Generative Models without Labeled Data. |
Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, Christopher |
Proceedings of machine learning research. |
30882087 |
2017 Aug; |
| The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. |
Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark I |
European journal of epidemiology. |
30887376 |
2019 Mar; |
| Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. |
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Translational psychiatry. |
30902966 |
2019 Mar 22; |
| ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. |
Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun S |
PeerJ. Computer science. |
30906871 |
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Proceedings of machine learning research. |
30906932 |
2017; |
| Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. |
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Disability and rehabilitation. Assistive technology |
30907223 |
2020 05 |
| Comparison of blockchain platforms: a systematic review and healthcare examples. |
Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, Lucila |
Journal of the American Medical Informatics Association : JAMIA. |
30907419 |
2019 05 01; |
| Toward Sensor-Based Sleep Monitoring with Electrodermal Activity Measures. |
Romine, William; Banerjee, Tanvi; Goodman, Garrett |
Sensors (Basel, Switzerland) |
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2019 Mar 22 |
| Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes. |
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Nature biomedical engineering. |
30911429 |
2019 Feb; |
| Anticipating innovations in structural biology. |
Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret J |
Quarterly reviews of biophysics. |
30912485 |
2018 01; |
| Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies. |
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Medicine and science in sports and exercise. |
30913159 |
2019 08; |
| Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. |
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Frontiers in neuroinformatics. |
30914942 |
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| Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. |
Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, Jure |
Proceedings of machine learning research. |
30931433 |
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| Snorkel MeTaL: Weak Supervision for Multi-Task Learning. |
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Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). |
30931438 |
2018 Jun; |
| Learning one's genetic risk changes physiology independent of actual genetic risk. |
Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia J |
Nature human behaviour. |
30932047 |
2019 Jan; |
| Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. |
Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina H |
Computational and structural biotechnology journal. |
30949306 |
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| Causal Discovery from Discrete Data using Hidden Compact Representation. |
Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, Zhifeng |
Advances in neural information processing systems. |
30956519 |
2018 Dec; |
| HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets. |
Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo D |
Journal of statistical computation and simulation. |
30962669 |
2018; |
| A data citation roadmap for scholarly data repositories. |
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Scientific data. |
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| Multi-domain Causal Structure Learning in Linear Systems. |
Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, Kun |
Advances in neural information processing systems. |
30971863 |
2018 Dec; |
| Modeling Dynamic Missingness of Implicit Feedback for Recommendation. |
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Advances in neural information processing systems. |
30971864 |
2018 Dec; |
| Reproducible big data science: A case study in continuous FAIRness. |
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PloS one. |
30973881 |
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| Predictive Big Data Analytics using the UK Biobank Data. |
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Scientific reports. |
30979917 |
2019 Apr 12; |
| Assessing the value of a censored surrogate outcome. |
Parast, Layla; Tian, Lu; Cai, Tianxi |
Lifetime data analysis. |
30980316 |
2019 Apr 12; |
| ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets. |
Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, Nuno |
Journal of proteome research. |
30985146 |
2018 12 07; |
| Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. |
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Scientific reports. |
30988354 |
2019 Apr 15; |
| An average-case sublinear forward algorithm for the haploid Li and Stephens model. |
Rosen, Yohei M; Paten, Benedict J |
Algorithms for molecular biology : AMB. |
30988694 |
2019; |
| Deep Learning Benchmarks on L1000 Gene Expression Data. |
McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy H |
IEEE/ACM transactions on computational biology and bioinformatics. |
30990190 |
2019 Apr 11; |
| Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. |
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Journal of the American Academy of Child and Adolescent Psychiatry. |
31004740 |
2019 11; |
| Adding data provenance support to Apache Spark. |
Interlandi, Matteo; Ekmekji, Ari; Shah, Kshitij; Gulzar, Muhammad Ali; Tetali, Sai Deep; Kim, Miryung; Millstein, Todd; Condie, Tyson |
The VLDB journal : very large data bases : a publication of the VLDB Endowment. |
31007500 |
2018 Oct; |
| Automated Debugging in Data-Intensive Scalable Computing. |
Gulzar, Muhammad Ali; Interlandi, Matteo; Han, Xueyuan; Li, Mingda; Condie, Tyson; Kim, Miryung |
Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). |
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2017 Sep; |
| Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples. |
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The American journal of psychiatry. |
31014101 |
2019 Jul 01; |
| Artificial intelligence in healthcare. |
Yu, Kun-Hsing; Beam, Andrew L; Kohane, Isaac S |
Nature biomedical engineering. |
31015651 |
2018 10; |
| Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. |
Cooper, Daniel J; Schürer, Stephan |
Molecules (Basel, Switzerland). |
31018579 |
2019 Apr 23; |
| Machine learning for phenotyping opioid overdose events. |
Badger, Jonathan; LaRose, Eric; Mayer, John; Bashiri, Fereshteh; Page, David; Peissig, Peggy |
Journal of biomedical informatics. |
31028874 |
2019 Jun; |
| Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV. |
Wade, Benjamin S C; Valcour, Victor G; Puthanakit, Thanyawee; Saremi, Arvin; Gutman, Boris A; Nir, Talia M; Watson, Christa; Aurpibul, Linda; Kosalaraksa, Pope; Ounchanum, Pradthana; Kerr, Stephen; Dumrongpisutikul, Netsiri; Visrutaratna, Pannee; Srinakarin, Jiraporn; Pothisri, Monthana; Narr, Katherine L; Thompson, Paul M; Ananworanich, Jintanat; Paul, Robert H; Jahanshad, Neda; PREDICT and Resilience Study Groups |
NeuroImage. Clinical. |
31029050 |
2019 Apr 02; |
| Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis. |
Ayvaci, Mehmet Ulvi Saygi; Alagoz, Oguzhan; Ahsen, Mehmet Eren; Burnside, Elizabeth S |
Production and operations management. |
31031555 |
2018 Dec; |
| A two-tiered curriculum to improve data management practices for researchers. |
Read, Kevin B; Larson, Catherine; Gillespie, Colleen; Oh, So Young; Surkis, Alisa |
PloS one. |
31042776 |
2019; |
| Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts. |
Paludan-Müller, Christian; Ghouse, Jonas; Vad, Oliver B; Herfelt, Cecilie B; Lundegaard, Pia; Ahlberg, Gustav; Schmitt, Nicole; Svendsen, Jesper H; Haunsø, Stig; Bundgaard, Henning; Hansen, Torben; Kanters, Jørgen K; Olesen, Morten S |
European journal of human genetics : EJHG. |
31043699 |
2019 Sep; |
| Integrating data and knowledge to identify functional modules of genes: a multilayer approach. |
Liang, Lifan; Chen, Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, Songjian |
BMC bioinformatics. |
31046665 |
2019 May 02; |
| Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents. |
Albaugh, Matthew D; Hudziak, James J; Orr, Catherine; Spechler, Philip A; Chaarani, Bader; Mackey, Scott; Lepage, Claude; Fonov, Vladimir; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium |
PloS one. |
31048888 |
2019; |
| Imputation Strategy for Reliable Regional MRI Morphological Measurements. |
Sta Cruz, Shaina; Dinov, Ivo D; Herting, Megan M; González-Zacarías, Clio; Kim, Hosung; Toga, Arthur W; Sepehrband, Farshid |
Neuroinformatics. |
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| Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows. |
Huang, Biwei; Zhang, Kun; Zhang, Jiji; Sanchez-Romero, Ruben; Glymour, Clark; Schölkopf, Bernhard |
Proceedings. IEEE International Conference on Data Mining. |
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| modEnrichr: a suite of gene set enrichment analysis tools for model organisms. |
Kuleshov, Maxim V; Diaz, Jennifer E L; Flamholz, Zachary N; Keenan, Alexandra B; Lachmann, Alexander; Wojciechowicz, Megan L; Cagan, Ross L; Ma'ayan, Avi |
Nucleic acids research. |
31069376 |
2019 Jul 02; |
| Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms. |
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Biological psychiatry. Cognitive neuroscience and neuroimaging. |
31072760 |
2019 Jul; |
| The Effect of Cardiac Preservation Solutions on Heart Transplant Survival. |
Carter, Kristen T; Lirette, Seth T; Baran, David A; Creswell, Lawrence L; Panos, Anthony L; Cochran, Richard P; Copeland, Jack G; Copeland, Hannah |
The Journal of surgical research. |
31078900 |
2019 10; |
| Proteomics Standards Initiative Extended FASTA Format. |
Binz, Pierre-Alain; Shofstahl, Jim; Vizcaíno, Juan Antonio; Barsnes, Harald; Chalkley, Robert J; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K; Lane, Lydie; Seymour, Sean L; Sánchez, Luis Francisco Hernández; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A; Mendoza, Luis; Baker, Peter R; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W |
Journal of proteome research. |
31081335 |
2019 Jun 07; |
| Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort. |
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Psychological medicine |
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| Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. |
Liu, Ke; Newbury, Patrick A; Glicksberg, Benjamin S; Zeng, William Z D; Paithankar, Shreya; Andrechek, Eran R; Chen, Bin |
Nature communications. |
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2019 05 15; |
| Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness. |
Barnett, Brian R; Anderson, Jacqueline M; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Yu, John-Paul J |
Magnetic resonance imaging. |
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| Automated Phrase Mining from Massive Text Corpora. |
Shang, Jingbo; Liu, Jialu; Jiang, Meng; Ren, Xiang; Voss, Clare R; Han, Jiawei |
IEEE transactions on knowledge and data engineering. |
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| Identifying the molecular and cellular signature of cardiac dilation following myocardial infarction. |
Lindsey, Merry L; Ma, Yonggang; Flynn, Elizabeth R; Winniford, Michael D; Hall, Michael E; DeLeon-Pennell, Kristine Y |
Biochimica et biophysica acta. Molecular basis of disease. |
31109452 |
2019 Jul 01; |
| ChEA3: transcription factor enrichment analysis by orthogonal omics integration. |
Keenan, Alexandra B; Torre, Denis; Lachmann, Alexander; Leong, Ariel K; Wojciechowicz, Megan L; Utti, Vivian; Jagodnik, Kathleen M; Kropiwnicki, Eryk; Wang, Zichen; Ma'ayan, Avi |
Nucleic acids research. |
31114921 |
2019 Jul 02; |
| Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents. |
Bartholdy, Savani; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; IMAGEN Consortium |
Biological psychiatry. |
31122340 |
2019 06 01; |
| The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. |
Avesani, Paolo; McPherson, Brent; Hayashi, Soichi; Caiafa, Cesar F; Henschel, Robert; Garyfallidis, Eleftherios; Kitchell, Lindsey; Bullock, Daniel; Patterson, Andrew; Olivetti, Emanuele; Sporns, Olaf; Saykin, Andrew J; Wang, Lei; Dinov, Ivo; Hancock, David; Caron, Bradley; Qian, Yiming; Pestilli, Franco |
Scientific data. |
31123325 |
2019 May 23; |
| Design, construction, and validation of optogenetic proteins. |
O'Banion, Colin P; Goswami, Anwesha; Lawrence, David S |
Methods in enzymology. |
31128778 |
2019; |
| Training Classifiers with Natural Language Explanations. |
Hancock, Braden; Bringmann, Martin; Varma, Paroma; Liang, Percy; Wang, Stephanie; Ré, Christopher |
Proceedings of the conference. Association for Computational Linguistics. Meeting. |
31130772 |
2018 Jul; |
| Learning Compressed Transforms with Low Displacement Rank. |
Thomas, Anna T; Gu, Albert; Dao, Tri; Rudra, Atri; Ré, Christopher |
Advances in neural information processing systems. |
31130799 |
2018 Dec; |
| A two-pronged progress in structured dense matrixvector multiplication. |
De Sa, Christopher; Gu, Albert; Puttagunta, Rohan; Ré, Christopher; Rudra, Atri |
Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. |
31130802 |
2018 Jan; |
| Representation Tradeoffs for Hyperbolic Embeddings. |
De Sa, Christopher; Gu, Albert; Ré, Christopher; Sala, Frederic |
Proceedings of machine learning research. |
31131375 |
2018; |
| Exploring the Utility of Developer Exhaust. |
Zhang, Jian; Lam, Max; Wang, Stephanie; Varma, Paroma; Nardi, Luigi; Olukotun, Kunle; Ré, Christopher |
Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). |
31131381 |
2018 Jun; |
| 10Kin1day: A Bottom-Up Neuroimaging Initiative. |
van den Heuvel, Martijn P; Scholtens, Lianne H; van der Burgh, Hannelore K; Agosta, Federica; Alloza, Clara; Arango, Celso; Auyeung, Bonnie; Baron-Cohen, Simon; Basaia, Silvia; Benders, Manon J N L; Beyer, Frauke; Booij, Linda; Braun, Kees P J; Filho, Geraldo Busatto; Cahn, Wiepke; Cannon, Dara M; Chaim-Avancini, Tiffany M; Chan, Sandra S M; Chen, Eric Y H; Crespo-Facorro, Benedicto; Crone, Eveline A; Dannlowski, Udo; de Zwarte, Sonja M C; Dietsche, Bruno; Donohoe, Gary; Plessis, Stefan Du; Durston, Sarah; Díaz-Caneja, Covadonga M; Díaz-Zuluaga, Ana M; Emsley, Robin; Filippi, Massimo; Frodl, Thomas; Gorges, Martin; Graff, Beata; Grotegerd, Dominik; G?secki, Dariusz; Hall, Julie M; Holleran, Laurena; Holt, Rosemary; Hopman, Helene J; Jansen, Andreas; Janssen, Joost; Jodzio, Krzysztof; Jäncke, Lutz; Kaleda, Vasiliy G; Kassubek, Jan; Masouleh, Shahrzad Kharabian; Kircher, Tilo; Koevoets, Martijn G J C; Kostic, Vladimir S; Krug, Axel; Lawrie, Stephen M; Lebedeva, Irina S; Lee, Edwin H M; Lett, Tristram A; Lewis, Simon J G; Liem, Franziskus; Lombardo, Michael V; Lopez-Jaramillo, Carlos; Margulies, Daniel S; Markett, Sebastian; Marques, Paulo; Martínez-Zalacaín, Ignacio; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; Meinert, Susanne L; Menchón, José M; Montag, Christian; Moreira, Pedro S; Morgado, Pedro; Mothersill, David O; Mérillat, Susan; Müller, Hans-Peter; Nabulsi, Leila; Najt, Pablo; Narkiewicz, Krzysztof; Naumczyk, Patrycja; Oranje, Bob; Ortiz-Garcia de la Foz, Victor; Peper, Jiska S; Pineda, Julian A; Rasser, Paul E; Redlich, Ronny; Repple, Jonathan; Reuter, Martin; Rosa, Pedro G P; Ruigrok, Amber N V; Sabisz, Agnieszka; Schall, Ulrich; Seedat, Soraya; Serpa, Mauricio H; Skouras, Stavros; Soriano-Mas, Carles; Sousa, Nuno; Szurowska, Edyta; Tomyshev, Alexander S; Tordesillas-Gutierrez, Diana; Valk, Sofie L; van den Berg, Leonard H; van Erp, Theo G M; van Haren, Neeltje E M; van Leeuwen, Judith M C; Villringer, Arno; Vinkers, Christiaan H; Vollmar, Christian; Waller, Lea; Walter, Henrik; Whalley, Heather C; Witkowska, Marta; Witte, A Veronica; Zanetti, Marcus V; Zhang, Rui; de Lange, Siemon C |
Frontiers in neurology. |
31133958 |
2019; |
| Multi-Site Meta-Analysis of Morphometry. |
Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady; Hibar, Derrek P; Gutman, Boris A; Tustison, Nicholas J; Adams, Hieab H H; Niessen, Wiro J; Vernooij, Meike W; Ikram, M Arfan; Zwiers, Marcel P; Vasquez, Alejandro Arias; Franke, Barbara; Kroll, Jennifer L; Mwangi, Benson; Soares, Jair C; Ing, Alex; Desrivieres, Sylvane; Schumann, Gunter; Hansell, Narelle K; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M |
IEEE/ACM transactions on computational biology and bioinformatics. |
31135366 |
2019 Sep-Oct; |
| Optogenetic perturbation of the biochemical pathways that control cell behavior. |
Haar, Lauren L; Lawrence, David S; Hughes, Robert M |
Methods in enzymology. |
31155059 |
2019; |
| Haplotype-aware diplotyping from noisy long reads. |
Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, Benedict |
Genome biology. |
31159868 |
2019 06 03; |
| De novo protein design by citizen scientists. |
Koepnick, Brian; Flatten, Jeff; Husain, Tamir; Ford, Alex; Silva, Daniel-Adriano; Bick, Matthew J; Bauer, Aaron; Liu, Gaohua; Ishida, Yojiro; Boykov, Alexander; Estep, Roger D; Kleinfelter, Susan; Nørgård-Solano, Toke; Wei, Linda; Players, Foldit; Montelione, Gaetano T; DiMaio, Frank; Popovi?, Zoran; Khatib, Firas; Cooper, Seth; Baker, David |
Nature. |
31168091 |
2019 Jun; |
| Rapid energy expenditure estimation for ankle assisted and inclined loaded walking. |
Slade, Patrick; Troutman, Rachel; Kochenderfer, Mykel J; Collins, Steven H; Delp, Scott L |
Journal of neuroengineering and rehabilitation. |
31171003 |
2019 Jun 06; |
| Quantifying performance of machine learning methods for neuroimaging data. |
Jollans, Lee; Boyle, Rory; Artiges, Eric; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Martinot, Jean-Luc; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Whelan, Robert |
NeuroImage. |
31173905 |
2019 Oct 01; |
| Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. |
Burnside, Elizabeth S; Trentham-Dietz, Amy; Shafer, Christina M; Hampton, John M; Alagoz, Oguz; Cox, Jennifer R; Mischo, Eric; Schrager, Sarina B; Wilke, Lee G |
Radiology. |
31184557 |
2019 Aug; |
| Accelerated Stochastic Power Iteration. |
De Sa, Christopher; He, Bryan; Mitliagkas, Ioannis; Ré, Christopher; Xu, Peng |
Proceedings of machine learning research. |
31187095 |
2018; |
| Inferring causation from time series in Earth system sciences. |
Runge, Jakob; Bathiany, Sebastian; Bollt, Erik; Camps-Valls, Gustau; Coumou, Dim; Deyle, Ethan; Glymour, Clark; Kretschmer, Marlene; Mahecha, Miguel D; Muñoz-Marí, Jordi; van Nes, Egbert H; Peters, Jonas; Quax, Rick; Reichstein, Markus; Scheffer, Marten; Schölkopf, Bernhard; Spirtes, Peter; Sugihara, George; Sun, Jie; Zhang, Kun; Zscheischler, Jakob |
Nature communications. |
31201306 |
2019 Jun 14; |
| Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. |
Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A |
Database : the journal of biological databases and curation. |
31210270 |
2019 01 01; |
| Review of Causal Discovery Methods Based on Graphical Models. |
Glymour, Clark; Zhang, Kun; Spirtes, Peter |
Frontiers in genetics. |
31214249 |
2019; |
| Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models. |
Ming, Chang; Viassolo, Valeria; Probst-Hensch, Nicole; Chappuis, Pierre O; Dinov, Ivo D; Katapodi, Maria C |
Breast cancer research : BCR. |
31221197 |
2019 06 20; |
| Augmenting subnetwork inference with information extracted from the scientific literature. |
Kiblawi, Sid; Chasman, Deborah; Henning, Amanda; Park, Eunju; Poon, Hoifung; Gould, Michael; Ahlquist, Paul; Craven, Mark |
PLoS computational biology. |
31246951 |
2019 Jun; |
| Pathway-level information extractor (PLIER) for gene expression data. |
Mao, Weiguang; Zaslavsky, Elena; Hartmann, Boris M; Sealfon, Stuart C; Chikina, Maria |
Nature methods. |
31249421 |
2019 07; |
| Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. |
Alves, Vinicius M; Hwang, Duhyeong; Muratov, Eugene; Sokolsky-Papkov, Marina; Varlamova, Ekaterina; Vinod, Natasha; Lim, Chaemin; Andrade, Carolina H; Tropsha, Alexander; Kabanov, Alexander |
Science advances. |
31249867 |
2019 06; |
| A model for initiating research data management services at academic libraries. |
Read, Kevin B; Koos, Jessica; Miller, Rebekah S; Miller, Cathryn F; Phillips, Gesina A; Scheinfeld, Laurel; Surkis, Alisa |
Journal of the Medical Library Association : JMLA. |
31258450 |
2019 Jul; |
| Privacy-Preserving Collaborative Prediction using Random Forests. |
Giacomelli, Irene; Jha, Somesh; Kleiman, Ross; Page, David; Yoon, Kyonghwan |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
31258977 |
2019; |
| Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. |
Kleiman, Ross; Kuusisto, Finn; Ross, Ian; Peissig, Peggy L; Stewart, Ron; Page, C David; Weiss, Jeremy |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
31259012 |
2019; |
| Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. |
Martínez-Bartolomé, Salvador; Bamberger, Tom Casimir; Lavallée-Adam, Mathieu; McClatchy, Daniel B; Yates 3rd, John R |
Journal of proteome research. |
31260318 |
2019 08 02; |
| Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. |
Kühn, Simone; Mascharek, Anna; Banaschewski, Tobias; Bodke, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivieres, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomas; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lindenberger, Ulman; Gallinat, Jürgen; IMAGEN Consortium |
eLife. |
31262402 |
2019 Jul 02; |
| Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. |
Salminen, Lauren E; Wilcox, Rand R; Zhu, Alyssa H; Riedel, Brandalyn C; Ching, Christopher R K; Rashid, Faisal; Thomopoulos, Sophia I; Saremi, Arvin; Harrison, Marc B; Ragothaman, Anjanibhargavi; Knight, Victoria; Boyle, Christina P; Medland, Sarah E; Thompson, Paul M; Jahanshad, Neda |
Cerebral cortex (New York, N.Y. : 1991). |
31271414 |
2019 Jul 04; |
| The joint effect of aging and HIV infection on microstructure of white matter bundles. |
Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April D |
Human brain mapping. |
31271489 |
2019 10 15; |
| OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. |
He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander D |
BMC bioinformatics. |
31272389 |
2019 Apr 25; |
| Reporting and connecting cell type names and gating definitions through ontologies. |
Overton, James A; Vita, Randi; Dunn, Patrick; Burel, Julie G; Bukhari, Syed Ahmad Chan; Cheung, Kei-Hoi; Kleinstein, Steven H; Diehl, Alexander D; Peters, Bjoern |
BMC bioinformatics |
31272390 |
2019 Apr 25 |
| Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. |
Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, Rima |
Translational psychiatry. |
31273200 |
2019 Jul 04; |
| Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. |
Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, Xinghua |
PLoS computational biology. |
31276486 |
2019 07; |
| PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. |
Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert L |
Journal of proteome research. |
31290668 |
2019 Jul 10; |
| Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. |
Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard M |
Drug metabolism and disposition: the biological fate of chemicals. |
31292129 |
2019 09; |
| Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. |
Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA Consortium |
Human mutation. |
31294896 |
2019 Sep; |
| Best practices for analyzing large-scale health data from wearables and smartphone apps. |
Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott L |
NPJ digital medicine. |
31304391 |
2019; |
| Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences. |
Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James R |
Nature communications. |
31308376 |
2019 Jul 15; |
| Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. |
Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H |
Social cognitive and affective neuroscience. |
31309969 |
2019 07 31; |
| Functional network connectivity impairments and core cognitive deficits in schizophrenia. |
Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, Peter |
Human brain mapping. |
31313441 |
2019 11 01; |
| Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion. |
Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter L |
International journal of data science and analytics. |
31321289 |
2018 Aug; |
| Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. |
Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN Consortium |
Journal of the American Academy of Child and Adolescent Psychiatry |
31326579 |
2020 05 |
| Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. |
Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN Consortium |
Addiction biology. |
31328396 |
2020 May; |
| iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. |
Rojo, Constanza; Zhang, Qi; Kele?, Sündüz |
Genetic epidemiology. |
31328826 |
2019 10; |
| We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? |
Wheeler, Nicole |
Thorax. |
31331948 |
2019 Sep; |
| White Matter in Schizophrenia Treatment Resistance. |
Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L Elliot |
The American journal of psychiatry. |
31352812 |
2019 10 01; |
| No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. |
de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, Clyde |
The American journal of psychiatry. |
31352813 |
2019 12 01; |
| Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. |
O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David S |
Cell chemical biology. |
31353320 |
2019 Oct 17; |
| Temporal Poisson Square Root Graphical Models. |
Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, David |
Proceedings of machine learning research. |
31355361 |
2018 Jul; |
| ROBOT: A Tool for Automating Ontology Workflows. |
Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James A |
BMC bioinformatics. |
31357927 |
2019 Jul 29; |
| Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. |
Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie E |
Molecular psychiatry. |
31358905 |
2019 Jul 29; |
| New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. |
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Nature human behaviour. |
31358974 |
2019 09; |
| Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. |
Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew I |
Human computation (Fairfax, Va.). |
31363486 |
2019; |
| PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. |
Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc |
GigaScience. |
31363752 |
2019 08 01; |
| Sequence tube maps: making graph genomes intuitive to commuters. |
Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel R |
Bioinformatics (Oxford, England). |
31368484 |
2019 Dec 15; |
| Predicting kinase inhibitors using bioactivity matrix derived informer sets. |
Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael A |
PLoS computational biology. |
31381559 |
2019 08; |
| Quantifying the impact of public omics data. |
Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, Henning |
Nature communications. |
31383865 |
2019 Aug 05; |
| Architecture and usability of OntoKeeper, an ontology evaluation tool. |
Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, Cui |
BMC medical informatics and decision making. |
31391056 |
2019 08 08; |
| Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. |
Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, M |
Nature communications. |
31395879 |
2019 Aug 08; |
| Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. |
Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam A |
Arthritis & rheumatology (Hoboken, N.J.). |
31397047 |
2019 Aug 08; |
| APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment. |
Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageing |
Journal of Alzheimer's disease : JAD. |
31424388 |
2019; |
| Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric W |
Journal of proteome research. |
31430157 |
2019 Dec 06; |
| Context-Aware Delivery of Ecological Momentary Assessment. |
Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane J |
IEEE journal of biomedical and health informatics |
31443058 |
2020 04 |
| The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. |
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Biological psychiatry. |
31443932 |
2019 10 01; |
| Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. |
Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, Sengwee |
Statistical methods in medical research. |
31448681 |
2019 Aug 26; |
| Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types. |
Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F |
Proceedings of machine learning research. |
31453569 |
2019 Aug; |
| Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. |
Kim, Kunhee; Baik, Hyungryul; Jang, Chloe Soohyun; Roh, Jin Kyung; Eskin, Eleazer; Han, Buhm |
Genome biology |
31455387 |
2019 08 27 |
| Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials. |
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Statistics in biosciences. |
31462937 |
2019 Jul; |
| Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. |
Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert F |
Journal of neurotrauma. |
31469049 |
2020 Jan 15; |
| White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. |
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Molecular psychiatry. |
31471575 |
2019 Aug 30; |
| A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. |
McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, Davide |
eLife. |
31478838 |
2019 09 03; |
| Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. |
Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan H |
PLoS computational biology. |
31479500 |
2019 09; |
| Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. |
Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter N |
Current protocols in human genetics. |
31479590 |
2019 Sep; |
| A privacy-preserving distributed filtering framework for NLP artifacts. |
Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, Xiaoqian |
BMC medical informatics and decision making. |
31493797 |
2019 Sep 07; |
| Low-Dimensional Density Ratio Estimation for Covariate Shift Correction. |
Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun |
Proceedings of machine learning research. |
31497776 |
2019 Apr; |
| Data-Driven Approach to Multiple-Source Domain Adaptation. |
Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun |
Proceedings of machine learning research. |
31497777 |
2019 Apr; |
| Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models. |
Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, Clark |
Proceedings of machine learning research. |
31497778 |
2019 Jun; |
| dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). |
Versmée, Grégoire; Versmée, Laura; Dusenne, Mikaël; Jalali, Niloofar; Avillach, Paul |
Bioinformatics (Oxford, England) |
31504194 |
2020 02 15 |
| Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. |
Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew I |
Bioinformatics (Oxford, England). |
31504205 |
2019 Sep 03; |
| The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment. |
Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun S |
Frontiers in genetics. |
31507631 |
2019; |
| Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. |
Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, Wei |
Bioinformatics (Oxford, England). |
31510705 |
2019 07 15; |
| Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. |
Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, Xinghua |
Scientific reports. |
31519988 |
2019 Sep 13; |
| Amalgamating evidence of dynamics. |
Danks, David; Plis, Sergey |
Synthese. |
31527987 |
2019 Aug; |
| Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. |
Kumar, Srijan; Zhang, Xikun; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
31538030 |
2019 Aug; |
| Inferring Multidimensional Rates of Aging from Cross-Sectional Data. |
Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, Percy |
Proceedings of machine learning research. |
31538144 |
2019 Apr; |
| Predicting pregnancy using large-scale data from a women's health tracking mobile application. |
Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
31538145 |
2019 May; |
| Evaluating FAIR maturity through a scalable, automated, community-governed framework. |
Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, Erik |
Scientific data. |
31541130 |
2019 09 20; |
| The case for openness in engineering research. |
Berg, Devin R; Niemeyer, Kyle E |
F1000Research. |
31543946 |
2018; |
| A fast divide-and-conquer sparse Cox regression. |
Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, Tianxi |
Biostatistics (Oxford, England) |
31545341 |
2021 Apr 10 |
| Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. |
Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew L |
PloS one |
31553719 |
2019 |
| Learning Disentangled Semantic Representation for Domain Adaptation. |
Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, Zhifeng |
IJCAI : proceedings of the conference. |
31555039 |
2019 Aug; |
| Domain Generalization via Multidomain Discriminant Analysis. |
Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, Laiwan |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
31555066 |
2019 Jul; |
| The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. |
Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur W |
Frontiers in neuroinformatics |
31555116 |
2019 |
| Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria. |
Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina Horta |
Future medicinal chemistry. |
31556721 |
2019 10; |
| Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. |
Wood, Mollie E; Andrade, Susan E; Toh, Sengwee |
Clinical therapeutics. |
31563392 |
2019 Sep 25; |
| Robot-Enabled Support of Daily Activities in Smart Home Environments. |
Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane J |
Cognitive systems research. |
31565029 |
2019 May; |
| Training Complex Models with Multi-Task Weak Supervision. |
Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, Christopher |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence. |
31565535 |
2019 Jan-Feb; |
| Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. |
Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, Daniel |
Statistical methods in medical research. |
31571526 |
2019 Oct 01; |
| Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. |
Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen M |
Journal of proteome research. |
31573204 |
2019 Dec 06; |
| Medical device surveillance with electronic health records. |
Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam H |
NPJ digital medicine. |
31583282 |
2019; |
| Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers. |
Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory D |
The Journal of surgical research. |
31586890 |
2020 02; |
| Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. |
Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott L |
PLoS computational biology. |
31589597 |
2019 10; |
| A Logical Model of Homology for Comparative Biology. |
Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J |
Systematic biology |
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2020 03 01 |
| An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. |
Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, Guoqian |
Journal of healthcare informatics research. |
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2019 Sep; |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. |
Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S |
Journal of proteome research. |
31599596 |
2019 Dec 06; |
| Transcriptional regulatory model of fibrosis progression in the human lung. |
McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, Naftali |
JCI insight. |
31600171 |
2019 Nov 14; |
| Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. |
Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Scientific reports. |
31601890 |
2019 Oct 10; |
| DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. |
Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank A |
BMC bioinformatics. |
31604420 |
2019 Oct 11; |
| High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. |
Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA. |
31613361 |
2019 11 01; |
| An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. |
Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, Thomas |
Psychological medicine. |
31615588 |
2020 09; |
| Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. |
Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul J |
Scientific data. |
31615985 |
2019 10 15; |
| Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. |
Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, Robert |
AIDS research and human retroviruses. |
31617381 |
2020 01; |
| Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. |
Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian |
Journal of biomedical informatics. |
31622801 |
2019 Nov; |
| Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. |
Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN Consortium |
Addictive behaviors. |
31622946 |
2020 01; |
| Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. |
Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon E |
Philosophical transactions of the Royal Society of London. Series B, Biological sciences. |
31630655 |
2019 12 09; |
| Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. |
Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, Peter |
Human brain mapping. |
31633254 |
2020 Feb 15; |
| Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. |
Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET study |
AIDS care. |
31635484 |
2020 04; |
| SMARTS: the social media-based addiction recovery and intervention targeting server. |
Jha, Deeptanshu; Singh, Rahul |
Bioinformatics (Oxford, England) |
31647520 |
2019 Oct 24 |
| TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome. |
Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, Peipei |
Gene. |
31647997 |
2020 Feb 05; |
| Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. |
Brown, Katelyn D; Schmitter-Edgecombe, Maureen |
Journal of clinical and experimental neuropsychology |
31658865 |
2020 02 |
| A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. |
Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan H |
The Journal of the American Academy of Orthopaedic Surgeons. |
31663914 |
2019 Oct 24; |
| Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. |
Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole A |
JAMA psychiatry |
31665216 |
2020 04 01 |
| Risk factors for development of aminoglycoside resistance among gram-negative rods. |
Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists. |
31665763 |
2019 10 30; |
| Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. |
Postema, Merel C; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Filho, Geraldo Busatto; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis S; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Feng, Xin; Fitzgerald, Jackie; Floris, Dorothea L; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Kong, Xiang Zhen; Lazaro, Luisa; Lerch, Jason P; Luna, Beatriz; Martinho, Mauricio M; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Puig, Olga; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde |
Nature communications |
31673008 |
2019 10 31 |
| Identifying biological markers for improved precision medicine in psychiatry. |
Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium |
Molecular psychiatry. |
31676814 |
2020 Feb; |
| FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. |
Clarke, Daniel J B; Wang, Lily; Jones, Alex; Wojciechowicz, Megan L; Torre, Denis; Jagodnik, Kathleen M; Jenkins, Sherry L; McQuilton, Peter; Flamholz, Zachary; Silverstein, Moshe C; Schilder, Brian M; Robasky, Kimberly; Castillo, Claris; Idaszak, Ray; Ahalt, Stanley C; Williams, Jason; Schurer, Stephan; Cooper, Daniel J; de Miranda Azevedo, Ricardo; Klenk, Juergen A; Haendel, Melissa A; Nedzel, Jared; Avillach, Paul; Shimoyama, Mary E; Harris, Rayna M; Gamble, Meredith; Poten, Rudy; Charbonneau, Amanda L; Larkin, Jennie; Brown, C Titus; Bonazzi, Vivien R; Dumontier, Michel J; Sansone, Susanna-Assunta; Ma'ayan, Avi |
Cell systems |
31677972 |
2019 11 27 |
| The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. |
Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan A |
Nucleic acids research. |
31686107 |
2020 Jan 08; |
| LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. |
Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan C |
Nucleic acids research. |
31701147 |
2020 01 08; |
| Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. |
Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, Bjoern |
Scientific reports. |
31704962 |
2019 Nov 08; |
| Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. |
Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, Scott |
PLoS biology. |
31714936 |
2019 11; |
| Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. |
Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur W |
Alcohol (Fayetteville, N.Y.). |
31734309 |
2020 Jun; |
| Nanopore native RNA sequencing of a human poly(A) transcriptome. |
Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston |
Nature methods |
31740818 |
2019 12 |
| When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications. |
Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas |
Proceedings of machine learning research. |
31742253 |
2017 Aug; |
| Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. |
Meng, Weida; Sjöholm, Louise K; Kononenko, Olga; Tay, Nicole; Zhang, Dandan; Sarkisyan, Daniil; Geske, Jennifer R; Ing, Alex; Qiu, Wenqing; Watanabe, Hiroyuki; Almamoun, Radwa; Frieling, Helge; Bleich, Stefan; Cui, Donghong; Biernacka, Joanna M; Mayfield, R Dayne; Dang, Yongjun; Karpyak, Victor M; Schumann, Gunter; IMAGEN Consortium; Bakalkin, Georgy; Ekström, Tomas J; Rüegg, Joelle; Liu, Yun |
Molecular psychiatry |
31745236 |
2021 08 |
| Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. |
Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh |
Addiction biology. |
31746534 |
2019 Nov 20; |
| Sympathetic activity contributes to the fMRI signal. |
Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff |
Communications biology. |
31754651 |
2019; |
| Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. |
Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen |
Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play. |
31768505 |
2019 Oct; |
| Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale. |
Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, Rob |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
31777414 |
2019 Jun-Jul; |
| Snuba: Automating Weak Supervision to Label Training Data. |
Varma, Paroma; Ré, Christopher |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
31777681 |
2018 Nov; |
| Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation. |
Zhang, Jian; May, Avner; Dao, Tri; Ré, Christopher |
Proceedings of machine learning research. |
31777846 |
2019 Apr; |
| Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. |
Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, Christopher |
Proceedings of machine learning research. |
31777847 |
2019 Jun; |
| A Kernel Theory of Modern Data Augmentation. |
Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, Christopher |
Proceedings of machine learning research. |
31777848 |
2019 Jun; |
| Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. |
Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy Seif |
FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. |
31788674 |
2019 Aug; |
| From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer. |
Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, Xinghua |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
31797588 |
2020; |
| Navigating ethical quandaries with the privacy dilemma of biomedical datasets. |
Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
31797643 |
2020; |
| Recursive Feature Elimination by Sensitivity Testing. |
Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, David |
Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. |
31799516 |
2018 Dec; |
| Reactome and ORCID-fine-grained credit attribution for community curation. |
Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
Database : the journal of biological databases and curation. |
31802127 |
2019 01 01; |
| Learning the Structure of a Nonstationary Vector Autoregression. |
Malinsky, Daniel; Spirtes, Peter |
Proceedings of machine learning research. |
31803862 |
2019 Apr; |
| Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. |
Shu, Di; Young, Jessica G; Toh, Sengwee |
BMC medical research methodology. |
31805872 |
2019 Dec 05; |
| Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. |
Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, Sylvane |
Molecular psychiatry. |
31811260 |
2019 Dec 06; |
| Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets. |
Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony Douglas |
Cell systems. |
31812694 |
2019 12 18; |
| Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. |
Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, Rhonda |
PLoS computational biology. |
31815944 |
2019 12; |
| Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. |
Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortium |
Cerebral cortex (New York, N.Y. : 1991). |
31828294 |
2020 04 14; |
| Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia. |
Vogt, Nicholas M; Hunt, Jack F; Adluru, Nagesh; Dean, Douglas C; Johnson, Sterling C; Asthana, Sanjay; Yu, John-Paul J; Alexander, Andrew L; Bendlin, Barbara B |
Cerebral cortex (New York, N.Y. : 1991) |
31833550 |
2020 05 14 |
| Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems. |
Parag-Sharma, Kshitij; O'Banion, Colin P; Henry, Erin C; Musicant, Adele M; Cleveland, John L; Lawrence, David S; Amelio, Antonio L |
ACS synthetic biology. |
31834783 |
2020 01 17; |
| Leveraging allelic imbalance to refine fine-mapping for eQTL studies. |
Zou, Jennifer; Hormozdiari, Farhad; Jew, Brandon; Castel, Stephane E; Lappalainen, Tuuli; Ernst, Jason; Sul, Jae Hoon; Eskin, Eleazar |
PLoS genetics. |
31834882 |
2019 12; |
| Research Themes and Trends in Ten Top-Ranked Nephrology Journals: A Text Mining Analysis. |
Zengul, Ferhat D; Lee, Timmy; Delen, Dursun; Almehmi, Ammar; Ivankova, Nataliya V; Mehta, Tapan; Topuz, Kazim |
American journal of nephrology. |
31838480 |
2020; |
| Learning High-dimensional Generalized Linear Autoregressive Models. |
Hall, Eric C; Raskutti, Garvesh; Willett, Rebecca M |
IEEE transactions on information theory. |
31839683 |
2019 Apr; |
| Analysis of stimulus-induced brain dynamics during naturalistic paradigms. |
Simony, Erez; Chang, Catie |
NeuroImage. |
31843711 |
2019 Dec 13; |
| Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases. |
Salfati, Elias L; Spencer, Emily G; Topol, Sarah E; Muse, Evan D; Rueda, Manuel; Lucas, Jonathan R; Wagner, Glenn N; Campman, Steven; Topol, Eric J; Torkamani, Ali |
Genome medicine. |
31847883 |
2019 12 17; |
| Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence. |
Robert, Gabriel H; Luo, Qiang; Yu, Tao; Chu, Congying; Ing, Alex; Jia, Tianye; Papadopoulos Orfanos, Dimitri; Burke-Quinlan, Erin; Desrivières, Sylvane; Ruggeri, Barbara; Spechler, Philip; Chaarani, Bader; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Barker, Ted; Garavan, Hugh; Schumann, Gunter; IMAGEN Consortium |
JAMA psychiatry |
31851304 |
2020 04 01 |
| ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest. |
Li, Jiajin; Jew, Brandon; Zhan, Lingyu; Hwang, Sungoo; Coppola, Giovanni; Freimer, Nelson B; Sul, Jae Hoon |
PLoS computational biology. |
31851693 |
2019 Dec; |
| Altered white matter microstructural organization in posttraumatic stress disorder across 3047 adults: results from the PGC-ENIGMA PTSD consortium. |
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Seminars in cancer biology. |
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Nature methods. |
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2020 03 20; |
| ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. |
Thompson, Paul M; Jahanshad, Neda; Ching, Christopher R K; Salminen, Lauren E; Thomopoulos, Sophia I; Bright, Joanna; Baune, Bernhard T; Bertolín, Sara; Bralten, Janita; Bruin, Willem B; Bülow, Robin; Chen, Jian; Chye, Yann; Dannlowski, Udo; de Kovel, Carolien G F; Donohoe, Gary; Eyler, Lisa T; Faraone, Stephen V; Favre, Pauline; Filippi, Courtney A; Frodl, Thomas; Garijo, Daniel; Gil, Yolanda; Grabe, Hans J; Grasby, Katrina L; Hajek, Tomas; Han, Laura K M; Hatton, Sean N; Hilbert, Kevin; Ho, Tiffany C; Holleran, Laurena; Homuth, Georg; Hosten, Norbert; Houenou, Josselin; Ivanov, Iliyan; Jia, Tianye; Kelly, Sinead; Klein, Marieke; Kwon, Jun Soo; Laansma, Max A; Leerssen, Jeanne; Lueken, Ulrike; Nunes, Abraham; Neill, Joseph O'; Opel, Nils; Piras, Fabrizio; Piras, Federica; Postema, Merel C; Pozzi, Elena; Shatokhina, Natalia; Soriano-Mas, Carles; Spalletta, Gianfranco; Sun, Daqiang; Teumer, Alexander; Tilot, Amanda K; Tozzi, Leonardo; van der Merwe, Celia; Van Someren, Eus J W; van Wingen, Guido A; Völzke, Henry; Walton, Esther; Wang, Lei; Winkler, Anderson M; Wittfeld, Katharina; Wright, Margaret J; Yun, Je-Yeon; Zhang, Guohao; Zhang-James, Yanli; Adhikari, Bhim M; Agartz, Ingrid; Aghajani, Moji; Aleman, André; Althoff, Robert R; Altmann, Andre; Andreassen, Ole A; Baron, David A; Bartnik-Olson, Brenda L; Marie Bas-Hoogendam, Janna; Baskin-Sommers, Arielle R; Bearden, Carrie E; Berner, Laura A; Boedhoe, Premika S W; Brouwer, Rachel M; Buitelaar, Jan K; Caeyenberghs, Karen; Cecil, Charlotte A M; Cohen, Ronald A; Cole, James H; Conrod, Patricia J; De Brito, Stephane A; de Zwarte, Sonja M C; Dennis, Emily L; Desrivieres, Sylvane; Dima, Danai; Ehrlich, Stefan; Esopenko, Carrie; Fairchild, Graeme; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Garavan, Hugh P; Glahn, David C; Groenewold, Nynke A; Gurholt, Tiril P; Gutman, Boris A; Hahn, Tim; Harding, Ian H; Hernaus, Dennis; Hibar, Derrek P; Hillary, Frank G; Hoogman, Martine; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Karkashadze, George A; Klapwijk, Eduard T; Knickmeyer, Rebecca C; Kochunov, Peter; Koerte, Inga K; Kong, Xiang-Zhen; Liew, Sook-Lei; Lin, Alexander P; Logue, Mark W; Luders, Eileen; Macciardi, Fabio; Mackey, Scott; Mayer, Andrew R; McDonald, Carrie R; McMahon, Agnes B; Medland, Sarah E; Modinos, Gemma; Morey, Rajendra A; Mueller, Sven C; Mukherjee, Pratik; Namazova-Baranova, Leyla; Nir, Talia M; Olsen, Alexander; Paschou, Peristera; Pine, Daniel S; Pizzagalli, Fabrizio; Rentería, Miguel E; Rohrer, Jonathan D; Sämann, Philipp G; Schmaal, Lianne; Schumann, Gunter; Shiroishi, Mark S; Sisodiya, Sanjay M; Smit, Dirk J A; Sønderby, Ida E; Stein, Dan J; Stein, Jason L; Tahmasian, Masoud; Tate, David F; Turner, Jessica A; van den Heuvel, Odile A; van der Wee, Nic J A; van der Werf, Ysbrand D; van Erp, Theo G M; van Haren, Neeltje E M; van Rooij, Daan; van Velzen, Laura S; Veer, Ilya M; Veltman, Dick J; Villalon-Reina, Julio E; Walter, Henrik; Whelan, Christopher D; Wilde, Elisabeth A; Zarei, Mojtaba; Zelman, Vladimir; ENIGMA Consortium |
Translational psychiatry. |
32198361 |
2020 Mar 20; |
| Subcortical shape alterations in major depressive disorder: Findings from the ENIGMA major depressive disorder working group. |
Ho, Tiffany C; Gutman, Boris; Pozzi, Elena; Grabe, Hans J; Hosten, Norbert; Wittfeld, Katharina; Völzke, Henry; Baune, Bernhard; Dannlowski, Udo; Förster, Katharina; Grotegerd, Dominik; Redlich, Ronny; Jansen, Andreas; Kircher, Tilo; Krug, Axel; Meinert, Susanne; Nenadic, Igor; Opel, Nils; Dinga, Richard; Veltman, Dick J; Schnell, Knut; Veer, Ilya; Walter, Henrik; Gotlib, Ian H; Sacchet, Matthew D; Aleman, André; Groenewold, Nynke A; Stein, Dan J; Li, Meng; Walter, Martin; Ching, Christopher R K; Jahanshad, Neda; Ragothaman, Anjanibhargavi; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Thompson, Paul M; Sämann, Philipp G; Schmaal, Lianne |
Human brain mapping. |
32198905 |
2020 Mar 21; |
| The Relationship Between White Matter Microstructure and General Cognitive Ability in Patients With Schizophrenia and Healthy Participants in the ENIGMA Consortium. |
Holleran, Laurena; Kelly, Sinead; Alloza, Clara; Agartz, Ingrid; Andreassen, Ole A; Arango, Celso; Banaj, Nerisa; Calhoun, Vince; Cannon, Dara; Carr, Vaughan; Corvin, Aiden; Glahn, David C; Gur, Ruben; Hong, Elliot; Hoschl, Cyril; Howells, Fleur M; James, Anthony; Janssen, Joost; Kochunov, Peter; Lawrie, Stephen M; Liu, Jingyu; Martinez, Covadonga; McDonald, Colm; Morris, Derek; Mothersill, David; Pantelis, Christos; Piras, Fabrizio; Potkin, Steven; Rasser, Paul E; Roalf, David; Rowland, Laura; Satterthwaite, Theodore; Schall, Ulrich; Spalletta, Gianfranco; Spaniel, Filip; Stein, Dan J; Uhlmann, Anne; Voineskos, Aristotle; Zalesky, Andrew; van Erp, Theo G M; Turner, Jessica A; Deary, Ian J; Thompson, Paul M; Jahanshad, Neda; Donohoe, Gary |
The American journal of psychiatry |
32212855 |
2020 06 01 |
| Scene Graph Prediction with Limited Labels. |
Chen, Vincent S; Varma, Paroma; Krishna, Ranjay; Bernstein, Michael; Ré, Christopher; Fei-Fei, Li |
Proceedings. IEEE International Conference on Computer Vision. |
32218709 |
2019 Oct-Nov; |
| The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. |
Gonçalves, Rafael S; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A |
The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. |
32219223 |
2017 Oct; |
| Use of social media to assess the impact of equitable state policies on LGBTQ patient experiences: An exploratory study. |
Hswen, Yulin; Zhang, Amanda; Sewalk, Kara; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B |
Healthcare (Amsterdam, Netherlands). |
32241681 |
2020 Jun; |
| Foot strike pattern during running alters muscle-tendon dynamics of the gastrocnemius and the soleus. |
Yong, Jennifer R; Dembia, Christopher L; Silder, Amy; Jackson, Rachel W; Fredericson, Michael; Delp, Scott L |
Scientific reports. |
32245985 |
2020 Apr 03; |
| A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. |
Wagner, Alex H; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Del Vecchio Fitz, Catherine; Pitel, Beth A; Sezerman, Ozman U; Ellrott, Kyle; Warner, Jeremy L; Rieke, Damian T; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I; Schriml, Lynn M; Freimuth, Robert R; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L; Margolin, Adam A; Variant Interpretation for Cancer Consortium |
Nature genetics. |
32246132 |
2020 04; |
| GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. |
Gutiérrez-Sacristán, Alba; De Niz, Carlos; Kothari, Cartik; Kong, Sek Won; Mandl, Kenneth D; Avillach, Paul |
Briefings in bioinformatics |
32249310 |
2021 01 18 |
| Scanner invariant representations for diffusion MRI harmonization. |
Moyer, Daniel; Ver Steeg, Greg; Tax, Chantal M W; Thompson, Paul M |
Magnetic resonance in medicine. |
32250475 |
2020 Apr 06; |
| Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study. |
Tu, Yanshuai; Mi, Liang; Zhang, Wen; Zhang, Haomeng; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative |
Neuroinformatics. |
32253701 |
2020 Apr 06; |
| Hyperbolic Graph Convolutional Neural Networks. |
Chami, Ines; Ying, Rex; Ré, Christopher; Leskovec, Jure |
Advances in neural information processing systems. |
32256024 |
2019 Dec; |
| Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering. |
Kurmukov, Anvar; Mussabaeva, Ayagoz; Denisova, Yulia; Moyer, Daniel; Jahanshad, Neda; Thompson, Paul M; Gutman, Boris A |
Brain connectivity. |
32264696 |
2020 05; |
| GNNExplainer: Generating Explanations for Graph Neural Networks. |
Ying, Rex; Bourgeois, Dylan; You, Jiaxuan; Zitnik, Marinka; Leskovec, Jure |
Advances in neural information processing systems. |
32265580 |
2019 Dec; |
| G2SAT: Learning to Generate SAT Formulas. |
You, Jiaxuan; Wu, Haoze; Barrett, Clark; Ramanujan, Raghuram; Leskovec, Jure |
Advances in neural information processing systems. |
32265581 |
2019 Dec; |
| EIF3H Orchestrates Hippo Pathway-Mediated Oncogenesis via Catalytic Control of YAP Stability. |
Zhou, Zhuan; Zhou, Honghong; Ponzoni, Luca; Luo, Aiping; Zhu, Rui; He, Mingjing; Huang, Yi; Guan, Kun-Liang; Bahar, Ivet; Liu, Zhihua; Wan, Yong |
Cancer research. |
32269044 |
2020 Jun 15; |
| Parity is associated with cognitive function and brain age in both females and males. |
Ning, Kaida; Zhao, Lu; Franklin, Meredith; Matloff, Will; Batta, Ishaan; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W |
Scientific reports |
32269255 |
2020 04 08 |
| Region-specific sex differences in the hippocampus. |
van Eijk, Liza; Hansell, Narelle K; Strike, Lachlan T; Couvy-Duchesne, Baptiste; de Zubicaray, Greig I; Thompson, Paul M; McMahon, Katie L; Zietsch, Brendan P; Wright, Margaret J |
NeuroImage. |
32278894 |
2020 07 15; |
| Automated Classification of Radiographic Knee Osteoarthritis Severity Using Deep Neural Networks. |
Thomas, Kevin A; Kidziński, Łukasz; Halilaj, Eni; Fleming, Scott L; Venkataraman, Guhan R; Oei, Edwin H G; Gold, Garry E; Delp, Scott L |
Radiology. Artificial intelligence |
32280948 |
2020 Mar 18 |
| A structured model for immune exposures. |
Vita, Randi; Overton, James A; Dunn, Patrick; Cheung, Kei-Hoi; Kleinstein, Steven H; Sette, Alessandro; Peters, Bjoern |
Database : the journal of biological databases and curation |
32283555 |
2020 01 01 |
| ENIGMA-DTI: Translating reproducible white matter deficits into personalized vulnerability metrics in cross-diagnostic psychiatric research. |
Kochunov, Peter; Hong, L Elliot; Dennis, Emily L; Morey, Rajendra A; Tate, David F; Wilde, Elisabeth A; Logue, Mark; Kelly, Sinead; Donohoe, Gary; Favre, Pauline; Houenou, Josselin; Ching, Christopher R K; Holleran, Laurena; Andreassen, Ole A; van Velzen, Laura S; Schmaal, Lianne; Villalón-Reina, Julio E; Bearden, Carrie E; Piras, Fabrizio; Spalletta, Gianfranco; van den Heuvel, Odile A; Veltman, Dick J; Stein, Dan J; Ryan, Meghann C; Tan, Yunlong; van Erp, Theo G M; Turner, Jessica A; Haddad, Liz; Nir, Talia M; Glahn, David C; Thompson, Paul M; Jahanshad, Neda |
Human brain mapping |
32301246 |
2022 Jan |
| Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. |
Adekkanattu, Prakash; Jiang, Guoqian; Luo, Yuan; Kingsbury, Paul R; Xu, Zhenxing; Rasmussen, Luke V; Pacheco, Jennifer A; Kiefer, Richard C; Stone, Daniel J; Brandt, Pascal S; Yao, Liang; Zhong, Yizhen; Deng, Yu; Wang, Fei; Ancker, Jessica S; Campion, Thomas R; Pathak, Jyotishman |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
32308812 |
2019; |
| Comparison of Smart Contract Blockchains for Healthcare Applications. |
Yu, Hongru; Sun, Haiyang; Wu, Danyi; Kuo, Tsung-Ting |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
32308924 |
2019 |
| The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain-behavior relationships after stroke. |
Liew, Sook-Lei; Zavaliangos-Petropulu, Artemis; Jahanshad, Neda; Lang, Catherine E; Hayward, Kathryn S; Lohse, Keith R; Juliano, Julia M; Assogna, Francesca; Baugh, Lee A; Bhattacharya, Anup K; Bigjahan, Bavrina; Borich, Michael R; Boyd, Lara A; Brodtmann, Amy; Buetefisch, Cathrin M; Byblow, Winston D; Cassidy, Jessica M; Conforto, Adriana B; Craddock, R Cameron; Dimyan, Michael A; Dula, Adrienne N; Ermer, Elsa; Etherton, Mark R; Fercho, Kelene A; Gregory, Chris M; Hadidchi, Shahram; Holguin, Jess A; Hwang, Darryl H; Jung, Simon; Kautz, Steven A; Khlif, Mohamed Salah; Khoshab, Nima; Kim, Bokkyu; Kim, Hosung; Kuceyeski, Amy; Lotze, Martin; MacIntosh, Bradley J; Margetis, John L; Mohamed, Feroze B; Piras, Fabrizio; Ramos-Murguialday, Ander; Richard, Geneviève; Roberts, Pamela; Robertson, Andrew D; Rondina, Jane M; Rost, Natalia S; Sanossian, Nerses; Schweighofer, Nicolas; Seo, Na Jin; Shiroishi, Mark S; Soekadar, Surjo R; Spalletta, Gianfranco; Stinear, Cathy M; Suri, Anisha; Tang, Wai Kwong W; Thielman, Gregory T; Vecchio, Daniela; Villringer, Arno; Ward, Nick S; Werden, Emilio; Westlye, Lars T; Winstein, Carolee; Wittenberg, George F; Wong, Kristin A; Yu, Chunshui; Cramer, Steven C; Thompson, Paul M |
Human brain mapping |
32310331 |
2022 Jan |
| Neurobehavioural characterisation and stratification of reinforcement-related behaviour. |
Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Luo, Qiang; Francesca, Biondo; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Feng, Jianfeng; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium |
Nature human behaviour. |
32313235 |
2020 05; |
| Efficient Relative Attribute Learning using Graph Neural Networks. |
Meng, Zihang; Adluru, Nagesh; Kim, Hyunwoo J; Fung, Glenn; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. |
32318687 |
2018 Sep; |
| From a deep learning model back to the brain-Identifying regional predictors and their relation to aging. |
Levakov, Gidon; Rosenthal, Gideon; Shelef, Ilan; Raviv, Tammy Riklin; Avidan, Galia |
Human brain mapping. |
32320123 |
2020 Aug 15; |
| The turning and barrier course reveals gait parameters for detecting freezing of gait and measuring the efficacy of deep brain stimulation. |
O'Day, Johanna; Syrkin-Nikolau, Judy; Anidi, Chioma; Kidzinski, Lukasz; Delp, Scott; Bronte-Stewart, Helen |
PloS one. |
32348346 |
2020; |
| Riemannian Variance Filtering: An Independent Filtering Scheme for Statistical Tests on Manifold-valued Data. |
Zheng, Ligang; Kim, Hyunwoo J; Adluru, Nagesh; Newton, Michael A; Singh, Vikas |
Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. |
32355573 |
2017 Jul; |
| QSAR without borders. |
Muratov, Eugene N; Bajorath, Jürgen; Sheridan, Robert P; Tetko, Igor V; Filimonov, Dmitry; Poroikov, Vladimir; Oprea, Tudor I; Baskin, Igor I; Varnek, Alexandre; Roitberg, Adrian; Isayev, Olexandr; Curtarolo, Stefano; Fourches, Denis; Cohen, Yoram; Aspuru-Guzik, Alan; Winkler, David A; Agrafiotis, Dimitris; Cherkasov, Artem; Tropsha, Alexander |
Chemical Society reviews |
32356548 |
2020 06 07 |
| Engaging citizen scientists to build healthy park environments in Colombia. |
Rubio, María Alejandra; Triana, Camilo; King, Abby C; Rosas, Lisa G; Banchoff, Ann W; Rubiano, Oscar; Chrisinger, Benjamin W; Sarmiento, Olga L |
Health promotion international |
32361761 |
2021 Mar 12 |
| EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. |
Kuo, Tsung-Ting; Gabriel, Rodney A; Cidambi, Krishna R; Ohno-Machado, Lucila |
Journal of the American Medical Informatics Association : JAMIA. |
32364235 |
2020 May 01; |
| Goal-setting And Achievement In Activity Tracking Apps: A Case Study Of MyFitnessPal. |
Gordon, Mitchell L; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
32368761 |
2019 May; |
| Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR. |
Sinha, Ishan; Aluthge, Dilum P; Chen, Elizabeth S; Sarkar, Indra Neil; Ahn, Sun Ho |
Journal of vascular and interventional radiology : JVIR |
32376173 |
2020 06 |
| Sampling-free Uncertainty Estimation in Gated Recurrent Units with Applications to Normative Modeling in Neuroimaging. |
Hwang, Seong Jae; Mehta, Ronak R; Kim, Hyunwoo J; Johnson, Sterling C; Singh, Vikas |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
32405271 |
2019 Jul; |
| Dilated Convolutional Neural Networks for Sequential Manifold-valued Data. |
Zhen, Xingjian; Chakraborty, Rudrasis; Vogt, Nicholas; Bendlin, Barbara B; Singh, Vikas |
Proceedings. IEEE International Conference on Computer Vision. |
32405275 |
2019 Oct-Nov; |
| Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples with Applications to Neuroimaging. |
Hwang, Seong Jae; Tao, Zirui; Kim, Won Hwa; Singh, Vikas |
Proceedings. IEEE International Conference on Computer Vision. |
32405276 |
2019 Oct-Nov; |
| A Natural Language Interface for Dissemination of Reproducible Biomedical Data Science. |
John, Rogers Jeffrey Leo; Patel, Jignesh M; Alexander, Andrew L; Singh, Vikas; Adluru, Nagesh |
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. |
32412016 |
2018 Sep; |
| Mapping brain asymmetry in health and disease through the ENIGMA consortium. |
Kong, Xiang-Zhen; Postema, Merel C; Guadalupe, Tulio; de Kovel, Carolien; Boedhoe, Premika S W; Hoogman, Martine; Mathias, Samuel R; van Rooij, Daan; Schijven, Dick; Glahn, David C; Medland, Sarah E; Jahanshad, Neda; Thomopoulos, Sophia I; Turner, Jessica A; Buitelaar, Jan; van Erp, Theo G M; Franke, Barbara; Fisher, Simon E; van den Heuvel, Odile A; Schmaal, Lianne; Thompson, Paul M; Francks, Clyde |
Human brain mapping |
32420672 |
2022 Jan |
| Consortium neuroscience of attention deficit/hyperactivity disorder and autism spectrum disorder: The ENIGMA adventure. |
Hoogman, Martine; van Rooij, Daan; Klein, Marieke; Boedhoe, Premika; Ilioska, Iva; Li, Ting; Patel, Yash; Postema, Merel C; Zhang-James, Yanli; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Banaschewski, Tobias; Bau, Claiton H D; Behrmann, Marlene; Bellgrove, Mark A; Brandeis, Daniel; Brem, Silvia; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Castellanos, Francisco X; Coghill, David; Conzelmann, Annette; Daly, Eileen; Deruelle, Christine; Dinstein, Ilan; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Epstein, Jeffery N; Fair, Damien A; Fitzgerald, Jacqueline; Freitag, Christine M; Frodl, Thomas; Gallagher, Louise; Grevet, Eugenio H; Haavik, Jan; Hoekstra, Pieter J; Janssen, Joost; Karkashadze, Georgii; King, Joseph A; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lerch, Jason P; Lesch, Klaus-Peter; Louza, Mario R; Luna, Beatriz; Mattos, Paulo; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh; Nigg, Joel T; Oberwelland-Weiss, Eileen; O'Gorman Tuura, Ruth L; O'Hearn, Kirsten; Oosterlaan, Jaap; Parellada, Mara; Pauli, Paul; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Retico, Alessandra; Rosa, Pedro G P; Rubia, Katya; Shaw, Philip; Silk, Tim J; Tamm, Leanne; Vilarroya, Oscar; Walitza, Susanne; Jahanshad, Neda; Faraone, Stephen V; Francks, Clyde; van den Heuvel, Odile A; Paus, Tomas; Thompson, Paul M; Buitelaar, Jan K; Franke, Barbara |
Human brain mapping. |
32420680 |
2020 May 18; |
| Brain aging in major depressive disorder: results from the ENIGMA major depressive disorder working group. |
Han, Laura K M; Dinga, Richard; Hahn, Tim; Ching, Christopher R K; Eyler, Lisa T; Aftanas, Lyubomir; Aghajani, Moji; Aleman, André; Baune, Bernhard T; Berger, Klaus; Brak, Ivan; Filho, Geraldo Busatto; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Duran, Fabio L S; Enneking, Verena; Filimonova, Elena; Frenzel, Stefan; Frodl, Thomas; Fu, Cynthia H Y; Godlewska, Beata R; Gotlib, Ian H; Grabe, Hans J; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Hall, Geoffrey B; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Hosten, Norbert; Jansen, Andreas; Kähler, Claas; Kircher, Tilo; Klimes-Dougan, Bonnie; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leenings, Ramona; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew; McLellan, Quinn; McMahon, Katie L; Medland, Sarah E; Mueller, Bryon A; Mwangi, Benson; Osipov, Evgeny; Portella, Maria J; Pozzi, Elena; Reneman, Liesbeth; Repple, Jonathan; Rosa, Pedro G P; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Schrantee, Anouk; Simulionyte, Egle; Soares, Jair C; Sommer, Jens; Stein, Dan J; Steinsträter, Olaf; Strike, Lachlan T; Thomopoulos, Sophia I; van Tol, Marie-José; Veer, Ilya M; Vermeiren, Robert R J M; Walter, Henrik; van der Wee, Nic J A; van der Werff, Steven J A; Whalley, Heather; Winter, Nils R; Wittfeld, Katharina; Wright, Margaret J; Wu, Mon-Ju; Völzke, Henry; Yang, Tony T; Zannias, Vasileios; de Zubicaray, Greig I; Zunta-Soares, Giovana B; Abé, Christoph; Alda, Martin; Andreassen, Ole A; Bøen, Erlend; Bonnin, Caterina M; Canales-Rodriguez, Erick J; Cannon, Dara; Caseras, Xavier; Chaim-Avancini, Tiffany M; Elvsåshagen, Torbjørn; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Goikolea, Jose M; Haarman, Bartholomeus C M; Hajek, Tomas; Henry, Chantal; Houenou, Josselin; Howells, Fleur M; Ingvar, Martin; Kuplicki, Rayus; Lafer, Beny; Landén, Mikael; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Nabulsi, Leila; Otaduy, Maria Concepcion Garcia; Overs, Bronwyn J; Polosan, Mircea; Pomarol-Clotet, Edith; Radua, Joaquim; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Savitz, Jonathan; Schene, Aart H; Schofield, Peter R; Serpa, Mauricio H; Sim, Kang; Soeiro-de-Souza, Marcio Gerhardt; Sutherland, Ashley N; Temmingh, Henk S; Timmons, Garrett M; Uhlmann, Anne; Vieta, Eduard; Wolf, Daniel H; Zanetti, Marcus V; Jahanshad, Neda; Thompson, Paul M; Veltman, Dick J; Penninx, Brenda W J H; Marquand, Andre F; Cole, James H; Schmaal, Lianne |
Molecular psychiatry |
32424236 |
2021 Sep |
| Machine learning on drug-specific data to predict small molecule teratogenicity. |
Challa, Anup P; Beam, Andrew L; Shen, Min; Peryea, Tyler; Lavieri, Robert R; Lippmann, Ethan S; Aronoff, David M |
Reproductive toxicology (Elmsford, N.Y.). |
32428651 |
2020 Aug; |
| Cognitive and brain development is independently influenced by socioeconomic status and polygenic scores for educational attainment. |
Judd, Nicholas; Sauce, Bruno; Wiedenhoeft, John; Tromp, Jeshua; Chaarani, Bader; Schliep, Alexander; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Klingberg, Torkel |
Proceedings of the National Academy of Sciences of the United States of America. |
32430323 |
2020 06 02; |
| Linked patterns of biological and environmental covariation with brain structure in adolescence: a population-based longitudinal study. |
Modabbernia, Amirhossein; Reichenberg, Abraham; Ing, Alex; Moser, Dominik A; Doucet, Gaelle E; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth J; Becker, Andreas; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Garavan, Hugh; Gowland, Penny; Grigis, Antoine; Grimmer, Yvonne; Heinz, Andreas; Insensee, Corinna; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Millenet, Sabina; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Penttilä, Jani; Poustka, Luise; Smolka, Michael N; Stringaris, Argyris; van Noort, Betteke M; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Frangou, Sophia; IMAGEN Consortium |
Molecular psychiatry |
32444868 |
2020 May 22 |
| Pangenome Graphs. |
Eizenga, Jordan M; Novak, Adam M; Sibbesen, Jonas A; Heumos, Simon; Ghaffaari, Ali; Hickey, Glenn; Chang, Xian; Seaman, Josiah D; Rounthwaite, Robin; Ebler, Jana; Rautiainen, Mikko; Garg, Shilpa; Paten, Benedict; Marschall, Tobias; Sirén, Jouni; Garrison, Erik |
Annual review of genomics and human genetics |
32453966 |
2020 08 31 |
| An Assessment of Environmental Health Measures in the Deepwater Horizon Research Consortia. |
Pan, Huaqin; Edwards, Stephen W; Ives, Cataia; Covert, Hannah; Harville, Emily W; Lichtveld, Maureen Y; Wickliffe, Jeffrey K; Hamilton, Carol M |
Current opinion in toxicology. |
32457927 |
2019 Aug; |
| Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes. |
Wang, Qingbo; Pierce-Hoffman, Emma; Cummings, Beryl B; Alföldi, Jessica; Francioli, Laurent C; Gauthier, Laura D; Hill, Andrew J; O'Donnell-Luria, Anne H; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Karczewski, Konrad J; MacArthur, Daniel G |
Nature communications. |
32461613 |
2020 05 27; |
| Characterising the loss-of-function impact of 5' untranslated region variants in 15,708 individuals. |
Whiffin, Nicola; Karczewski, Konrad J; Zhang, Xiaolei; Chothani, Sonia; Smith, Miriam J; Evans, D Gareth; Roberts, Angharad M; Quaife, Nicholas M; Schafer, Sebastian; Rackham, Owen; Alföldi, Jessica; O'Donnell-Luria, Anne H; Francioli, Laurent C; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Cook, Stuart A; Barton, Paul J R; MacArthur, Daniel G; Ware, James S |
Nature communications. |
32461616 |
2020 05 27; |
| Evaluating drug targets through human loss-of-function genetic variation. |
Minikel, Eric Vallabh; Karczewski, Konrad J; Martin, Hilary C; Cummings, Beryl B; Whiffin, Nicola; Rhodes, Daniel; Alföldi, Jessica; Trembath, Richard C; van Heel, David A; Daly, Mark J; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Schreiber, Stuart L; MacArthur, Daniel G |
Nature. |
32461653 |
2020 05; |
| The mutational constraint spectrum quantified from variation in 141,456 humans. |
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Nature. |
32461654 |
2020 05; |
| Transcript expression-aware annotation improves rare variant interpretation. |
Cummings, Beryl B; Karczewski, Konrad J; Kosmicki, Jack A; Seaby, Eleanor G; Watts, Nicholas A; Singer-Berk, Moriel; Mudge, Jonathan M; Karjalainen, Juha; Satterstrom, F Kyle; O'Donnell-Luria, Anne H; Poterba, Timothy; Seed, Cotton; Solomonson, Matthew; Alföldi, Jessica; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Daly, Mark J; MacArthur, Daniel G |
Nature. |
32461655 |
2020 May; |
| The effect of LRRK2 loss-of-function variants in humans. |
Whiffin, Nicola; Armean, Irina M; Kleinman, Aaron; Marshall, Jamie L; Minikel, Eric V; Goodrich, Julia K; Quaife, Nicholas M; Cole, Joanne B; Wang, Qingbo; Karczewski, Konrad J; Cummings, Beryl B; Francioli, Laurent; Laricchia, Kristen; Guan, Anna; Alipanahi, Babak; Morrison, Peter; Baptista, Marco A S; Merchant, Kalpana M; Genome Aggregation Database Production Team; Genome Aggregation Database Consortium; Ware, James S; Havulinna, Aki S; Iliadou, Bozenna; Lee, Jung-Jin; Nadkarni, Girish N; Whiteman, Cole; 23andMe Research Team; Daly, Mark; Esko, Tõnu; Hultman, Christina; Loos, Ruth J F; Milani, Lili; Palotie, Aarno; Pato, Carlos; Pato, Michele; Saleheen, Danish; Sullivan, Patrick F; Alföldi, Jessica; Cannon, Paul; MacArthur, Daniel G |
Nature medicine. |
32461697 |
2020 Jun; |
| Brain structural abnormalities in obesity: relation to age, genetic risk, and common psychiatric disorders : Evidence through univariate and multivariate mega-analysis including 6420 participants from the ENIGMA MDD working group. |
Opel, Nils; Thalamuthu, Anbupalam; Milaneschi, Yuri; Grotegerd, Dominik; Flint, Claas; Leenings, Ramona; Goltermann, Janik; Richter, Maike; Hahn, Tim; Woditsch, Georg; Berger, Klaus; Hermesdorf, Marco; McIntosh, Andrew; Whalley, Heather C; Harris, Mathew A; MacMaster, Frank P; Walter, Henrik; Veer, Ilya M; Frodl, Thomas; Carballedo, Angela; Krug, Axel; Nenadic, Igor; Kircher, Tilo; Aleman, Andre; Groenewold, Nynke A; Stein, Dan J; Soares, Jair C; Zunta-Soares, Giovana B; Mwangi, Benson; Wu, Mon-Ju; Walter, Martin; Li, Meng; Harrison, Ben J; Davey, Christopher G; Cullen, Kathryn R; Klimes-Dougan, Bonnie; Mueller, Bryon A; Sämann, Philipp G; Penninx, Brenda; Nawijn, Laura; Veltman, Dick J; Aftanas, Lyubomir; Brak, Ivan V; Filimonova, Elena A; Osipov, Evgeniy A; Reneman, Liesbeth; Schrantee, Anouk; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Hosten, Norbert; Völzke, Henry; Sim, Kang; Gotlib, Ian H; Sacchet, Matthew D; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian; Pozzi, Elena; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Baune, Bernhard T; Dannlowski, Udo |
Molecular psychiatry |
32467648 |
2021 Sep |
| The ENIGMA-Epilepsy working group: Mapping disease from large data sets. |
Sisodiya, Sanjay M; Whelan, Christopher D; Hatton, Sean N; Huynh, Khoa; Altmann, Andre; Ryten, Mina; Vezzani, Annamaria; Caligiuri, Maria Eugenia; Labate, Angelo; Gambardella, Antonio; Ives-Deliperi, Victoria; Meletti, Stefano; Munsell, Brent C; Bonilha, Leonardo; Tondelli, Manuela; Rebsamen, Michael; Rummel, Christian; Vaudano, Anna Elisabetta; Wiest, Roland; Balachandra, Akshara R; Bargalló, Núria; Bartolini, Emanuele; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris; Caldairou, Benoit; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Desmond, Patricia M; Domin, Martin; Duncan, John S; Focke, Niels K; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kowalczyk, Magdalena A; Kreilkamp, Barbara A K; Kwan, Patrick; Lariviere, Sara; Lenge, Matteo; Lopez, Seymour M; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; Pardoe, Heath R; Pariente, Jose C; Raviteja, Kotikalapudi; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Seeck, Margitta; Semmelroch, Mira K H G; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Stein, Dan J; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Thomopoulos, Sophia I; Velakoulis, Dennis; Vivash, Lucy; Weber, Bernd; Yasuda, Clarissa Lin; Zhang, Junsong; Thompson, Paul M; McDonald, Carrie R; ENIGMA Consortium Epilepsy Working Group |
Human brain mapping. |
32468614 |
2020 May 29; |
| Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. |
Radua, Joaquim; Vieta, Eduard; Shinohara, Russell; Kochunov, Peter; Quidé, Yann; Green, Melissa J; Weickert, Cynthia S; Weickert, Thomas; Bruggemann, Jason; Kircher, Tilo; Nenadi?, Igor; Cairns, Murray J; Seal, Marc; Schall, Ulrich; Henskens, Frans; Fullerton, Janice M; Mowry, Bryan; Pantelis, Christos; Lenroot, Rhoshel; Cropley, Vanessa; Loughland, Carmel; Scott, Rodney; Wolf, Daniel; Satterthwaite, Theodore D; Tan, Yunlong; Sim, Kang; Piras, Fabrizio; Spalletta, Gianfranco; Banaj, Nerisa; Pomarol-Clotet, Edith; Solanes, Aleix; Albajes-Eizagirre, Anton; Canales-Rodríguez, Erick J; Sarro, Salvador; Di Giorgio, Annabella; Bertolino, Alessandro; Stäblein, Michael; Oertel, Viola; Knöchel, Christian; Borgwardt, Stefan; du Plessis, Stefan; Yun, Je-Yeon; Kwon, Jun Soo; Dannlowski, Udo; Hahn, Tim; Grotegerd, Dominik; Alloza, Clara; Arango, Celso; Janssen, Joost; Díaz-Caneja, Covadonga; Jiang, Wenhao; Calhoun, Vince; Ehrlich, Stefan; Yang, Kun; Cascella, Nicola G; Takayanagi, Yoichiro; Sawa, Akira; Tomyshev, Alexander; Lebedeva, Irina; Kaleda, Vasily; Kirschner, Matthias; Hoschl, Cyril; Tomecek, David; Skoch, Antonin; van Amelsvoort, Therese; Bakker, Geor; James, Anthony; Preda, Adrian; Weideman, Andrea; Stein, Dan J; Howells, Fleur; Uhlmann, Anne; Temmingh, Henk; López-Jaramillo, Carlos; Díaz-Zuluaga, Ana; Fortea, Lydia; Martinez-Heras, Eloy; Solana, Elisabeth; Llufriu, Sara; Jahanshad, Neda; Thompson, Paul; Turner, Jessica; van Erp, Theo; ENIGMA Consortium collaborators |
NeuroImage. |
32470572 |
2020 Sep; |
| ENIGMA MDD: seven years of global neuroimaging studies of major depression through worldwide data sharing. |
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Translational psychiatry. |
32472038 |
2020 May 29; |
| ENIGMA brain injury: Framework, challenges, and opportunities. |
Dennis, Emily L; Baron, David; Bartnik-Olson, Brenda; Caeyenberghs, Karen; Esopenko, Carrie; Hillary, Frank G; Kenney, Kimbra; Koerte, Inga K; Lin, Alexander P; Mayer, Andrew R; Mondello, Stefania; Olsen, Alexander; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A |
Human brain mapping |
32476212 |
2022 Jan |
| Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort. |
Zong, Nansu; Sharma, Deepak K; Yu, Yue; Egan, Jan B; Davila, Jaime I; Wang, Chen; Jiang, Guoqian |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
32477698 |
2020; |
| Cross-sectional and longitudinal associations of family income-to-needs ratio with cortical and subcortical brain volume in adolescent boys and girls. |
King, Lucy S; Dennis, Emily L; Humphreys, Kathryn L; Thompson, Paul M; Gotlib, Ian H |
Developmental cognitive neuroscience. |
32479375 |
2020 May 18; |
| Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines. |
Argimón, Silvia; Masim, Melissa A L; Gayeta, June M; Lagrada, Marietta L; Macaranas, Polle K V; Cohen, Victoria; Limas, Marilyn T; Espiritu, Holly O; Palarca, Janziel C; Chilam, Jeremiah; Jamoralin Jr, Manuel C; Villamin, Alfred S; Borlasa, Janice B; Olorosa, Agnettah M; Hernandez, Lara F T; Boehme, Karis D; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M; Sia, Sonia B; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C |
Nature communications. |
32483195 |
2020 Jun 01; |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks. |
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Nature methods. |
32483333 |
2020 07; |
| The effects of motor modularity on performance, learning and generalizability in upper-extremity reaching: a computational analysis. |
Al Borno, Mazen; Hicks, Jennifer L; Delp, Scott L |
Journal of the Royal Society, Interface. |
32486950 |
2020 06; |
| Using Ethereum blockchain to store and query pharmacogenomics data via smart contracts. |
Gürsoy, Gamze; Brannon, Charlotte M; Gerstein, Mark |
BMC medical genomics. |
32487214 |
2020 06 01; |
| Distributed Regression Analysis Application in Large Distributed Data Networks: Analysis of Precision and Operational Performance. |
Her, Qoua; Malenfant, Jessica; Zhang, Zilu; Vilk, Yury; Young, Jessica; Tabano, David; Hamilton, Jack; Johnson, Ron; Raebel, Marsha; Boudreau, Denise; Toh, Sengwee |
JMIR medical informatics. |
32496200 |
2020 Jun 04; |
| Pre-operative gastrocnemius lengths in gait predict outcomes following gastrocnemius lengthening surgery in children with cerebral palsy. |
Rajagopal, Apoorva; Kidzi?ski, ?ukasz; McGlaughlin, Alec S; Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H |
PloS one. |
32502157 |
2020; |
| Reversal of Infected Host Gene Expression Identifies Repurposed Drug Candidates for COVID-19. |
Xing, Jing; Shankar, Rama; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Dexheimer, Thomas; Rajasekaran, Surender; Tseng, Chien-Te Kent; Chen, Bin |
bioRxiv : the preprint server for biology. |
32511305 |
2020 Apr 09; |
| A geometric framework for statistical analysis of trajectories with distinct temporal spans. |
Chakraborty, Rudrasis; Singh, Vikas; Adluru, Nagesh; Vemuri, Baba C |
Proceedings. IEEE International Conference on Computer Vision. |
32514257 |
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| Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities. |
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Stroke. |
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2020 Jul; |
| Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs. |
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Infection control and hospital epidemiology |
32519624 |
2020 09 |
| Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold. |
Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S |
Journal of medicinal chemistry |
32530623 |
2020 07 23 |
| SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. |
Chen, Fan; Kele?, Sündüz |
Genome biology. |
32532357 |
2020 06 12; |
| Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups. |
Boedhoe, Premika S W (see original citation for additional authors) |
The American journal of psychiatry |
32539527 |
2020 09 01 |
| Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis. |
Chen, Poshen B; Black, Audrey S; Sobel, Adam L; Zhao, Yannan; Mukherjee, Purba; Molparia, Bhuvan; Moore, Nina E; Aleman Muench, German R; Wu, Jiejun; Chen, Weixuan; Pinto, Antonio F M; Maryanoff, Bruce E; Saghatelian, Alan; Soroosh, Pejman; Torkamani, Ali; Leman, Luke J; Ghadiri, M Reza |
Nature biotechnology. |
32541956 |
2020 Jun 15; |
| Wearable microPosters. |
Lee, James; Sternberg, Paul |
microPublication biology. |
32550402 |
2019 Nov 26; |
| Surveillance of antimicrobial resistance and evolving microbial populations in Vermont: 2011-2018. |
Stelling, John; Read, Jennifer S; Fritch, William; O'Brien, Thomas F; Peters, Rob; Clark, Adam; Bokhari, Marissa; Lion, Mattia; Katwa, Parisha; Kelso, Patsy |
Expert review of anti-infective therapy. |
32552054 |
2020 Oct; |
| Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial resistance. |
Kajihara, Toshiki; Yahara, Koji; Stelling, John; Eremin, Sergey Romualdovich; Tornimbene, Barbara; Thamlikitkul, Visanu; Hirabayashi, Aki; Anzai, Eiko; Wakai, Satoyo; Matsunaga, Nobuaki; Hayakawa, Kayoko; Ohmagari, Norio; Sugai, Motoyuki; Shibayama, Keigo |
PloS one. |
32589639 |
2020; |
| Mega-analysis methods in ENIGMA: The experience of the generalized anxiety disorder working group. |
Zugman, André; Harrewijn, Anita; Cardinale, Elise M; Zwiebel, Hannah; Freitag, Gabrielle F; Werwath, Katy E; Bas-Hoogendam, Janna M; Groenewold, Nynke A; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed; Burkhouse, Katie; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Thomopoulos, Sophia I; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Nielsen, Jared A; Buckner, Randy; Smoller, Jordan W; Mwangi, Benson; Soares, Jair C; Wu, Mon-Ju; Zunta-Soares, Giovana B; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca; Manfro, Gisele G; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kosti?, Milutin; Munjiza, Ana; Filippi, Courtney A; Leibenluft, Ellen; Alberton, Bianca A V; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Yu, Qiongru; Sylvester, Chad M; Veltman, Dick J; Lueken, Ulrike; Van der Wee, Nic J A; Stein, Dan J; Jahanshad, Neda; Thompson, Paul M; Pine, Daniel S; Winkler, Anderson M |
Human brain mapping. |
32596977 |
2020 Jun 29; |
| Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts. |
Ding, Hongxu; Bailey, Andrew D; Jain, Miten; Olsen, Hugh; Paten, Benedict |
Bioinformatics (Oxford, England). |
32597959 |
2020 Dec 08; |
| The IMAGEN study: a decade of imaging genetics in adolescents. |
Mascarell Mari?i?, Lea; Walter, Henrik; Rosenthal, Annika; Ripke, Stephan; Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Itterman, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Whelan, Robert; Kaminski, Jakob; Schumann, Gunter; Heinz, Andreas; IMAGEN consortium |
Molecular psychiatry. |
32601453 |
2020 Nov; |
| COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database. |
Korn, Daniel; Bobrowski, Tesia; Li, Michael; Kebede, Yaphet; Wang, Patrick; Owen, Phillips; Vaidya, Gaurav; Muratov, Eugene; Chirkova, Rada; Bizon, Chris; Tropsha, Alexander |
ChemRxiv : the preprint server for chemistry. |
32601612 |
2020 Jun 18; |
| Physiological changes in sleep that affect fMRI inference. |
Duyn, Jeff H; Ozbay, Pinar S; Chang, Catie; Picchioni, Dante |
Current opinion in behavioral sciences. |
32613032 |
2020 Jun; |
| ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders. |
Bas-Hoogendam, Janna Marie; Groenewold, Nynke A; Aghajani, Moji; Freitag, Gabrielle F; Harrewijn, Anita; Hilbert, Kevin; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Veltman, Dick J; Winkler, Anderson M; Lueken, Ulrike; Pine, Daniel S; van der Wee, Nic J A; Stein, Dan J |
Human brain mapping. |
32618421 |
2020 Jul 03; |
| Discovery of Synergistic and Antagonistic Drug Combinations against SARS-CoV-2 In Vitro. |
Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N |
bioRxiv : the preprint server for biology. |
32637956 |
2020 Jun 30; |
| Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature. |
Emad, Amin; Ray, Tania; Jensen, Tor W; Parat, Meera; Natrajan, Rachael; Sinha, Saurabh; Ray, Partha S |
Breast cancer research : BCR. |
32641077 |
2020 Jul 08; |
| How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross-disorder meta-analytic comparison using the ENIGMA consortium findings. |
Navarri, Xavier; Afzali, Mohammad H; Lavoie, Jacob; Sinha, Rajita; Stein, Dan J; Momenan, Reza; Veltman, Dick J; Korucuoglu, Ozlem; Sjoerds, Zsuzsika; van Holst, Ruth J; Hester, Rob; Orr, Catherine; Cousijn, Janna; Yucel, Murat; Lorenzetti, Valentina; Wiers, Reinout; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Mackey, Scott; Conrod, Patricia J |
Human brain mapping |
32643841 |
2022 Jan |
| Disruption and Compensation of Sulcation-based Covariance Networks in Neonatal Brain Growth after Perinatal Injury. |
Kim, Sharon Y; Liu, Mengting; Hong, Seok-Jun; Toga, Arthur W; Barkovich, A James; Xu, Duan; Kim, Hosung |
Cerebral cortex (New York, N.Y. : 1991) |
32656563 |
2020 11 03 |
| Privacy-preserving construction of generalized linear mixed model for biomedical computation. |
Zhu, Rui; Jiang, Chao; Wang, Xiaofeng; Wang, Shuang; Zheng, Hao; Tang, Haixu |
Bioinformatics (Oxford, England). |
32657380 |
2020 Jul 01; |
| Testing the effectiveness of physical activity advice delivered via text messaging vs. human phone advisors in a Latino population: The On The Move randomized controlled trial design and methods. |
King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Espinosa, Patricia Rodriguez; Garcia, Dulce; Hauser, Michelle; Done, Monica; Patel, Michele L; Parikh, Nina M; Corral, Cecilia; Ahn, David K |
Contemporary clinical trials |
32659437 |
2020 08 |
| Telomere-to-telomere assembly of a complete human X chromosome. |
Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; |
Nature. |
32663838 |
2020 09; |
| Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks. |
Uttam, Shikhar; Stern, Andrew M; Sevinsky, Christopher J; Furman, Samantha; Pullara, Filippo; Spagnolo, Daniel; Nguyen, Luong; Gough, Albert; Ginty, Fiona; Lansing Taylor, D; Chakra Chennubhotla, S |
Nature communications. |
32665557 |
2020 07 14; |
| Age and morphology of posterior communicating artery aneurysms. |
Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Scientific reports. |
32665589 |
2020 Jul 14; |
| Pred-Skin: A Web Portal for Accurate Prediction of Human Skin Sensitizers. |
Borba, Joyce V B; Braga, Rodolpho C; Alves, Vinicius M; Muratov, Eugene N; Kleinstreuer, Nicole; Tropsha, Alexander; Andrade, Carolina Horta |
Chemical research in toxicology |
32673477 |
2021 02 15 |
| SCAM Detective: Accurate Predictor of Small, Colloidally Aggregating Molecules. |
Alves, Vinicius M; Capuzzi, Stephen J; Braga, Rodolpho C; Korn, Daniel; Hochuli, Joshua E; Bowler, Kyle H; Yasgar, Adam; Rai, Ganesha; Simeonov, Anton; Muratov, Eugene N; Zakharov, Alexey V; Tropsha, Alexander |
Journal of chemical information and modeling |
32678597 |
2020 08 24 |
| Learning from history: do not flatten the curve of antiviral research! |
Bobrowski, Tesia; Melo-Filho, Cleber C; Korn, Daniel; Alves, Vinicius M; Popov, Konstantin I; Auerbach, Scott; Schmitt, Charles; Moorman, Nathaniel J; Muratov, Eugene N; Tropsha, Alexander |
Drug discovery today. |
32679173 |
2020 Jul 15; |
| Applying surface-based morphometry to study ventricular abnormalities of cognitively unimpaired subjects prior to clinically significant memory decline. |
Dong, Qunxi; Zhang, Wen; Stonnington, Cynthia M; Wu, Jianfeng; Gutman, Boris A; Chen, Kewei; Su, Yi; Baxter, Leslie C; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin |
NeuroImage. Clinical. |
32683323 |
2020; |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. |
Shafin, Kishwar; Pesout, Trevor; Lorig-Roach, Ryan; Haukness, Marina; Olsen, Hugh E; Bosworth, Colleen; Armstrong, Joel; Tigyi, Kristof; Maurer, Nicholas; Koren, Sergey; Sedlazeck, Fritz J; Marschall, Tobias; Mayes, Simon; Costa, Vania; Zook, Justin M; Liu, Kelvin J; Kilburn, Duncan; Sorensen, Melanie; Munson, Katy M; Vollger, Mitchell R; Monlong, Jean; Garrison, Erik; Eichler, Evan E; Salama, Sofie; Haussler, David; Green, Richard E; Akeson, Mark; Phillippy, Adam; Miga, Karen H; Carnevali, Paolo; Jain, Miten; Paten, Benedict |
Nature biotechnology. |
32686750 |
2020 09; |
| Using blockchain to log genome dataset access: efficient storage and query. |
Gürsoy, Gamze; Bjornson, Robert; Green, Molly E; Gerstein, Mark |
BMC medical genomics. |
32693796 |
2020 Jul 21; |
| iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching. |
Kuo, Tsung-Ting; Jiang, Xiaoqian; Tang, Haixu; Wang, XiaoFeng; Bath, Tyler; Bu, Diyue; Wang, Lei; Harmanci, Arif; Zhang, Shaojie; Zhi, Degui; Sofia, Heidi J; Ohno-Machado, Lucila |
BMC medical genomics. |
32693816 |
2020 Jul 21; |
| Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. |
Krissaane, Inès; De Niz, Carlos; Gutiérrez-Sacristán, Alba; Korodi, Gabor; Ede, Nneka; Kumar, Ranjay; Lyons, Jessica; Manrai, Arjun; Patel, Chirag; Kohane, Isaac; Avillach, Paul |
Journal of the American Medical Informatics Association : JAMIA |
32719837 |
2020 09 01 |
| The ENIGMA sports injury working group:- an international collaboration to further our understanding of sport-related brain injury. |
Koerte, Inga K; Esopenko, Carrie; Hinds 2nd, Sidney R; Shenton, Martha E; Bonke, Elena M; Bazarian, Jeffrey J; Bickart, Kevin C; Bigler, Erin D; Bouix, Sylvain; Buckley, Thomas A; Choe, Meeryo C; Echlin, Paul S; Gill, Jessica; Giza, Christopher C; Hayes, Jasmeet; Hodges, Cooper B; Irimia, Andrei; Johnson, Paula K; Kenney, Kimbra; Levin, Harvey S; Lin, Alexander P; Lindsey, Hannah M; Lipton, Michael L; Max, Jeffrey E; Mayer, Andrew R; Meier, Timothy B; Merchant-Borna, Kian; Merkley, Tricia L; Mills, Brian D; Newsome, Mary R; Porfido, Tara; Stephens, Jaclyn A; Tartaglia, Maria Carmela; Ware, Ashley L; Zafonte, Ross D; Zeineh, Michael M; Thompson, Paul M; Tate, David F; Dennis, Emily L; Wilde, Elisabeth A; Baron, David |
Brain imaging and behavior. |
32720179 |
2020 Jul 27; |
| What we learn about bipolar disorder from large-scale neuroimaging: Findings and future directions from the ENIGMA Bipolar Disorder Working Group. |
Ching, Christopher R K; Hibar, Derrek P; Gurholt, Tiril P; Nunes, Abraham; Thomopoulos, Sophia I; Abé, Christoph; Agartz, Ingrid; Brouwer, Rachel M; Cannon, Dara M; de Zwarte, Sonja M C; Eyler, Lisa T; Favre, Pauline; Hajek, Tomas; Haukvik, Unn K; Houenou, Josselin; Landén, Mikael; Lett, Tristram A; McDonald, Colm; Nabulsi, Leila; Patel, Yash; Pauling, Melissa E; Paus, Tomas; Radua, Joaquim; Soeiro-de-Souza, Marcio G; Tronchin, Giulia; van Haren, Neeltje E M; Vieta, Eduard; Walter, Henrik; Zeng, Ling-Li; Alda, Martin; Almeida, Jorge; Alnaes, Dag; Alonso-Lana, Silvia; Altimus, Cara; Bauer, Michael; Baune, Bernhard T; Bearden, Carrie E; Bellani, Marcella; Benedetti, Francesco; Berk, Michael; Bilderbeck, Amy C; Blumberg, Hilary P; Bøen, Erlend; Bollettini, Irene; Del Mar Bonnin, Caterina; Brambilla, Paolo; Canales-Rodríguez, Erick J; Caseras, Xavier; Dandash, Orwa; Dannlowski, Udo; Delvecchio, Giuseppe; Díaz-Zuluaga, Ana M; Dima, Danai; Duchesnay, Édouard; Elvsåshagen, Torbjørn; Fears, Scott C; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Green, Melissa J; Grotegerd, Dominik; Gruber, Oliver; Haarman, Bartholomeus C M; Henry, Chantal; Howells, Fleur M; Ives-Deliperi, Victoria; Jansen, Andreas; Kircher, Tilo T J; Knöchel, Christian; Kramer, Bernd; Lafer, Beny; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; MacIntosh, Bradley J; Melloni, Elisa M T; Mitchell, Philip B; Nenadic, Igor; Nery, Fabiano; Nugent, Allison C; Oertel, Viola; Ophoff, Roel A; Ota, Miho; Overs, Bronwyn J; Pham, Daniel L; Phillips, Mary L; Pineda-Zapata, Julian A; Poletti, Sara; Polosan, Mircea; Pomarol-Clotet, Edith; Pouchon, Arnaud; Quidé, Yann; Rive, Maria M; Roberts, Gloria; Ruhe, Henricus G; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Schene, Aart H; Sim, Kang; Soares, Jair C; Stäblein, Michael; Stein, Dan J; Tamnes, Christian K; Thomaidis, Georgios V; Upegui, Cristian Vargas; Veltman, Dick J; Wessa, Michèle; Westlye, Lars T; Whalley, Heather C; Wolf, Daniel H; Wu, Mon-Ju; Yatham, Lakshmi N; Zarate, Carlos A; Thompson, Paul M; Andreassen, Ole A; ENIGMA Bipolar Disorder Working Group |
Human brain mapping |
32725849 |
2022 Jan |
| The anatomy of a distributed predictive modeling framework: online learning, blockchain network, and consensus algorithm. |
Kuo, Tsung-Ting |
JAMIA open |
32734160 |
2020 Jul |
| Challenges and opportunities for neuroimaging in young patients with traumatic brain injury: a coordinated effort towards advancing discovery from the ENIGMA pediatric moderate/severe TBI group. |
Dennis, Emily L; Caeyenberghs, Karen; Asarnow, Robert F; Babikian, Talin; Bartnik-Olson, Brenda; Bigler, Erin D; Figaji, Anthony; Giza, Christopher C; Goodrich-Hunsaker, Naomi J; Hodges, Cooper B; Hoskinson, Kristen R; Königs, Marsh; Levin, Harvey S; Lindsey, Hannah M; Livny, Abigail; Max, Jeffrey E; Merkley, Tricia L; Newsome, Mary R; Olsen, Alexander; Ryan, Nicholas P; Spruiell, Matthew S; Suskauer, Stacy J; Thomopoulos, Sophia I; Ware, Ashley L; Watson, Christopher G; Wheeler, Anne L; Yeates, Keith Owen; Zielinski, Brandon A; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A |
Brain imaging and behavior |
32734437 |
2020 Jul 30 |
| Ethical issues in global neuroimaging genetics collaborations. |
Palk, Andrea; Illes, Judy; Thompson, Paul M; Stein, Dan J |
NeuroImage. |
32736000 |
2020 11 01; |
| Behavioral Differences Between Subject Groups Identified Using Smart Homes and Change Point Detection. |
Sprint, Gina; Cook, Diane J; Fritz, Roschelle |
IEEE journal of biomedical and health informatics |
32750924 |
2021 Feb |
| Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing. |
Liu, Yan; Ferguson, Fleur M; Li, Lianbo; Kuljanin, Miljan; Mills, Caitlin E; Subramanian, Kartik; Harshbarger, Wayne; Gondi, Sudershan; Wang, Jinhua; Sorger, Peter K; Mancias, Joseph D; Gray, Nathanael S; Westover, Kenneth D |
Cell chemical biology. |
32755567 |
2020 Aug 04; |
| Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images: Algorithm Development and Validation. |
Yu, Kun-Hsing; Lee, Tsung-Lu Michael; Yen, Ming-Hsuan; Kou, S C; Rosen, Bruce; Chiang, Jung-Hsien; Kohane, Isaac S |
Journal of medical Internet research |
32755895 |
2020 08 05 |
| Performing Group Difference Testing on Graph Structured Data from GANs: Analysis and Applications in Neuroimaging. |
Dinh, Tuan Quang; Xiong, Yunyang; Huang, Zhichun; Vo, Tien; Mishra, Akshay; Kim, Won Hwa; Ravi, Sathya; Singh, Vikas |
IEEE transactions on pattern analysis and machine intelligence |
32763848 |
2020 Aug 07 |
| Notifications to Improve Engagement With an Alcohol Reduction App: Protocol for a Micro-Randomized Trial. |
Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, Elizabeth |
JMIR research protocols. |
32763878 |
2020 Aug 07; |
| ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants. |
Manjunath, Mohith; Zhang, Yi; Zhang, Shilu; Roy, Sushmita; Perez-Pinera, Pablo; Song, Jun S |
Frontiers in genetics. |
32765587 |
2020; |
| Longitudinal associations between amygdala reactivity and cannabis use in a large sample of adolescents. |
Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Albaugh, Matthew D; Fontaine, Nicholas R; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Artiges, Eric; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh |
Psychopharmacology |
32772145 |
2020 Nov |
| Cross-Modal Data Programming Enables Rapid Medical Machine Learning. |
Dunnmon, Jared A; Ratner, Alexander J; Saab, Khaled; Khandwala, Nishith; Markert, Matthew; Sagreiya, Hersh; Goldman, Roger; Lee-Messer, Christopher; Lungren, Matthew P; Rubin, Daniel L; Ré, Christopher |
Patterns (New York, N.Y.). |
32776018 |
2020 May 08; |
| A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia. |
Luo, Yuan; Eran, Alal; Palmer, Nathan; Avillach, Paul; Levy-Moonshine, Ami; Szolovits, Peter; Kohane, Isaac S |
Nature medicine. |
32778826 |
2020 Sep; |
| Correction to "Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold". |
Ferguson, Fleur M; Liu, Yan; Harshbarger, Wayne; Huang, Ling; Wang, Jinhua; Deng, Xianming; Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander; Muthuswamy, Senthil; Westover, Kenneth D; Gray, Nathanael S |
Journal of medicinal chemistry |
32790356 |
2020 Sep 10 |
| Deep neural networks enable quantitative movement analysis using single-camera videos. |
Kidzi?ski, ?ukasz; Yang, Bryan; Hicks, Jennifer L; Rajagopal, Apoorva; Delp, Scott L; Schwartz, Michael H |
Nature communications. |
32792511 |
2020 08 13; |
| Exploration of PCORnet Data Resources for Assessing Use of Molecular-Guided Cancer Treatment. |
Carnahan, Ryan M; Waitman, Lemuel R; Charlton, Mary E; Schroeder, Mary C; Bossler, Aaron D; Campbell, W Scott; Campbell, James R; McDowell, Bradley D; Smith, Nicholas C; Gryzlak, Brian M; Chrischilles, Elizabeth A |
JCO clinical cancer informatics. |
32795185 |
2020 Aug; |
| The clinical utility of proton magnetic resonance spectroscopy in traumatic brain injury: recommendations from the ENIGMA MRS working group. |
Bartnik-Olson, Brenda L; Alger, Jeffry R; Babikian, Talin; Harris, Ashley D; Holshouser, Barbara; Kirov, Ivan I; Maudsley, Andrew A; Thompson, Paul M; Dennis, Emily L; Tate, David F; Wilde, Elisabeth A; Lin, Alexander |
Brain imaging and behavior |
32797399 |
2020 Aug 14 |
| Brain structure and habitat: Do the brains of our children tell us where they have been brought up? |
Kühn, Simone; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Gallinat, Jürgen |
NeuroImage |
32800993 |
2020 11 15 |
| Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. |
Funk, Cory C; Casella, Alex M; Jung, Segun; Richards, Matthew A; Rodriguez, Alex; Shannon, Paul; Donovan-Maiye, Rory; Heavner, Ben; Chard, Kyle; Xiao, Yukai; Glusman, Gustavo; Ertekin-Taner, Nilufer; Golde, Todd E; Toga, Arthur; Hood, Leroy; Van Horn, John D; Kesselman, Carl; Foster, Ian; Madduri, Ravi; Price, Nathan D; Ament, Seth A |
Cell reports. |
32814038 |
2020 Aug 18; |
| White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study. |
Hatton, Sean N; Huynh, Khoa H; Bonilha, Leonardo; Abela, Eugenio; Alhusaini, Saud; Altmann, Andre; Alvim, Marina K M; Balachandra, Akshara R; Bartolini, Emanuele; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris; Bargallo, Núria; Caldairou, Benoit; Caligiuri, Maria E; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Davoodi-Bojd, Esmaeil; Desmond, Patricia M; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Duncan, John S; Focke, Niels K; Foley, Sonya F; Gambardella, Antonio; Gleichgerrcht, Ezequiel; Guerrini, Renzo; Hamandi, Khalid; Ishikawa, Akari; Keller, Simon S; Kochunov, Peter V; Kotikalapudi, Raviteja; Kreilkamp, Barbara A K; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Lui, Elaine; Martin, Pascal; Mascalchi, Mario; Moreira, José C V; Morita-Sherman, Marcia E; O'Brien, Terence J; Pardoe, Heath R; Pariente, José C; Ribeiro, Letícia F; Richardson, Mark P; Rocha, Cristiane S; Rodríguez-Cruces, Raúl; Rosenow, Felix; Severino, Mariasavina; Sinclair, Benjamin; Soltanian-Zadeh, Hamid; Striano, Pasquale; Taylor, Peter N; Thomas, Rhys H; Tortora, Domenico; Velakoulis, Dennis; Vezzani, Annamaria; Vivash, Lucy; von Podewils, Felix; Vos, Sjoerd B; Weber, Bernd; Winston, Gavin P; Yasuda, Clarissa L; Zhu, Alyssa H; Thompson, Paul M; Whelan, Christopher D; Jahanshad, Neda; Sisodiya, Sanjay M; McDonald, Carrie R |
Brain : a journal of neurology. |
32814957 |
2020 Aug 01; |
| A review investigating the relationship between cannabis use and adolescent cognitive functioning. |
Cyrus, Elena; Coudray, Makella S; Kiplagat, Sandra; Mariano, Yandra; Noel, Ines; Galea, Jerome T; Hadley, Dexter; Dévieux, Jessy G; Wagner, Eric |
Current opinion in psychology |
32818908 |
2021 04 |
| DataRemix: a universal data transformation for optimal inference from gene expression datasets. |
Mao, Weiguang; Rahimikollu, Javad; Hausler, Ryan; Chikina, Maria |
Bioinformatics (Oxford, England) |
32821903 |
2021 05 17 |
| Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies. |
Zhao, Lu; Batta, Ishaan; Matloff, William; O'Driscoll, Caroline; Hobel, Samuel; Toga, Arthur W |
Neuroinformatics |
32822005 |
2020 Aug 21 |
| Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. |
Adams, Taylor S; Schupp, Jonas C; Poli, Sergio; Ayaub, Ehab A; Neumark, Nir; Ahangari, Farida; Chu, Sarah G; Raby, Benjamin A; DeIuliis, Giuseppe; Januszyk, Michael; Duan, Qiaonan; Arnett, Heather A; Siddiqui, Asim; Washko, George R; Homer, Robert; Yan, Xiting; Rosas, Ivan O; Kaminski, Naftali |
Science advances |
32832599 |
2020 07 |
| Feature-based molecular networking in the GNPS analysis environment. |
Nothias, Louis-Félix; Petras, Daniel; Schmid, Robin; Dührkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R; Dang, Tam; Garg, Neha; Gauglitz, Julia M; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K; Kameník, Zden?k; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H, Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V; Pluskal, Tomá?; Quinn, Robert A; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J J; Vargas, Fernando; Weldon, Kelly C; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Böcker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C |
Nature methods. |
32839597 |
2020 09; |
| Common and gender-specific associations with cocaine use on gray matter volume: Data from the ENIGMA addiction working group. |
Rabin, Rachel A; Mackey, Scott; Parvaz, Muhammad A; Cousijn, Janna; Li, Chiang-Shan; Pearlson, Godfrey; Schmaal, Lianne; Sinha, Rajita; Stein, Elliot; Veltman, Dick; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh; Alia-Klein, Nelly; Goldstein, Rita Z |
Human brain mapping |
32857473 |
2022 Jan |
| Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets. |
Marino, Simeone; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Toga, Arthur W; Zhao, Lu; Jian, Yingsi; Yang, Yichen; Chen, Yehu; Wu, Qiucheng; Wild, Jessica; Cummings, Brandon; Dinov, Ivo D |
PloS one. |
32857775 |
2020; |
| Neural Correlates of Adolescent Irritability and Its Comorbidity With Psychiatric Disorders. |
Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; Higgins, Stephen T; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium |
Journal of the American Academy of Child and Adolescent Psychiatry |
32860907 |
2020 12 |
| mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements. |
Bhamber, Ranjeet S; Jankevics, Andris; Deutsch, Eric W; Jones, Andrew R; Dowsey, Andrew W |
Journal of proteome research |
32864978 |
2021 Jan 01 |
| Literature-Wide Association Studies (LWAS) for a Rare Disease: Drug Repurposing for Inflammatory Breast Cancer. |
Ji, Xiaojia; Jin, Chunming; Dong, Xialan; Dixon, Maria S; Williams, Kevin P; Zheng, Weifan |
Molecules (Basel, Switzerland) |
32872166 |
2020 Aug 28 |
| Ten simple rules for an inclusive summer coding program for non-computer-science undergraduates. |
Pennings, Pleuni; Banuelos, Mayra M; Catalan, Francisca L; Caudill, Victoria R; Chakalov, Bozhidar; Hernandez, Selena; Jones, Jeanice; Okorie, Chinomnso; Modrek, Sepideh; Rohlfs, Rori; Adelstein, Nicole |
PLoS computational biology |
32881872 |
2020 09 |
| Suitability of administrative claims databases for bariatric surgery research - is the glass half-full or half-empty? |
Li, Xiaojuan; Lewis, Kristina H; Callaway, Katherine; Wharam, J Frank; Toh, Sengwee |
BMC medical research methodology. |
32894060 |
2020 Sep 07; |
| MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. |
Choi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M; Hüttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Müller, Maik; Goetze, Sandra; Pavlou, Maria; Verschueren, Erik; Wollscheid, Bernd; Nesvizhskii, Alexey I; Reiter, Lukas; Dunkley, Tom; Sabidó, Eduard; Bandeira, Nuno; Vitek, Olga |
Nature methods. |
32929271 |
2020 Oct; |
| Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen R; Snyder, Michael P; Baker, Mark S; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W |
Journal of proteome research. |
32931287 |
2020 Dec 04; |
| The reliability and heritability of cortical folds and their genetic correlations across hemispheres. |
Pizzagalli, Fabrizio; Auzias, Guillaume; Yang, Qifan; Mathias, Samuel R; Faskowitz, Joshua; Boyd, Joshua D; Amini, Armand; Rivière, Denis; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Mangin, Jean-François; Glahn, David C; Blangero, John; Wright, Margaret J; Thompson, Paul M; Kochunov, Peter; Jahanshad, Neda |
Communications biology. |
32934300 |
2020 Sep 15; |
| PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. |
Liu, Peng; Soukup, Alexandra A; Bresnick, Emery H; Dewey, Colin N; Kele?, Sündüz |
Genome research. |
32958497 |
2020 Nov; |
| Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. |
Hofer, Edith; Roshchupkin, Gennady V; Adams, Hieab H H; Knol, Maria J; Lin, Honghuang; Li, Shuo; Zare, Habil; Ahmad, Shahzad; Armstrong, Nicola J; Satizabal, Claudia L; Bernard, Manon; Bis, Joshua C; Gillespie, Nathan A; Luciano, Michelle; Mishra, Aniket; Scholz, Markus; Teumer, Alexander; Xia, Rui; Jian, Xueqiu; Mosley, Thomas H; Saba, Yasaman; Pirpamer, Lukas; Seiler, Stephan; Becker, James T; Carmichael, Owen; Rotter, Jerome I; Psaty, Bruce M; Lopez, Oscar L; Amin, Najaf; van der Lee, Sven J; Yang, Qiong; Himali, Jayandra J; Maillard, Pauline; Beiser, Alexa S; DeCarli, Charles; Karama, Sherif; Lewis, Lindsay; Harris, Mat; Bastin, Mark E; Deary, Ian J; Veronica Witte, A; Beyer, Frauke; Loeffler, Markus; Mather, Karen A; Schofield, Peter R; Thalamuthu, Anbupalam; Kwok, John B; Wright, Margaret J; Ames, David; Trollor, Julian; Jiang, Jiyang; Brodaty, Henry; Wen, Wei; Vernooij, Meike W; Hofman, Albert; Uitterlinden, André G; Niessen, Wiro J; Wittfeld, Katharina; Bülow, Robin; Völker, Uwe; Pausova, Zdenka; Bruce Pike, G; Maingault, Sophie; Crivello, Fabrice; Tzourio, Christophe; Amouyel, Philippe; Mazoyer, Bernard; Neale, Michael C; Franz, Carol E; Lyons, Michael J; Panizzon, Matthew S; Andreassen, Ole A; Dale, Anders M; Logue, Mark; Grasby, Katrina L; Jahanshad, Neda; Painter, Jodie N; Colodro-Conde, Lucía; Bralten, Janita; Hibar, Derrek P; Lind, Penelope A; Pizzagalli, Fabrizio; Stein, Jason L; Thompson, Paul M; Medland, Sarah E; ENIGMA consortium; Sachdev, Perminder S; Kremen, William S; Wardlaw, Joanna M; Villringer, Arno; van Duijn, Cornelia M; Grabe, Hans J; Longstreth Jr, William T; Fornage, Myriam; Paus, Tomas; Debette, Stephanie; Arfan Ikram, M; Schmidt, Helena; Schmidt, Reinhold; Seshadri, Sudha |
Nature communications. |
32963231 |
2020 09 22; |
| Graph-based regularization for regression problems with alignment and highly-correlated designs. |
Li, Yuan; Mark, Benjamin; Raskutti, Garvesh; Willett, Rebecca; Song, Hyebin; Neiman, David |
SIAM journal on mathematics of data science. |
32968717 |
2020; |
| Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective. |
Erdemir, Ahmet; Mulugeta, Lealem; Ku, Joy P; Drach, Andrew; Horner, Marc; Morrison, Tina M; Peng, Grace C Y; Vadigepalli, Rajanikanth; Lytton, William W; Myers Jr, Jerry G |
Journal of translational medicine. |
32993675 |
2020 09 29; |
| A semantic similarity based methodology for predicting protein-protein interactions: Evaluation with P53-interacting kinases. |
Cox, Steven; Dong, Xialan; Rai, Ruhi; Christopherson, Laura; Zheng, Weifan; Tropsha, Alexander; Schmitt, Charles |
Journal of biomedical informatics |
33007449 |
2020 11 |
| Substance Use Initiation, Particularly Alcohol, in Drug-Naive Adolescents: Possible Predictors and Consequences From a Large Cohort Naturalistic Study. |
Ivanov, Iliyan; Parvaz, Muhammad A; Velthorst, Eva; Shaik, Riaz B; Sandin, Sven; Gan, Gabriela; Spechler, Philip; Albaugh, Matthew D; Chaarani, Bader; Mackey, Scott; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium |
Journal of the American Academy of Child and Adolescent Psychiatry |
33011213 |
2021 05 |
| Investigating genetic drivers of dermatomyositis pathogenesis using meta-analysis. |
Aljabban, Jihad; Syed, Saad; Syed, Sharjeel; Rohr, Michael; Weisleder, Noah; McElhanon, Kevin E; Hasan, Laith; Safeer, Laraib; Hoffman, Kalyn; Aljabban, Nabeal; Mukhtar, Mohamed; Adapa, Nikhil; Allarakhia, Zahir; Panahiazar, Maryam; Neuhaus, Isaac; Kim, Susan; Hadley, Dexter; Jarjour, Wael |
Heliyon |
33015383 |
2020 Sep |
| Intracranial and subcortical volumes in adolescents with early-onset psychosis: A multisite mega-analysis from the ENIGMA consortium. |
Gurholt, Tiril P; Lonning, Vera; Nerland, Stener; Jørgensen, Kjetil N; Haukvik, Unn K; Alloza, Clara; Arango, Celso; Barth, Claudia; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Dandash, Orwa; Díaz-Caneja, Covadonga M; Edbom, Carl T; van Erp, Theo G M; Fett, Anne-Kathrin J; Frangou, Sophia; Goldstein, Benjamin I; Grigorian, Anahit; Jahanshad, Neda; James, Anthony C; Janssen, Joost; Johannessen, Cecilie; Karlsgodt, Katherine H; Kempton, Matthew J; Kochunov, Peter; Krabbendam, Lydia; Kyriakopoulos, Marinos; Lundberg, Mathias; MacIntosh, Bradley J; Rund, Bjørn Rishovd; Smelror, Runar E; Sultan, Alysha; Tamnes, Christian K; Thomopoulos, Sophia I; Vajdi, Ariana; Wedervang-Resell, Kirsten; Myhre, Anne M; Andreassen, Ole A; Thompson, Paul M; Agartz, Ingrid; ENIGMA-EOP Working Group |
Human brain mapping |
33017498 |
2022 Jan |
| Intelligence, educational attainment, and brain structure in those at familial high-risk for schizophrenia or bipolar disorder. |
de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Alonso-Lana, Silvia; Bearden, Carrie E; Bertolino, Alessandro; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Canales-Rodríguez, Erick J; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Del Mar Bonnin, Caterina; Demro, Caroline; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fatjó-Vilas, Mar; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goikolea, Jose M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hidiroglu Ongun, Ceren; Hillegers, Manon H J; Houenou, Josselin; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Nabulsi, Leila; Newport, Jason; Olman, Cheryl A; van Os, Jim; Overs, Bronwyn J; Ozerdem, Aysegul; Pergola, Giulio; Picchioni, Marco M; Piguet, Camille; Pomarol-Clotet, Edith; Radua, Joaquim; Ramsay, Ian S; Richter, Anja; Roberts, Gloria; Salvador, Raymond; Saricicek Aydogan, Aybala; Sarró, Salvador; Schofield, Peter R; Simsek, Esma M; Simsek, Fatma; Soares, Jair C; Sponheim, Scott R; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Vieta, Eduard; Walter, Henrik; Weinberger, Daniel R; Whalley, Heather C; Wu, Mon-Ju; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; Thomopoulos, Sophia I; van Erp, Theo G M; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M |
Human brain mapping. |
33027543 |
2020 Oct 07; |
| Neuroimaging Association Scores: reliability and validity of aggregate measures of brain structural features linked to mental disorders in youth. |
Axelrud, Luiza Kvitko; Simioni, André Rafael; Pine, Daniel Samuel; Winkler, Anderson Marcelo; Pan, Pedro Mario; Sato, João Ricardo; Zugman, André; Parker, Nadine; Picon, Felipe; Jackowski, Andrea; Hoexter, Marcelo Queiroz; IMAGEN Consortium; Barker, Gareth; Martinot, Jean-Luc; Martinot, Marie Laure Paillère; Satterthwaite, Theodore; Rohde, Luis Augusto; Milham, Michael; Barker, Edward Dylan; Salum, Giovanni Abrahão |
European child & adolescent psychiatry |
33030612 |
2021 Dec |
| Identifiers.org: Compact Identifier services in the cloud. |
Bernal-Llinares, Manuel; Ferrer-Gómez, Javier; Juty, Nick; Goble, Carole; Wimalaratne, Sarala M; Hermjakob, Henning |
Bioinformatics (Oxford, England) |
33031499 |
2021 07 19 |
| Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters. |
Bruin, Willem B; Taylor, Luke; Thomas, Rajat M; Shock, Jonathan P; Zhutovsky, Paul; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Assogna, Francesca; Benedetti, Francesco; Beucke, Jan C; Boedhoe, Premika S W; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan K; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Ely, Benjamin A; Feusner, Jamie D; Fitzgerald, Kate D; Fouche, Jean-Paul; Fridgeirsson, Egill A; Gruner, Patricia; Gürsel, Deniz A; Hauser, Tobias U; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ivanov, Iliyan; James, Anthony; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kuno, Masaru; Kvale, Gerd; Kwon, Jun Soo; Liu, Yanni; Lochner, Christine; Lázaro, Luisa; Marques, Paulo; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Moreira, Pedro S; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; O'Neill, Joseph; Pariente, Jose C; Perriello, Chris; Piacentini, John; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Rus-Oswald, Oana G; Sakai, Yuki; Sato, João R; Schmaal, Lianne; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Wang, Zhen; Yun, Je-Yeon; van Rooij, Daan; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; van Wingen, Guido A |
Translational psychiatry. |
33033241 |
2020 Oct 08; |
| Greater male than female variability in regional brain structure across the lifespan. |
Wierenga, Lara M; Doucet, Gaelle E; Dima, Danai; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andreassen, Ole A; Anticevic, Alan; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; den Braber, Anouk; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Calhoun, Vince D; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Chaim-Avancini, Tiffany M; Ching, Christopher Rk; Clark, Vincent P; Conrod, Patricia J; Conzelmann, Annette; Crivello, Fabrice; Davey, Christopher G; Dickie, Erin W; Ehrlich, Stefan; Van't Ent, Dennis; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Fuentes-Claramonte, Paola; de Geus, Eco Jc; Di Giorgio, Annabella; Glahn, David C; Gotlib, Ian H; Grabe, Hans J; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Gurholt, Tiril P; de Haan, Lieuwe; Haatveit, Beathe; Harrison, Ben J; Hartman, Catharina A; Hatton, Sean N; Heslenfeld, Dirk J; van den Heuvel, Odile A; Hickie, Ian B; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony C; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kalnin, Andrew J; Karolinska Schizophrenia Project (KaSP) Consortium; Klein, Marieke; Koenders, Laura; Kolskår, Knut K; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lee, Phil H; Lochner, Christine; Machielsen, Marise Wj; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; van der Meer, Dennis; Menchón, José M; Naaijen, Jilly; Nyberg, Lars; Oosterlaan, Jaap; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Radua, Joaquim; Reif, Andreas; Richard, Geneviève; Roffman, Joshua L; Rosa, Pedro Gp; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Sim, Kang; Simmons, Andrew; Smoller, Jordan W; Sommer, Iris E; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Szeszko, Philip R; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Trollor, Julian N; Uhlmann, Anne; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Wang, Lei; Wang, Yang; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather C; Williams, Steven Cr; Wittfeld, Katharina; Wolf, Daniel H; Wright, Margaret J; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; de Zubicaray, Greig I; Thompson, Paul M; Crone, Eveline A; Frangou, Sophia; Tamnes, Christian K |
Human brain mapping. |
33044802 |
2020 Oct 12; |
| Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway. |
Luo, Qiang; Zhang, Lingli; Huang, Chu-Chung; Zheng, Yan; Kanen, Jonathan W; Zhao, Qi; Yao, Ye; Quinlan, Erin B; Jia, Tianye; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Schumann, Gunter; Li, Fei; Feng, Jianfeng; Desrivières, Sylvane; Robbins, Trevor W; IMAGEN consortium |
BMC medicine. |
33054810 |
2020 Oct 15; |
| Predicting alcohol dependence from multi-site brain structural measures. |
Hahn, Sage; Mackey, Scott; Cousijn, Janna; Foxe, John J; Heinz, Andreas; Hester, Robert; Hutchinson, Kent; Kiefer, Falk; Korucuoglu, Ozlem; Lett, Tristram; Li, Chiang-Shan R; London, Edythe; Lorenzetti, Valentina; Maartje, Luijten; Momenan, Reza; Orr, Catherine; Paulus, Martin; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot; van Holst, Ruth J; Veltman, Dick; Walter, Henrik; Wiers, Reinout W; Yucel, Murat; Thompson, Paul M; Conrod, Patricia; Allgaier, Nicholas; Garavan, Hugh |
Human brain mapping |
33064342 |
2022 Jan |
| A high-stringency blueprint of the human proteome. |
Adhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; Omenn, Gilbert S; Pennington, Stephen R; Paik, Young-Ki; Overall, Christopher M; Corrales, Fernando J; Cristea, Ileana M; Van Eyk, Jennifer E; Uhlén, Mathias; Lindskog, Cecilia; Chan, Daniel W; Bairoch, Amos; Waddington, James C; Justice, Joshua L; LaBaer, Joshua; Rodriguez, Henry; He, Fuchu; Kostrzewa, Markus; Ping, Peipei; Gundry, Rebekah L; Stewart, Peter; Srivastava, Sanjeeva; Srivastava, Sudhir; Nogueira, Fabio C S; Domont, Gilberto B; Vandenbrouck, Yves; Lam, Maggie P Y; Wennersten, Sara; Vizcaino, Juan Antonio; Wilkins, Marc; Schwenk, Jochen M; Lundberg, Emma; Bandeira, Nuno; Marko-Varga, Gyorgy; Weintraub, Susan T; Pineau, Charles; Kusebauch, Ulrike; Moritz, Robert L; Ahn, Seong Beom; Palmblad, Magnus; Snyder, Michael P; Aebersold, Ruedi; Baker, Mark S |
Nature communications. |
33067450 |
2020 10 16; |
| Testing a convolutional neural network-based hippocampal segmentation method in a stroke population. |
Zavaliangos-Petropulu, Artemis; Tubi, Meral A; Haddad, Elizabeth; Zhu, Alyssa; Braskie, Meredith N; Jahanshad, Neda; Thompson, Paul M; Liew, Sook-Lei |
Human brain mapping |
33067842 |
2022 Jan |
| Regularization of Deep Neural Networks for EEG Seizure Detection to Mitigate Overfitting. |
Saqib, Mohammed; Zhu, Yuanda; Wang, May Dongmei; Beaulieu-Jones, Brett |
Proceedings : Annual International Computer Software and Applications Conference. COMPSAC. |
33073266 |
2020 Jul; |
| In vivo hippocampal subfield volumes in bipolar disorder-A mega-analysis from The Enhancing Neuro Imaging Genetics through Meta-Analysis Bipolar Disorder Working Group. |
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Human brain mapping. |
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2020 Oct 19; |
| Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. |
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Nature communications. |
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| Surrounding vascular geometry associated with basilar tip aneurysm formation. |
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Scientific reports |
33087795 |
2020 10 21 |
| A large-scale genome-wide association study meta-analysis of cannabis use disorder. |
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2020 Dec; |
| Cardiac Imaging of Aortic Valve Area From 34 287 UK Biobank Participants Reveals Novel Genetic Associations and Shared Genetic Comorbidity With Multiple Disease Phenotypes. |
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Circulation. Genomic and precision medicine |
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2020 12 |
| Reconstruction of respiratory variation signals from fMRI data. |
Salas, Jorge A; Bayrak, Roza G; Huo, Yuankai; Chang, Catie |
NeuroImage |
33129927 |
2021 01 15 |
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Manjunath, Mohith; Yan, Jialu; Youn, Yeoan; Drucker, Kristen L; Kollmeyer, Thomas M; McKinney, Andrew M; Zazubovich, Valter; Zhang, Yi; Costello, Joseph F; Eckel-Passow, Jeanette; Selvin, Paul R; Jenkins, Robert B; Song, Jun S |
Neuro-oncology |
33130899 |
2021 04 12 |
| Staphylococcus aureus antimicrobial susceptibility trends and cluster detection in Vermont: 2012-2018. |
Stelling, John; Read, Jennifer S; Peters, Rob; Clark, Adam; Bokhari, Marissa; O'Brien, Thomas F |
Expert review of anti-infective therapy |
33131354 |
2021 06 |
| Linear mixed models with endogenous covariates: modeling sequential treatment effects with application to a mobile health study. |
Qian, Tianchen; Klasnja, Predrag; Murphy, Susan A |
Statistical science : a review journal of the Institute of Mathematical Statistics. |
33132496 |
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| Investigation of Geographic and Macrolevel Variations in LGBTQ Patient Experiences: Longitudinal Social Media Analysis. |
Hswen, Yulin; Zhang, Amanda; Sewalk, Kara C; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B |
Journal of medical Internet research |
33137713 |
2020 Jul 31 |
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NPJ systems biology and applications. |
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International journal of medical informatics. |
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| ppmHR: A Privacy-protecting Tool to Fit Inverse Probability Weighted Cox Models in Multisite Studies. |
Shu, Di; Toh, Sengwee |
Epidemiology (Cambridge, Mass.) |
33165009 |
2021 03 01 |
| Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. |
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Journal of proteome research |
33166149 |
2020 12 04 |
| Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19. |
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| COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database. |
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Bioinformatics (Oxford, England) |
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2021 05 01 |
| Progressive Cactus is a multiple-genome aligner for the thousand-genome era. |
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Nature. |
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Nature |
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| Atlas55+: Brain Functional Atlas of Resting-State Networks for Late Adulthood. |
Doucet, Gaelle E; Labache, Loic; Thompson, Paul M; Joliot, Marc; Frangou, Sophia; Alzheimer’s Disease Neuroimaging Initiative |
Cerebral cortex (New York, N.Y. : 1991) |
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Nakajima, Motohiro; Lemieux, Andrine M; Fiecas, Mark; Chatterjee, Soujanya; Sarker, Hillol; Saleheen, Nazir; Ertin, Emre; Kumar, Santosh; al'Absi, Mustafa |
International journal of psychophysiology : official journal of the International Organization of Psychophysiology |
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Proceedings of the ACM Conference on Health, Inference, and Learning. |
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| Association Between the Economic Environment and the Living Organ Donation Rate: Evidence and Implications. |
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Journal of the American College of Surgeons |
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2021 02 |
| The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer. |
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Cell reports. Medicine. |
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| Uncovering Effective Explanations for Interactive Genomic Data Analysis. |
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| Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study. |
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Science advances. |
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| Bridging the Brain and Data Sciences. |
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Big data |
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| Genotype imputation and variability in polygenic risk score estimation. |
Chen, Shang-Fu; Dias, Raquel; Evans, Doug; Salfati, Elias L; Liu, Shuchen; Wineinger, Nathan E; Torkamani, Ali |
Genome medicine |
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PLoS computational biology |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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| Metaanalysis Reveals Genetic Correlates of Osteoporosis Pathogenesis. |
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The Journal of rheumatology |
33262303 |
2020 Dec 01 |
| Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents. |
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JAMA network open |
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| The Human Phenotype Ontology in 2021. |
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Nucleic acids research |
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| The Impact of COVID-19 on African American Communities in the United States. |
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Health equity |
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| COVID-19 Knowledge Extractor (COKE): A Tool and a Web Portal to Extract Drug - Target Protein Associations from the CORD-19 Corpus of Scientific Publications on COVID-19. |
Korn, Daniel; Pervitsky, Vera; Bobrowski, Tesia; Alves, Vinicius; Schmitt, Charles; Bizon, Cristopher; Baker, Nancy; Chirkova, Rada; Cherkasov, Artem; Muratov, Eugene; Tropsha, Alexander |
ChemRxiv : the preprint server for chemistry |
33269341 |
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| Identification of Dysregulated Genes for Late-Onset Alzheimer's Disease Using Gene Expression Data in Brain. |
Arzouni, Nibal; Matloff, Will; Zhao, Lu; Ning, Kaida; Toga, Arthur W |
Journal of Alzheimer's disease & Parkinsonism |
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Molecular psychiatry. |
33288872 |
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| MicroRNA miR-24-3p reduces DNA damage responses, apoptosis, and susceptibility to chronic obstructive pulmonary disease. |
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JCI insight |
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2021 Jan 25 |
| The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area. |
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Cerebral cortex (New York, N.Y. : 1991) |
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2021 03 05 |
| Ten years of enhancing neuro-imaging genetics through meta-analysis: An overview from the ENIGMA Genetics Working Group. |
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Human brain mapping |
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| HMPDACC: a Human Microbiome Project Multi-omic data resource. |
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Nucleic acids research |
33305317 |
2021 01 08 |
| Engagement With a Behavior Change App for Alcohol Reduction: Data Visualization for Longitudinal Observational Study. |
Bell, Lauren; Garnett, Claire; Qian, Tianchen; Perski, Olga; Williamson, Elizabeth; Potts, Henry Ww |
Journal of medical Internet research |
33306026 |
2020 12 11 |
| Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation. |
Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose |
World neurosurgery |
33307259 |
2021 Feb |
| Comparison of segmentation-free and segmentation-dependent computer-aided diagnosis of breast masses on a public mammography dataset. |
Sawyer Lee, Rebecca; Dunnmon, Jared A; He, Ann; Tang, Siyi; Ré, Christopher; Rubin, Daniel L |
Journal of biomedical informatics |
33309994 |
2021 01 |
| High-fidelity musculoskeletal modeling reveals a motor planning contribution to the speed-accuracy tradeoff. |
Al Borno, Mazen; Vyas, Saurabh; Shenoy, Krishna V; Delp, Scott L |
eLife. |
33325369 |
2020 Dec 16; |
| Synergistic and Antagonistic Drug Combinations against SARS-CoV-2. |
Bobrowski, Tesia; Chen, Lu; Eastman, Richard T; Itkin, Zina; Shinn, Paul; Chen, Catherine Z; Guo, Hui; Zheng, Wei; Michael, Sam; Simeonov, Anton; Hall, Matthew D; Zakharov, Alexey V; Muratov, Eugene N |
Molecular therapy : the journal of the American Society of Gene Therapy |
33333292 |
2021 02 03 |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. |
Warren, Wesley C; Harris, R Alan; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha C; Fernandes, Jason; Dishuck, Philip C; Storer, Jessica M; Raveendran, Muthuswamy; Hillier, LaDeana W; Porubsky, David; Mao, Yafei; Gordon, David; Vollger, Mitchell R; Lewis, Alexandra P; Munson, Katherine M; DeVogelaere, Elizabeth; Armstrong, Joel; Diekhans, Mark; Walker, Jerilyn A; Tomlinson, Chad; Graves-Lindsay, Tina A; Kremitzki, Milinn; Salama, Sofie R; Audano, Peter A; Escalona, Merly; Maurer, Nicholas W; Antonacci, Francesca; Mercuri, Ludovica; Maggiolini, Flavia A M; Catacchio, Claudia Rita; Underwood, Jason G; O'Connor, David H; Sanders, Ashley D; Korbel, Jan O; Ferguson, Betsy; Kubisch, H Michael; Picker, Louis; Kalin, Ned H; Rosene, Douglas; Levine, Jon; Abbott, David H; Gray, Stanton B; Sanchez, Mar M; Kovacs-Balint, Zsofia A; Kemnitz, Joseph W; Thomasy, Sara M; Roberts, Jeffrey A; Kinnally, Erin L; Capitanio, John P; Skene, J H Pate; Platt, Michael; Cole, Shelley A; Green, Richard E; Ventura, Mario; Wiseman, Roger W; Paten, Benedict; Batzer, Mark A; Rogers, Jeffrey; Eichler, Evan E |
Science (New York, N.Y.) |
33335035 |
2020 12 18 |
| Obstacles to the reuse of study metadata in ClinicalTrials.gov. |
Miron, Laura; Gonçalves, Rafael S; Musen, Mark A |
Scientific data |
33339830 |
2020 12 18 |
| OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features. |
Zeng, Billy; Glicksberg, Benjamin S; Newbury, Patrick; Chekalin, Evgeny; Xing, Jing; Liu, Ke; Wen, Anita; Chow, Caven; Chen, Bin |
Nature protocols |
33361798 |
2021 02 |
| FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts. |
Sämann, Philipp G; Iglesias, Juan Eugenio; Gutman, Boris; Grotegerd, Dominik; Leenings, Ramona; Flint, Claas; Dannlowski, Udo; Clarke-Rubright, Emily K; Morey, Rajendra A; van Erp, Theo G M; Whelan, Christopher D; Han, Laura K M; van Velzen, Laura S; Cao, Bo; Augustinack, Jean C; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne |
Human brain mapping |
33368865 |
2020 Dec 27 |
| Community Approaches for Integrating Environmental Exposures into Human Models of Disease. |
Thessen, Anne E; Grondin, Cynthia J; Kulkarni, Resham D; Brander, Susanne; Truong, Lisa; Vasilevsky, Nicole A; Callahan, Tiffany J; Chan, Lauren E; Westra, Brian; Willis, Mary; Rothenberg, Sarah E; Jarabek, Annie M; Burgoon, Lyle; Korrick, Susan A; Haendel, Melissa A |
Environmental health perspectives |
33369481 |
2020 12 |
| OpenSim Moco: Musculoskeletal optimal control. |
Dembia, Christopher L; Bianco, Nicholas A; Falisse, Antoine; Hicks, Jennifer L; Delp, Scott L |
PLoS computational biology |
33370252 |
2020 12 |
| Unmixing for Causal Inference: Thoughts on McCaffrey and Danks. |
Zhang, Kun; Glymour, Madelyn R K |
The British journal for the philosophy of science |
33376450 |
2020 Dec |
| Using indication embeddings to represent patient health for drug safety studies. |
Melamed, Rachel D |
JAMIA open |
33376961 |
2020 Oct |
| Exploring the value of MALDI-TOF MS for the detection of clonal outbreaks of Burkholderia contaminans. |
Fiamanya, Selali; Cipolla, Lucía; Prieto, Mónica; Stelling, John |
Journal of microbiological methods |
33383044 |
2021 Feb |
| Functional Connectivity Predicts Individual Development of Inhibitory Control during Adolescence. |
Wang, Haiyan; Fan, Lingzhong; Song, Ming; Liu, Bing; Wu, Dongya; Jiang, Rongtao; Li, Jin; Li, Ang; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Jiang, Tianzi |
Cerebral cortex (New York, N.Y. : 1991) |
33386409 |
2021 03 31 |
| Network Analysis Reveals a Distinct Axis of Macrophage Activation in Response to Conflicting Inflammatory Cues. |
Liu, Xiaji; Zhang, Jingyuan; Zeigler, Angela C; Nelson, Anders R; Lindsey, Merry L; Saucerman, Jeffrey J |
Journal of immunology (Baltimore, Md. : 1950) |
33408259 |
2021 Feb 15 |
| Coordinating Global Multi-Site Studies of Military-Relevant Traumatic Brain Injury: Opportunities, Challenges, and Harmonization Guidelines. |
Tate, David F; Dennis, Emily L; Adams, John T; Adamson, Maheen M; Belanger, Heather G; Bigler, Erin D; Bouchard, Heather C; Clark, Alexandra L; Delano-Wood, Lisa M; Disner, Seth G; Eapen, Blessen C; Franz, Carol E; Geuze, Elbert; Goodrich-Hunsaker, Naomi J; Han, Kihwan; Hayes, Jasmeet P; Hinds 2nd, Sidney R; Hodges, Cooper B; Hovenden, Elizabeth S; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Lindsey, Hannah M; Morey, Rajendra A; Newsome, Mary R; Ollinger, John; Pugh, Mary Jo; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Taylor, Brian A; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin Sc; Wang, Xin; Ware, Ashley L; Zafonte, Ross; Thompson, Paul M; Wilde, Elisabeth A |
Brain imaging and behavior |
33409819 |
2021 Apr |
| An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. |
Ghaffari, Saba; Hanson, Casey; Schmidt, Remington E; Bouchonville, Kelly J; Offer, Steven M; Sinha, Saurabh |
Genome biology |
33413550 |
2021 01 07 |
| xGAP: A python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery. |
Gorla, Aditya; Jew, Brandon; Zhang, Luke; Sul, Jae Hoon |
Bioinformatics (Oxford, England) |
33416856 |
2021 Jan 08 |
| A neural network to predict the knee adduction moment in patients with osteoarthritis using anatomical landmarks obtainable from 2D video analysis. |
Boswell, M A; Uhlrich, S D; Kidziński, Ł; Thomas, K; Kolesar, J A; Gold, G E; Beaupre, G S; Delp, S L |
Osteoarthritis and cartilage |
33422707 |
2021 Mar |
| Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV. |
Nir, Talia M; Fouche, Jean-Paul; Ananworanich, Jintanat; Ances, Beau M; Boban, Jasmina; Brew, Bruce J; Chaganti, Joga R; Chang, Linda; Ching, Christopher R K; Cysique, Lucette A; Ernst, Thomas; Faskowitz, Joshua; Gupta, Vikash; Harezlak, Jaroslaw; Heaps-Woodruff, Jodi M; Hinkin, Charles H; Hoare, Jacqueline; Joska, John A; Kallianpur, Kalpana J; Kuhn, Taylor; Lam, Hei Y; Law, Meng; Lebrun-Frénay, Christine; Levine, Andrew J; Mondot, Lydiane; Nakamoto, Beau K; Navia, Bradford A; Pennec, Xavier; Porges, Eric C; Salminen, Lauren E; Shikuma, Cecilia M; Surento, Wesley; Thames, April D; Valcour, Victor; Vassallo, Matteo; Woods, Adam J; Thompson, Paul M; Cohen, Ronald A; Paul, Robert; Stein, Dan J; Jahanshad, Neda |
JAMA network open |
33449093 |
2021 01 04 |
| In the Eye of the Beholder: Gaze and Actions in First Person Video. |
Li, Yin; Liu, Miao; Rehg, James M |
IEEE transactions on pattern analysis and machine intelligence |
33449877 |
2023 Jun |
| Structural brain imaging studies offer clues about the effects of the shared genetic etiology among neuropsychiatric disorders. |
Radonjić, Nevena V; Hess, Jonathan L; Rovira, Paula; Andreassen, Ole; Buitelaar, Jan K; Ching, Christopher R K; Franke, Barbara; Hoogman, Martine; Jahanshad, Neda; McDonald, Carrie; Schmaal, Lianne; Sisodiya, Sanjay M; Stein, Dan J; van den Heuvel, Odile A; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Thompson, Paul; Faraone, Stephen V |
Molecular psychiatry |
33456050 |
2021 06 |
| Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. |
Duffy, Ben A; Zhao, Lu; Sepehrband, Farshid; Min, Joyce; Wang, Danny Jj; Shi, Yonggang; Toga, Arthur W; Kim, Hosung; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage |
33460797 |
2021 Jan 15 |
| Generating Accurate Pseudo-labels in Semi-Supervised Learning and Avoiding Overconfident Predictions via Hermite Polynomial Activations. |
Lokhande, Vishnu Suresh; Tasneeyapant, Songwong; Venkatesh, Abhay; Ravi, Sathya N; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition |
33462534 |
2020 Jun |
| FairALM: Augmented Lagrangian Method for Training Fair Models with Little Regret. |
Lokhande, Vishnu Suresh; Akash, Aditya Kumar; Ravi, Sathya N; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision |
33462570 |
2020 Aug |
| Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis. |
Gazula, Harshvardhan; Holla, Bharath; Zhang, Zuo; Xu, Jiayuan; Verner, Eric; Kelly, Ross; Jain, Sanjeev; Bharath, Rose Dawn; Barker, Gareth J; Basu, Debasish; Chakrabarti, Amit; Kalyanram, Kartik; Kumaran, Kalyanaraman; Singh, Lenin; Kuriyan, Rebecca; Murthy, Pratima; Benega, Vivek; Plis, Sergey M; Sarwate, Anand D; Turner, Jessica A; Schumann, Gunter; Calhoun, Vince D |
Neuroinformatics |
33462781 |
2021 10 |
| The Human Brain Is Best Described as Being on a Female/Male Continuum: Evidence from a Neuroimaging Connectivity Study. |
Zhang, Yi; Luo, Qiang; Huang, Chu-Chung; Lo, Chun-Yi Zac; Langley, Christelle; Desrivières, Sylvane; Quinlan, Erin Burke; Banaschewski, Tobias; Millenet, Sabina; Bokde, Arun L W; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Paillère-Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Tsai, Shih-Jen; Lin, Ching-Po; Bullmore, Ed; Schumann, Gunter; Sahakian, Barbara J; Feng, Jianfeng; IMAGEN consortium |
Cerebral cortex (New York, N.Y. : 1991) |
33471126 |
2021 05 10 |
| Meta-Analysis Reveals the Prognostic Relevance of Nuclear and Membrane-Associated Bile Acid Receptors in Gastric Cancer. |
Rohr, Michael; Aljabban, Jihad; Rudeski-Rohr, Trina; Lessans, Spencer; Nakkina, Sai Preethi; Hadley, Dexter; Zhu, Xiang; Altomare, Deborah A |
Clinical and translational gastroenterology |
33492921 |
2021 Jan 12 |
| Are psychotic-like experiences related to a discontinuation of cannabis consumption in young adults? |
Daedelow, Laura S; Banaschewski, Tobias; Berning, Moritz; Bokde, Arun L W; Brühl, Rüdiger; Burke Quinlan, Erin; Curran, H Valerie; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Hardon, Anita; Kaminski, Jakob; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Murray, Hayley; Nees, Frauke; Oei, Nicole Y L; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Rosenthal, Annika; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Wiers, Reinout W; Schumann, Gunter; Heinz, Andreas; ERANID Consortium; IMAGEN Consortium |
Schizophrenia research |
33493775 |
2021 02 |
| Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group. |
Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Schwab, Nathan; Hoke, Colin; Catherine, Orr; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Momenan, Reza; Paulus, Martin P; Schmaal, Lianne; Sinha, Rajita; Sjoerds, Zsuzsika; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Uhlmann, Anne; van Holst, Ruth J; Veltman, Dick J; Wiers, Reinout W; Yücel, Murat; Zhang, Sheng; Jahanshad, Neda; Thompson, Paul M; Conrod, Patricia; Mackey, Scott; Garavan, Hugh |
Addiction biology |
33508888 |
2021 09 |
| Morphological variables associated with ruptured basilar tip aneurysms. |
Zhang, Jian; Can, Anil; Lai, Pui Man Rosalind; Mukundan Jr, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Scientific reports |
33510194 |
2021 01 28 |
| Ultradeep sequencing differentiates patterns of skin clonal mutations associated with sun-exposure status and skin cancer burden. |
Wei, Lei; Christensen, Sean R; Fitzgerald, Megan E; Graham, James; Hutson, Nicholas D; Zhang, Chi; Huang, Ziyun; Hu, Qiang; Zhan, Fenglin; Xie, Jun; Zhang, Jianmin; Liu, Song; Remenyik, Eva; Gellen, Emese; Colegio, Oscar R; Bax, Michael; Xu, Jinhui; Lin, Haifan; Huss, Wendy J; Foster, Barbara A; Paragh, Gyorgy |
Science advances |
33523857 |
2021 01 |
| Evidence for similar structural brain anomalies in youth and adult attention-deficit/hyperactivity disorder: a machine learning analysis. |
Zhang-James, Yanli; Helminen, Emily C; Liu, Jinru; ENIGMA-ADHD Working Group; Franke, Barbara; Hoogman, Martine; Faraone, Stephen V |
Translational psychiatry |
33526765 |
2021 Feb 01 |
| Daily, weekly, seasonal and menstrual cycles in women's mood, behaviour and vital signs. |
Pierson, Emma; Althoff, Tim; Thomas, Daniel; Hillard, Paula; Leskovec, Jure |
Nature human behaviour |
33526880 |
2021 06 |
| Digital Medicine Community Perspectives and Challenges: Survey Study. |
Bent, Brinnae; Sim, Ida; Dunn, Jessilyn P |
JMIR mHealth and uHealth |
33533721 |
2021 Feb 03 |
| Neural network involving medial orbitofrontal cortex and dorsal periaqueductal gray regulation in human alcohol abuse. |
Jia, Tianye; Xie, Chao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Robbins, Trevor W; Feng, Jianfeng; IMAGEN Consortium |
Science advances |
33536210 |
2021 Feb |
| Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. |
Emad, Amin; Sinha, Saurabh |
NPJ systems biology and applications |
33558504 |
2021 Feb 08 |
| Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years. |
Dima, Danai; Modabbernia, Amirhossein; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; Van't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Williams, Steven C R; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Thompson, Paul M; Frangou, Sophia; Karolinska Schizophrenia Project (KaSP) |
Human brain mapping |
33570244 |
2021 Feb 11 |
| Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years. |
Frangou, Sophia; Modabbernia, Amirhossein; Williams, Steven C R; Papachristou, Efstathios; Doucet, Gaelle E; Agartz, Ingrid; Aghajani, Moji; Akudjedu, Theophilus N; Albajes-Eizagirre, Anton; Alnaes, Dag; Alpert, Kathryn I; Andersson, Micael; Andreasen, Nancy C; Andreassen, Ole A; Asherson, Philip; Banaschewski, Tobias; Bargallo, Nuria; Baumeister, Sarah; Baur-Streubel, Ramona; Bertolino, Alessandro; Bonvino, Aurora; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buitelaar, Jan K; Busatto, Geraldo F; Buckner, Randy L; Calhoun, Vincent; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Castellanos, Francisco X; Cervenka, Simon; Chaim-Avancini, Tiffany M; Ching, Christopher R K; Chubar, Victoria; Clark, Vincent P; Conrod, Patricia; Conzelmann, Annette; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; Dale, Anders M; Davey, Christopher; de Geus, Eco J C; de Haan, Lieuwe; de Zubicaray, Greig I; den Braber, Anouk; Dickie, Erin W; Di Giorgio, Annabella; Doan, Nhat Trung; Dørum, Erlend S; Ehrlich, Stefan; Erk, Susanne; Espeseth, Thomas; Fatouros-Bergman, Helena; Fisher, Simon E; Fouche, Jean-Paul; Franke, Barbara; Frodl, Thomas; Fuentes-Claramonte, Paola; Glahn, David C; Gotlib, Ian H; Grabe, Hans-Jörgen; Grimm, Oliver; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Rachel E; Gur, Ruben C; Harrison, Ben J; Hartman, Catharine A; Hatton, Sean N; Heinz, Andreas; Heslenfeld, Dirk J; Hibar, Derrek P; Hickie, Ian B; Ho, Beng-Choon; Hoekstra, Pieter J; Hohmann, Sarah; Holmes, Avram J; Hoogman, Martine; Hosten, Norbert; Howells, Fleur M; Hulshoff Pol, Hilleke E; Huyser, Chaim; Jahanshad, Neda; James, Anthony; Jernigan, Terry L; Jiang, Jiyang; Jönsson, Erik G; Joska, John A; Kahn, Rene; Kalnin, Andrew; Kanai, Ryota; Klein, Marieke; Klyushnik, Tatyana P; Koenders, Laura; Koops, Sanne; Krämer, Bernd; Kuntsi, Jonna; Lagopoulos, Jim; Lázaro, Luisa; Lebedeva, Irina; Lee, Won Hee; Lesch, Klaus-Peter; Lochner, Christine; Machielsen, Marise W J; Maingault, Sophie; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mazoyer, Bernard; McDonald, Colm; McDonald, Brenna C; McIntosh, Andrew M; McMahon, Katie L; McPhilemy, Genevieve; Menchón, José M; Medland, Sarah E; Meyer-Lindenberg, Andreas; Naaijen, Jilly; Najt, Pablo; Nakao, Tomohiro; Nordvik, Jan E; Nyberg, Lars; Oosterlaan, Jaap; de la Foz, Víctor Ortiz-García; Paloyelis, Yannis; Pauli, Paul; Pergola, Giulio; Pomarol-Clotet, Edith; Portella, Maria J; Potkin, Steven G; Radua, Joaquim; Reif, Andreas; Rinker, Daniel A; Roffman, Joshua L; Rosa, Pedro G P; Sacchet, Matthew D; Sachdev, Perminder S; Salvador, Raymond; Sánchez-Juan, Pascual; Sarró, Salvador; Satterthwaite, Theodore D; Saykin, Andrew J; Serpa, Mauricio H; Schmaal, Lianne; Schnell, Knut; Schumann, Gunter; Sim, Kang; Smoller, Jordan W; Sommer, Iris; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Swagerman, Suzanne C; Tamnes, Christian K; Temmingh, Henk S; Thomopoulos, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; Turner, Jessica A; Uhlmann, Anne; van den Heuvel, Odile A; van den Meer, Dennis; van der Wee, Nic J A; van Haren, Neeltje E M; van 't Ent, Dennis; van Erp, Theo G M; Veer, Ilya M; Veltman, Dick J; Voineskos, Aristotle; Völzke, Henry; Walter, Henrik; Walton, Esther; Wang, Lei; Wang, Yang; Wassink, Thomas H; Weber, Bernd; Wen, Wei; West, John D; Westlye, Lars T; Whalley, Heather; Wierenga, Lara M; Wittfeld, Katharina; Wolf, Daniel H; Worker, Amanda; Wright, Margaret J; Yang, Kun; Yoncheva, Yulyia; Zanetti, Marcus V; Ziegler, Georg C; Karolinska Schizophrenia Project (KaSP); Thompson, Paul M; Dima, Danai |
Human brain mapping |
33595143 |
2021 Feb 17 |
| Effects of copy number variations on brain structure and risk for psychiatric illness: Large-scale studies from the ENIGMA working groups on CNVs. |
Sønderby, Ida E; Ching, Christopher R K; Thomopoulos, Sophia I; van der Meer, Dennis; Sun, Daqiang; Villalon-Reina, Julio E; Agartz, Ingrid; Amunts, Katrin; Arango, Celso; Armstrong, Nicola J; Ayesa-Arriola, Rosa; Bakker, Geor; Bassett, Anne S; Boomsma, Dorret I; Bülow, Robin; Butcher, Nancy J; Calhoun, Vince D; Caspers, Svenja; Chow, Eva W C; Cichon, Sven; Ciufolini, Simone; Craig, Michael C; Crespo-Facorro, Benedicto; Cunningham, Adam C; Dale, Anders M; Dazzan, Paola; de Zubicaray, Greig I; Djurovic, Srdjan; Doherty, Joanne L; Donohoe, Gary; Draganski, Bogdan; Durdle, Courtney A; Ehrlich, Stefan; Emanuel, Beverly S; Espeseth, Thomas; Fisher, Simon E; Ge, Tian; Glahn, David C; Grabe, Hans J; Gur, Raquel E; Gutman, Boris A; Haavik, Jan; Håberg, Asta K; Hansen, Laura A; Hashimoto, Ryota; Hibar, Derrek P; Holmes, Avram J; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Jalbrzikowski, Maria; Knowles, Emma E M; Kushan, Leila; Linden, David E J; Liu, Jingyu; Lundervold, Astri J; Martin-Brevet, Sandra; Martínez, Kenia; Mather, Karen A; Mathias, Samuel R; McDonald-McGinn, Donna M; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Modenato, Claudia; Monereo Sánchez, Jennifer; Moreau, Clara A; Mühleisen, Thomas W; Paus, Tomas; Pausova, Zdenka; Prieto, Carlos; Ragothaman, Anjanibhargavi; Reinbold, Céline S; Reis Marques, Tiago; Repetto, Gabriela M; Reymond, Alexandre; Roalf, David R; Rodriguez-Herreros, Borja; Rucker, James J; Sachdev, Perminder S; Schmitt, James E; Schofield, Peter R; Silva, Ana I; Stefansson, Hreinn; Stein, Dan J; Tamnes, Christian K; Tordesillas-Gutiérrez, Diana; Ulfarsson, Magnus O; Vajdi, Ariana; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Vázquez-Bourgon, Javier; Vila-Rodriguez, Fidel; Walters, G Bragi; Wen, Wei; Westlye, Lars T; Wittfeld, Katharina; Zackai, Elaine H; Stefánsson, Kári; Jacquemont, Sebastien; Thompson, Paul M; Bearden, Carrie E; Andreassen, Ole A; ENIGMA-CNV Working Group; ENIGMA 22q11.2 Deletion Syndrome Working Group |
Human brain mapping |
33615640 |
2022 Jan |
| Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data. |
Vo, Tien; Mishra, Akshay; Ithapu, Vamsi; Singh, Vikas; Newton, Michael A |
Biostatistics (Oxford, England) |
33616173 |
2022 07 18 |
| Smoking Cessation Using Wearable Sensors: Protocol for a Microrandomized Trial. |
Hernandez, Laura M; Wetter, David W; Kumar, Santosh; Sutton, Steven K; Vinci, Christine |
JMIR research protocols |
33625366 |
2021 Feb 24 |
| Examination of the association between exposure to childhood maltreatment and brain structure in young adults: a machine learning analysis. |
Price, Matthew; Albaugh, Matthew; Hahn, Sage; Juliano, Anthony C; Fani, Negar; Brier, Zoe M F; Legrand, Alison C; van Stolk-Cooke, Katherine; Chaarani, Bader; Potter, Alexandra; Peck, Kelly; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology |
33637836 |
2021 10 |
| Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. |
Zhang, Jian; Lai, Pui Man Rosalind; Can, Anil; Mukundan, Srinivasan; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian S; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn N; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Scientific reports |
33637879 |
2021 02 26 |
| Prioritizing Genetic Contributors to Cortical Alterations in 22q11.2 Deletion Syndrome Using Imaging Transcriptomics. |
Forsyth, Jennifer K; Mennigen, Eva; Lin, Amy; Sun, Daqiang; Vajdi, Ariana; Kushan-Wells, Leila; Ching, Christopher R K; Villalon-Reina, Julio E; Thompson, Paul M; 22q11.2 ENIGMA Consortium; Bearden, Carrie E |
Cerebral cortex (New York, N.Y. : 1991) |
33638978 |
2021 06 10 |
| Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. |
Abrams, Zachary B; Tally, Dwayne G; Zhang, Lin; Coombes, Caitlin E; Payne, Philip R O; Abruzzo, Lynne V; Coombes, Kevin R |
BMC bioinformatics |
33648439 |
2021 Mar 01 |
| Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression. |
MahmoudianDehkordi, Siamak; Ahmed, Ahmed T; Bhattacharyya, Sudeepa; Han, Xianlin; Baillie, Rebecca A; Arnold, Matthias; Skime, Michelle K; John-Williams, Lisa St; Moseley, M Arthur; Thompson, J Will; Louie, Gregory; Riva-Posse, Patricio; Craighead, W Edward; McDonald, William; Krishnan, Ranga; Rush, A John; Frye, Mark A; Dunlop, Boadie W; Weinshilboum, Richard M; Kaddurah-Daouk, Rima; Mood Disorders Precision Medicine Consortium (MDPMC) |
Translational psychiatry |
33654056 |
2021 Mar 02 |
| Differential predictors for alcohol use in adolescents as a function of familial risk. |
Tschorn, Mira; Lorenz, Robert C; O'Reilly, Paul F; Reichenberg, Abraham; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Rapp, Michael A; IMAGEN Consortium |
Translational psychiatry |
33664233 |
2021 Mar 04 |
| Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals. |
Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin |
bioRxiv : the preprint server for biology |
33688643 |
2021 Mar 04 |
| The emerging clinical role of wearables: factors for successful implementation in healthcare. |
Smuck, Matthew; Odonkor, Charles A; Wilt, Jonathan K; Schmidt, Nicolas; Swiernik, Michael A |
NPJ digital medicine |
33692479 |
2021 Mar 10 |
| Unsupervised Word Embedding Learning by Incorporating Local and Global Contexts. |
Meng, Yu; Huang, Jiaxin; Wang, Guangyuan; Wang, Zihan; Zhang, Chao; Han, Jiawei |
Frontiers in big data |
33693384 |
2020 |
| Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. |
Bandeira, Nuno; Deutsch, Eric W; Kohlbacher, Oliver; Martens, Lennart; Vizcaíno, Juan Antonio |
Molecular & cellular proteomics : MCP |
33711481 |
2021 |
| Predicting future cognitive decline with hyperbolic stochastic coding. |
Zhang, Jie; Dong, Qunxi; Shi, Jie; Li, Qingyang; Stonnington, Cynthia M; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Medical image analysis |
33711742 |
2021 05 |
| Assessment of Extractability and Accuracy of Electronic Health Record Data for Joint Implant Registries. |
Giori, Nicholas J; Radin, John; Callahan, Alison; Fries, Jason A; Halilaj, Eni; Ré, Christopher; Delp, Scott L; Shah, Nigam H; Harris, Alex H S |
JAMA network open |
33720372 |
2021 03 01 |
| The role of maternal BMI on brain food cue reactivity in children: a preliminary study. |
Luo, Shan; Angelo, Brendan; Chow, Ting; Monterosso, John R; Xiang, Anny H; Thompson, Paul M; Page, Kathleen A |
Brain imaging and behavior |
33738669 |
2021 Mar 18 |
| Analysis of structural brain asymmetries in attention-deficit/hyperactivity disorder in 39 datasets. |
Postema, Merel C; Hoogman, Martine; Ambrosino, Sara; Asherson, Philip; Banaschewski, Tobias; Bandeira, Cibele E; Baranov, Alexandr; Bau, Claiton H D; Baumeister, Sarah; Baur-Streubel, Ramona; Bellgrove, Mark A; Biederman, Joseph; Bralten, Janita; Brandeis, Daniel; Brem, Silvia; Buitelaar, Jan K; Busatto, Geraldo F; Castellanos, Francisco X; Cercignani, Mara; Chaim-Avancini, Tiffany M; Chantiluke, Kaylita C; Christakou, Anastasia; Coghill, David; Conzelmann, Annette; Cubillo, Ana I; Cupertino, Renata B; de Zeeuw, Patrick; Doyle, Alysa E; Durston, Sarah; Earl, Eric A; Epstein, Jeffery N; Ethofer, Thomas; Fair, Damien A; Fallgatter, Andreas J; Faraone, Stephen V; Frodl, Thomas; Gabel, Matt C; Gogberashvili, Tinatin; Grevet, Eugenio H; Haavik, Jan; Harrison, Neil A; Hartman, Catharina A; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hohmann, Sarah; Høvik, Marie F; Jernigan, Terry L; Kardatzki, Bernd; Karkashadze, Georgii; Kelly, Clare; Kohls, Gregor; Konrad, Kerstin; Kuntsi, Jonna; Lazaro, Luisa; Lera-Miguel, Sara; Lesch, Klaus-Peter; Louza, Mario R; Lundervold, Astri J; Malpas, Charles B; Mattos, Paulo; McCarthy, Hazel; Namazova-Baranova, Leyla; Nicolau, Rosa; Nigg, Joel T; Novotny, Stephanie E; Oberwelland Weiss, Eileen; O'Gorman Tuura, Ruth L; Oosterlaan, Jaap; Oranje, Bob; Paloyelis, Yannis; Pauli, Paul; Picon, Felipe A; Plessen, Kerstin J; Ramos-Quiroga, J Antoni; Reif, Andreas; Reneman, Liesbeth; Rosa, Pedro G P; Rubia, Katya; Schrantee, Anouk; Schweren, Lizanne J S; Seitz, Jochen; Shaw, Philip; Silk, Tim J; Skokauskas, Norbert; Soliva Vila, Juan C; Stevens, Michael C; Sudre, Gustavo; Tamm, Leanne; Tovar-Moll, Fernanda; van Erp, Theo G M; Vance, Alasdair; Vilarroya, Oscar; Vives-Gilabert, Yolanda; von Polier, Georg G; Walitza, Susanne; Yoncheva, Yuliya N; Zanetti, Marcus V; Ziegler, Georg C; Glahn, David C; Jahanshad, Neda; Medland, Sarah E; ENIGMA ADHD Working Group; Thompson, Paul M; Fisher, Simon E; Franke, Barbara; Francks, Clyde |
Journal of child psychology and psychiatry, and allied disciplines |
33748971 |
2021 Oct |
| Predicting Depression Onset in Young People Based on Clinical, Cognitive, Environmental, and Neurobiological Data. |
Toenders, Yara J; Kottaram, Akhil; Dinga, Richard; Davey, Christopher G; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Stringaris, Argyris; van Noort, Betteke; Penttilä, Jani; Grimmer, Yvonne; Insensee, Corinna; Becker, Andreas; Schumann, Gunter; IMAGEN Consortium; Schmaal, Lianne |
Biological psychiatry. Cognitive neuroscience and neuroimaging |
33753312 |
2022 04 |
| A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen. |
Reales-Calderón, J A; Sun, Z; Mascaraque, V; Pérez-Navarro, E; Vialás, V; Deutsch, E W; Moritz, R L; Gil, C; Martínez, J L; Molero, G |
Journal of proteomics |
33757883 |
2021 05 15 |
| Selective morphological and volumetric alterations in the hippocampus of children exposed in utero to gestational diabetes mellitus. |
Lynch, Kirsten M; Alves, Jasmin M; Chow, Ting; Clark, Kristi A; Luo, Shan; Toga, Arthur W; Xiang, Anny H; Page, Kathleen A |
Human brain mapping |
33764653 |
2021 Mar 25 |
| Sex differences in neural correlates of common psychopathological symptoms in early adolescence. |
Biondo, Francesca; Thunell, Charlotte Nymberg; Xu, Bing; Chu, Congying; Jia, Tianye; Ing, Alex; Quinlan, Erin Burke; Tay, Nicole; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Lemaitre, Hervé; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium |
Psychological medicine |
33769238 |
2022 Oct |
| Characterizing neuroanatomic heterogeneity in people with and without ADHD based on subcortical brain volumes. |
Li, Ting; van Rooij, Daan; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA ADHD Working Group; Hoogman, Martine; Arias Vasquez, Alejandro; Franke, Barbara |
Journal of child psychology and psychiatry, and allied disciplines |
33786843 |
2021 Mar 30 |
| Interpreting Health Events in Big Data Using Qualitative Traditions. |
Fritz, Roschelle L; Dermody, Gordana |
International journal of qualitative methods |
33790703 |
2020 |
| Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images. |
Zhang, Jie; Wu, Jianfeng; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
IEEE transactions on medical imaging |
33798076 |
2021 08 |
| Structural and functional brain alterations revealed by neuroimaging in CNV carriers. |
Moreau, Clara A; Ching, Christopher Rk; Kumar, Kuldeep; Jacquemont, Sebastien; Bearden, Carrie E |
Current opinion in genetics & development |
33812299 |
2021 06 |
| Off-Policy Estimation of Long-Term Average Outcomes with Applications to Mobile Health. |
Liao, Peng; Klasnja, Predrag; Murphy, Susan |
Journal of the American Statistical Association |
33814653 |
2021 |
| Robust Cortical Thickness Morphometry of Neonatal Brain and Systematic Evaluation Using Multi-Site MRI Datasets. |
Liu, Mengting; Lepage, Claude; Kim, Sharon Y; Jeon, Seun; Kim, Sun Hyung; Simon, Julia Pia; Tanaka, Nina; Yuan, Shiyu; Islam, Tasfiya; Peng, Bailin; Arutyunyan, Knarik; Surento, Wesley; Kim, Justin; Jahanshad, Neda; Styner, Martin A; Toga, Arthur W; Barkovich, Anthony James; Xu, Duan; Evans, Alan C; Kim, Hosung |
Frontiers in neuroscience |
33815050 |
2021 |
| The interaction of child abuse and rs1360780 of the FKBP5 gene is associated with amygdala resting-state functional connectivity in young adults. |
Wesarg, Christiane; Veer, Ilya M; Oei, Nicole Y L; Daedelow, Laura S; Lett, Tristram A; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Heinz, Andreas; Walter, Henrik; IMAGEN Consortium |
Human brain mapping |
33818852 |
2021 Jul |
| Associations Between Exposure to Gestational Diabetes Mellitus In Utero and Daily Energy Intake, Brain Responses to Food Cues, and Adiposity in Children. |
Luo, Shan; Angelo, Brendan C; Chow, Ting; Monterosso, John R; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A |
Diabetes care |
33827804 |
2021 May |
| Artificial intelligence decision-making in mobile health. |
Menictas, Marianne; Rabbi, Mashfiqui; Klasnja, Predrag; Murphy, Susan |
The biochemist |
33828355 |
2019 Oct |
| Social Media Activism and Convergence in Tweet Topics After the Initial #MeToo Movement for Two Distinct Groups of Twitter Users. |
Baik, Jason M; Nyein, Thet H; Modrek, Sepideh |
Journal of interpersonal violence |
33840303 |
2021 Apr 12 |
| Large-Scale Analysis of Visualization Options in a Citizen Science Game. |
Miller, Josh Aaron; Lee, Vivian; Cooper, Seth; El-Nasr, Magy Seif |
Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play |
33860290 |
2019 Oct |
| Social cognition in 22q11.2 deletion syndrome and idiopathic developmental neuropsychiatric disorders. |
Jalal, Rhideeta; Nair, Aarti; Lin, Amy; Eckfeld, Ariel; Kushan, Leila; Zinberg, Jamie; Karlsgodt, Katherine H; Cannon, Tyrone D; Bearden, Carrie E |
Journal of neurodevelopmental disorders |
33863277 |
2021 04 17 |
| Association between body mass index and subcortical brain volumes in bipolar disorders-ENIGMA study in 2735 individuals. |
McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; van Haren, Neeltje E M; Gestel, Holly Van; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group |
Molecular psychiatry |
33863996 |
2021 Nov |
| THE STRATIFIED MICRO-RANDOMIZED TRIAL DESIGN: SAMPLE SIZE CONSIDERATIONS FOR TESTING NESTED CAUSAL EFFECTS OF TIME-VARYING TREATMENTS. |
Dempsey, Walter; Liao, Peng; Kumar, Santosh; Murphy, Susan A |
The annals of applied statistics |
33868539 |
2020 Jun |
| Geometric Brain Surface Network For Brain Cortical Parcellation. |
Zhang, Wen; Wang, Yalin |
Graph Learning in Medical Imaging : First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings |
33870335 |
2019 |
| A Full RNS Variant of Approximate Homomorphic Encryption. |
Cheon, Jung Hee; Han, Kyoohyung; Kim, Andrey; Kim, Miran; Song, Yongsoo |
Selected areas in cryptography : ... annual international workshop, SAC ... proceedings. SAC (Conference) |
33870337 |
2018 |
| Reward Processing in Novelty Seekers: A Transdiagnostic Psychiatric Imaging Biomarker. |
Qi, Shile; Schumann, Gunter; Bustillo, Juan; Turner, Jessica A; Jiang, Rongtao; Zhi, Dongmei; Fu, Zening; Mayer, Andrew R; Vergara, Victor M; Silva, Rogers F; Iraji, Armin; Chen, Jiayu; Damaraju, Eswar; Ma, Xiaohong; Yang, Xiao; Stevens, Michael; Mathalon, Daniel H; Ford, Judith M; Voyvodic, James; Mueller, Bryon A; Belger, Aysenil; Potkin, Steven G; Preda, Adrian; Zhuo, Chuanjun; Xu, Yong; Chu, Congying; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Calhoun, Vince D; Sui, Jing; IMAGEN Consortium |
Biological psychiatry |
33875230 |
2021 Oct 15 |
| Automatable Distributed Regression Analysis of Vertically Partitioned Data Facilitated by PopMedNet: Feasibility and Enhancement Study. |
Her, Qoua; Kent, Thomas; Samizo, Yuji; Slavkovic, Aleksandra; Vilk, Yury; Toh, Sengwee |
JMIR medical informatics |
33890866 |
2021 Apr 23 |
| Altered regional cerebral blood flow in obstructive sleep apnea is associated with sleep fragmentation and oxygen desaturation. |
Yan, Lirong; Park, Hea Ree; Kezirian, Eric J; Yook, Soonhyun; Kim, Jae-Hun; Joo, Eun Yeon; Kim, Hosung |
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism |
33906511 |
2021 10 |
| Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease. |
Dong, Qunxi; Zhang, Jie; Li, Qingyang; Thompson, Pau M; Caselli, Richard J; Ye, Jieping; Wang, Yalin; Alzheimers Disease Neuroimaging Initiative |
Human brain and artificial intelligence : first International Workshop, HBAI 2019, held in conjunction with IJCAI 2019, Macao, China, August 12, 2019, revised selected papers. HBAI (Conference) (1st : 2019 : Macau, China) |
33907742 |
2019 |
| Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. |
Gau, Rémi; Noble, Stephanie; Heuer, Katja; Bottenhorn, Katherine L; Bilgin, Isil P; Yang, Yu-Fang; Huntenburg, Julia M; Bayer, Johanna M M; Bethlehem, Richard A I; Rhoads, Shawn A; Vogelbacher, Christoph; Borghesani, Valentina; Levitis, Elizabeth; Wang, Hao-Ting; Van Den Bossche, Sofie; Kobeleva, Xenia; Legarreta, Jon Haitz; Guay, Samuel; Atay, Selim Melvin; Varoquaux, Gael P; Huijser, Dorien C; Sandström, Malin S; Herholz, Peer; Nastase, Samuel A; Badhwar, AmanPreet; Dumas, Guillaume; Schwab, Simon; Moia, Stefano; Dayan, Michael; Bassil, Yasmine; Brooks, Paula P; Mancini, Matteo; Shine, James M; O'Connor, David; Xie, Xihe; Poggiali, Davide; Friedrich, Patrick; Heinsfeld, Anibal S; Riedl, Lydia; Toro, Roberto; Caballero-Gaudes, César; Eklund, Anders; Garner, Kelly G; Nolan, Christopher R; Demeter, Damion V; Barrios, Fernando A; Merchant, Junaid S; McDevitt, Elizabeth A; Oostenveld, Robert; Craddock, R Cameron; Rokem, Ariel; Doyle, Andrew; Ghosh, Satrajit S; Nikolaidis, Aki; Stanley, Olivia W; Uruñuela, Eneko; Brainhack Community |
Neuron |
33932337 |
2021 06 02 |
| Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. |
Brown, Katherine A; Sarkar, Indra Neil; Chen, Elizabeth S |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
33936398 |
2020 |
| Patient-Specific Modeling with Personalized Decision Paths. |
Johnson, Adriana; Cooper, Gregory F; Visweswaran, Shyam |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
33936434 |
2020 |
| Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable. |
Solbrig, Harold R; Solbrig, Harold R; Prud'hommeaux, Eric; Booth, David; Endle, Cory M; Stone, Daniel J; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
33936490 |
2020 |
| The digital biomarker discovery pipeline: An open-source software platform for the development of digital biomarkers using mHealth and wearables data. |
Bent, Brinnae; Wang, Ke; Grzesiak, Emilia; Jiang, Chentian; Qi, Yuankai; Jiang, Yihang; Cho, Peter; Zingler, Kyle; Ogbeide, Felix Ikponmwosa; Zhao, Arthur; Runge, Ryan; Sim, Ida; Dunn, Jessilyn |
Journal of clinical and translational science |
33948242 |
2020 Jul 14 |
| Sex is a defining feature of neuroimaging phenotypes in major brain disorders. |
Salminen, Lauren E; Tubi, Meral A; Bright, Joanna; Thomopoulos, Sophia I; Wieand, Alyssa; Thompson, Paul M |
Human brain mapping |
33949018 |
2021 May 05 |
| A high-quality bonobo genome refines the analysis of hominid evolution. |
Mao, Yafei; Catacchio, Claudia R; Hillier, LaDeana W; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D; Montinaro, Francesco; Gordon, David S; Storer, Jessica M; Haukness, Marina; Fiddes, Ian T; Murali, Shwetha Canchi; Dishuck, Philip C; Hsieh, PingHsun; Harvey, William T; Audano, Peter A; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M; Lewis, Alexandra P; Baker, Carl; Underwood, Jason G; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R; Pang, Andy W C; Lee, Joyce; Hastie, Alex R; Paten, Benedict; Batzer, Mark A; Diekhans, Mark; Ventura, Mario; Eichler, Evan E |
Nature |
33953399 |
2021 May 05 |
| White matter hyperintensities segmentation using the ensemble U-Net with multi-scale highlighting foregrounds. |
Park, Gilsoon; Hong, Jinwoo; Duffy, Ben A; Lee, Jong-Min; Kim, Hosung |
NeuroImage |
33957235 |
2021 08 15 |
| Endocannabinoid Gene × Gene Interaction Association to Alcohol Use Disorder in Two Adolescent Cohorts. |
Elkrief, Laurent; Spinney, Sean; Vosberg, Daniel E; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš; Huguet, Guillaume; Conrod, Patricia; IMAGEN consortium |
Frontiers in psychiatry |
33959052 |
2021 |
| fMRI-based detection of alertness predicts behavioral response variability. |
Goodale, Sarah E; Ahmed, Nafis; Zhao, Chong; de Zwart, Jacco A; Özbay, Pinar S; Picchioni, Dante; Duyn, Jeff; Englot, Dario J; Morgan, Victoria L; Chang, Catie |
eLife |
33960930 |
2021 May 07 |
| Three-dimensional self-attention conditional GAN with spectral normalization for multimodal neuroimaging synthesis. |
Lan, Haoyu; Alzheimer Disease Neuroimaging Initiative; Toga, Arthur W; Sepehrband, Farshid |
Magnetic resonance in medicine |
33961321 |
2021 09 |
| The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. |
Yuen, Denis; Cabansay, Louise; Duncan, Andrew; Luu, Gary; Hogue, Gregory; Overbeck, Charles; Perez, Natalie; Shands, Walt; Steinberg, David; Reid, Chaz; Olunwa, Nneka; Hansen, Richard; Sheets, Elizabeth; O'Farrell, Ash; Cullion, Kim; O'Connor, Brian D; Paten, Benedict; Stein, Lincoln |
Nucleic acids research |
33978761 |
2021 07 02 |
| Interaction of amyloid and tau on cortical microstructure in cognitively unimpaired adults. |
Vogt, Nicholas M; Hunt, Jack F V; Adluru, Nagesh; Ma, Yue; Van Hulle, Carol A; Iii, Douglas C Dean; Kecskemeti, Steven R; Chin, Nathaniel A; Carlsson, Cynthia M; Asthana, Sanjay; Johnson, Sterling C; Kollmorgen, Gwendlyn; Batrla, Richard; Wild, Norbert; Buck, Katharina; Zetterberg, Henrik; Alexander, Andrew L; Blennow, Kaj; Bendlin, Barbara B |
Alzheimer's & dementia : the journal of the Alzheimer's Association |
33984184 |
2021 May 13 |
| Mobile Health: making the leap to research and clinics. |
Ku, Joy P; Sim, Ida |
NPJ digital medicine |
33990671 |
2021 May 14 |
| Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravel Antibacterial Resistance in East Africa (HATUA). |
Asiimwe, Benon B; Kiiru, John; Mshana, Stephen E; Neema, Stella; Keenan, Katherine; Kesby, Mike; Mwanga, Joseph R; Sloan, Derek J; Mmbaga, Blandina T; Smith, V Anne; Gillespie, Stephen H; Lynch, Andy G; Sandeman, Alison; Stelling, John; Elliott, Alison; Aanensen, David M; Kibiki, Gibson E; Sabiiti, Wilber; Holden, Matthew T G; HATUA Consortium |
BMJ open |
34006022 |
2021 03 08 |
| Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain? |
van Eijk, Liza; Zietsch, Brendan P |
Autism research : official journal of the International Society for Autism Research |
34008924 |
2021 08 |
| TEMPORALLY ADAPTIVE-DYNAMIC SPARSE NETWORK FOR MODELING DISEASE PROGRESSION. |
Zhang, Jie; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging |
34012506 |
2020 Apr |
| The SistematX Web Portal of Natural Products: An Update. |
Costa, Renan P O; Lucena, Lucas F; Silva, Lorena Mara A; Zocolo, Guilherme Julião; Herrera-Acevedo, Chonny; Scotti, Luciana; Da-Costa, Fernando Batista; Ionov, Nikita; Poroikov, Vladimir; Muratov, Eugene N; Scotti, Marcus T |
Journal of chemical information and modeling |
34014674 |
2021 06 28 |
| Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation. |
Liang, Dan; Elwell, Angela L; Aygün, Nil; Krupa, Oleh; Wolter, Justin M; Kyere, Felix A; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Yusupova, Marianna; Garrett, Melanie E; Ashley-Koch, Allison; Crawford, Gregory E; Love, Michael I; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Stein, Jason L |
Nature neuroscience |
34017130 |
2021 Jul |
| Morphological Development Trajectory and Structural Covariance Network of the Human Fetal Cortical Plate during the Early Second Trimester. |
Xu, Feifei; Liu, Mengting; Kim, Sharon Y; Ge, Xinting; Zhang, Zhonghe; Tang, Yuchun; Lin, Xiangtao; Toga, Arthur W; Liu, Shuwei; Kim, Hosung |
Cerebral cortex (New York, N.Y. : 1991) |
34017979 |
2021 08 26 |
| KEA3: improved kinase enrichment analysis via data integration. |
Kuleshov, Maxim V; Xie, Zhuorui; London, Alexandra B K; Yang, Janice; Evangelista, John Erol; Lachmann, Alexander; Shu, Ingrid; Torre, Denis; Ma'ayan, Avi |
Nucleic acids research |
34019655 |
2021 07 02 |
| What Does the Evidence Say? Models to Help Make Sense of the Biomedical Literature. |
Wallace, Byron C |
IJCAI : proceedings of the conference |
34025086 |
2019 Aug |
| Wearable sensors enable personalized predictions of clinical laboratory measurements. |
Dunn, Jessilyn; Kidzinski, Lukasz; Runge, Ryan; Witt, Daniel; Hicks, Jennifer L; Schüssler-Fiorenza Rose, Sophia Miryam; Li, Xiao; Bahmani, Amir; Delp, Scott L; Hastie, Trevor; Snyder, Michael P |
Nature medicine |
34031607 |
2021 Jun |
| Interaction Between SNP Genotype and Efficacy of Anastrozole and Exemestane in Early-Stage Breast Cancer. |
Cairns, Junmei; Kalari, Krishna R; Ingle, James N; Shepherd, Lois E; Ellis, Matthew J; Goss, Paul E; Barman, Poulami; Carlson, Erin E; Goodnature, Barbara; Goetz, Matthew P; Weinshilboum, Richard M; Gao, Huanyao; Wang, Liewei |
Clinical pharmacology and therapeutics |
34048027 |
2021 May 28 |
| Fibroblasts positive for meflin have anti-fibrotic properties in pulmonary fibrosis. |
Nakahara, Yoshio; Hashimoto, Naozumi; Sakamoto, Koji; Enomoto, Atsushi; Adams, Taylor S; Yokoi, Toyoharu; Omote, Norihito; Poli, Sergio; Ando, Akira; Wakahara, Keiko; Suzuki, Atsushi; Inoue, Masahide; Hara, Akitoshi; Mizutani, Yasuyuki; Imaizumi, Kazuyoshi; Kawabe, Tsutomu; Rosas, Ivan O; Takahashi, Masahide; Kaminski, Naftali; Hasegawa, Yoshinori |
The European respiratory journal |
34049947 |
2021 12 |
| Rare variants regulate expression of nearby individual genes in multiple tissues. |
Li, Jiajin; Kong, Nahyun; Han, Buhm; Sul, Jae Hoon |
PLoS genetics |
34061836 |
2021 06 |
| Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014. |
Jamoralin Jr, Manuel C; Argimón, Silvia; Lagrada, Marietta L; Villamin, Alfred S; Masim, Melissa L; Gayeta, June M; Boehme, Karis D; Olorosa, Agnettah M; Sia, Sonia B; Hufano, Charmian M; Cohen, Victoria; Hernandez, Lara T; Jeffrey, Benjamin; Abudahab, Khalil; Stelling, John; Holden, Matthew T G; Aanensenb, David M; e,*; Carlosa, Celia C; Philippines Antimicrobial Resistance Surveillance Program |
Western Pacific surveillance and response journal : WPSAR |
34094619 |
2021 |
| Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization Offers Significant Performance and Efficiency Gains. |
Ravi, Sathya N; Venkatesh, Abhay; Fung, Glenn M; Singh, Vikas |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence |
34094697 |
2020 Jun 16 |
| Multimodal EEG-fMRI: advancing insight into large-scale human brain dynamics. |
Chang, Catie; Chen, Jingyuan E |
Current opinion in biomedical engineering |
34095643 |
2021 Jun |
| Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging. |
Ning, Kaida; Duffy, Ben A; Franklin, Meredith; Matloff, Will; Zhao, Lu; Arzouni, Nibal; Sun, Fengzhu; Toga, Arthur W |
Neurobiology of aging |
34098431 |
2021 09 |
| Automated Detection of Stressful Conversations Using Wearable Physiological and Inertial Sensors. |
Bari, Rummana; Rahman, Md Mahbubur; Saleheen, Nazir; Parsons, Megan Battles; Buder, Eugene H; Kumar, Santosh |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies |
34099995 |
2020 Dec |
| Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses. |
Moon, Changsung; Jin, Chunming; Dong, Xialan; Abrar, Saad; Zheng, Weifan; Chirkova, Rada Y; Tropsha, Alexander |
Journal of biomedical informatics |
34119691 |
2021 07 |
| Lessons Learned for Identifying and Annotating Permissions in Clinical Consent Forms. |
Umberfield, Elizabeth E; Jiang, Yun; Fenton, Susan H; Stansbury, Cooper; Ford, Kathleen; Crist, Kaycee; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R |
Applied clinical informatics |
34161986 |
2021 05 |
| ReVibe: A Context-assisted Evening Recall Approach to Improve Self-report Adherence. |
Rabbi, Mashfiqui; Li, Katherine; Yan, H Yanna; Hall, Kelly; Klasnja, Predrag; Murphy, Susan |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies |
34164595 |
2019 Dec |
| Brain Correlates of Suicide Attempt in 18,925 Participants Across 18 International Cohorts. |
Campos, Adrian I; Thompson, Paul M; Veltman, Dick J; Pozzi, Elena; van Veltzen, Laura S; Jahanshad, Neda; Adams, Mark J; Baune, Bernhard T; Berger, Klaus; Brosch, Katharina; Bülow, Robin; Connolly, Colm G; Dannlowski, Udo; Davey, Christopher G; de Zubicaray, Greig I; Dima, Danai; Erwin-Grabner, Tracy; Evans, Jennifer W; Fu, Cynthia H Y; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans J; Grotegerd, Dominik; Harris, Matthew A; Harrison, Ben J; Hatton, Sean N; Hermesdorf, Marco; Hickie, Ian B; Ho, Tiffany C; Kircher, Tilo; Krug, Axel; Lagopoulos, Jim; Lemke, Hannah; McMahon, Katie; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; Medland, Sarah E; Meinert, Susanne; Meller, Tina; Nenadic, Igor; Opel, Nils; Redlich, Ronny; Reneman, Liesbeth; Repple, Jonathan; Sacchet, Matthew D; Schmitt, Simon; Schrantee, Anouk; Sim, Kang; Singh, Aditya; Stein, Frederike; Strike, Lachlan T; van der Wee, Nic J A; van der Werff, Steven J A; Völzke, Henry; Waltemate, Lena; Whalley, Heather C; Wittfeld, Katharina; Wright, Margaret J; Yang, Tony T; Zarate, Carlos A; Schmaal, Lianne; Rentería, Miguel E; ENIGMA-MDD Working Group |
Biological psychiatry |
34172278 |
2021 08 15 |
| Universal Spectrum Identifier for mass spectra. |
Deutsch, Eric W; Perez-Riverol, Yasset; Carver, Jeremy; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Binz, Pierre-Alain; Pullman, Benjamin; Sun, Zhi; Shofstahl, Jim; Bittremieux, Wout; Mak, Tytus D; Klein, Joshua; Zhu, Yunping; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, Nuno |
Nature methods |
34183830 |
2021 Jul |
| The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. |
Larivière, Sara; Paquola, Casey; Park, Bo-Yong; Royer, Jessica; Wang, Yezhou; Benkarim, Oualid; Vos de Wael, Reinder; Valk, Sofie L; Thomopoulos, Sophia I; Kirschner, Matthias; Lewis, Lindsay B; Evans, Alan C; Sisodiya, Sanjay M; McDonald, Carrie R; Thompson, Paul M; Bernhardt, Boris C |
Nature methods |
34194050 |
2021 Jul |
| A critical overview of computational approaches employed for COVID-19 drug discovery. |
Muratov , Eugene N; Amaro , Rommie; Andrade , Carolina H; Brown , Nathan; Ekins , Sean; Fourches , Denis; Isayev , Olexandr; Kozakov , Dima; Medina-Franco , José L; Merz , Kenneth M; Oprea , Tudor I; Poroikov , Vladimir; Schneider , Gisbert; Todd , Matthew H; Varnek , Alexandre; Winkler , David A; Zakharov , Alexey V; Cherkasov , Artem; Tropsha , Alexander |
Chemical Society reviews |
34212944 |
2021 Aug 21 |
| Regulations and Norms for Reuse of Residual Clinical Biospecimens and Health Data. |
Umberfield, Elizabeth E; Kardia, Sharon L R; Jiang, Yun; Thomer, Andrea K; Harris, Marcelline R |
Western journal of nursing research |
34238076 |
2021 Jul 08 |
| Causal Inference Gates Corticostriatal Learning. |
Dorfman, Hayley M; Tomov, Momchil S; Cheung, Bernice; Clarke, Dennis; Gershman, Samuel J; Hughes, Brent L |
The Journal of neuroscience : the official journal of the Society for Neuroscience |
34244363 |
2021 Aug 11 |
| Quick-start infrastructure for untargeted metabolomics analysis in GNPS. |
Leao, Tiago F; Clark, Chase M; Bauermeister, Anelize; Elijah, Emmanuel O; Gentry, Emily C; Husband, Makhai; Oliveira, Michelli F; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C |
Nature metabolism |
34244695 |
2021 07 |
| Standardization of assay representation in the Ontology for Biomedical Investigations. |
Vita, Randi; Zheng, Jie; Jackson, Rebecca; Dooley, Damion; Overton, James A; Miller, Mark A; Berrios, Daniel C; Scheuermann, Richard H; He, Yongqun; McGinty, Hande Küçük; Brochhausen, Mathias; Lin, Aisyah Yu; Jain, Sagar B; Chibucos, Marcus C; Judkins, John; Giglio, Michelle G; Feng, Irene Y; Burns, Gully; Brush, Matthew H; Peters, Bjoern; Stoeckert Jr, Christian J |
Database : the journal of biological databases and curation |
34244718 |
2021 07 09 |
| Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals. |
Xing, Jing; Paithankar, Shreya; Liu, Ke; Uhl, Katie; Li, Xiaopeng; Ko, Meehyun; Kim, Seungtaek; Haskins, Jeremy; Chen, Bin |
Briefings in bioinformatics |
34245241 |
2021 Jul 09 |
| Haplotype-based membership inference from summary genomic data. |
Bu, Diyue; Wang, Xiaofeng; Tang, Haixu |
Bioinformatics (Oxford, England) |
34252973 |
2021 07 12 |
| Sensing leg movement enhances wearable monitoring of energy expenditure. |
Slade, Patrick; Kochenderfer, Mykel J; Delp, Scott L; Collins, Steven H |
Nature communications |
34257310 |
2021 07 13 |
| FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. |
Levinson, Maxwell Adam; Niestroy, Justin; Al Manir, Sadnan; Fairchild, Karen; Lake, Douglas E; Moorman, J Randall; Clark, Timothy |
Neuroinformatics |
34264488 |
2021 Jul 15 |
| Effects of eight neuropsychiatric copy number variants on human brain structure. |
Modenato, Claudia; Kumar, Kuldeep; Moreau, Clara; Martin-Brevet, Sandra; Huguet, Guillaume; Schramm, Catherine; Jean-Louis, Martineau; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Douard, Elise; Thébault-Dagher, Fanny; Côté, Valérie; Charlebois, Audrey-Rose; Deguire, Florence; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; 16p11.2 European Consortium; Simons Searchlight Consortium; Melie-Garcia, Lester; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Chakravarty, Mallar; Bzdok, Danilo; Bearden, Carrie E; Draganski, Bogdan; Jacquemont, Sébastien |
Translational psychiatry |
34285187 |
2021 07 20 |
| International Multicenter Analysis of Brain Structure Across Clinical Stages of Parkinson's Disease. |
Laansma, Max A; Bright, Joanna K; Al-Bachari, Sarah; Anderson, Tim J; Ard, Tyler; Assogna, Francesca; Baquero, Katherine A; Berendse, Henk W; Blair, Jamie; Cendes, Fernando; Dalrymple-Alford, John C; de Bie, Rob M A; Debove, Ines; Dirkx, Michiel F; Druzgal, Jason; Emsley, Hedley C A; Garraux, Gäetan; Guimarães, Rachel P; Gutman, Boris A; Helmich, Rick C; Klein, Johannes C; Mackay, Clare E; McMillan, Corey T; Melzer, Tracy R; Parkes, Laura M; Piras, Fabrizio; Pitcher, Toni L; Poston, Kathleen L; Rango, Mario; Ribeiro, Letícia F; Rocha, Cristiane S; Rummel, Christian; Santos, Lucas S R; Schmidt, Reinhold; Schwingenschuh, Petra; Spalletta, Gianfranco; Squarcina, Letizia; van den Heuvel, Odile A; Vriend, Chris; Wang, Jiun-Jie; Weintraub, Daniel; Wiest, Roland; Yasuda, Clarissa L; Jahanshad, Neda; Thompson, Paul M; van der Werf, Ysbrand D; ENIGMA-Parkinson's Study |
Movement disorders : official journal of the Movement Disorder Society |
34288137 |
2021 Nov |
| Large-scale collaboration in ENIGMA-EEG: A perspective on the meta-analytic approach to link neurological and psychiatric liability genes to electrophysiological brain activity. |
Smit, Dirk J A; Andreassen, Ole A; Boomsma, Dorret I; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Elvsåshagen, Torbjørn; Gordon, Reyna L; Harper, Jeremy; Hegerl, Ulrich; Hensch, Tilman; Iacono, William G; Jawinski, Philippe; Jönsson, Erik G; Lu |
Brain and behavior |
34291596 |
2021 08 |
| The mobile assistance for regulating smoking (MARS) micro-randomized trial design protocol. |
Nahum-Shani, Inbal; Potter, Lindsey N; Lam, Cho Y; Yap, Jamie; Moreno, Alexander; Stoffel, Rebecca; Wu, Zhenke; Wan, Neng; Dempsey, Walter; Kumar, Santosh; Ertin, Emre; Murphy, Susan A; Rehg, James M; Wetter, David W |
Contemporary clinical trials |
34314855 |
2021 11 |
| Are Sex Differences in Human Brain Structure Associated With Sex Differences in Behavior? |
van Eijk, Liza; Zhu, Dajiang; Couvy-Duchesne, Baptiste; Strike, Lachlan T; Lee, Anthony J; Hansell, Narelle K; Thompson, Paul M; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J; Zietsch, Brendan P |
Psychological science |
34323639 |
2021 08 |
| A Survey of Unsupervised Deep Domain Adaptation. |
Wilson, Garrett; Cook, Diane J |
ACM transactions on intelligent systems and technology |
34336374 |
2020 Sep |
| Indirectly-Supervised Anomaly Detection of Clinically-Meaningful Health Events from Smart Home Data. |
Dahmen, Jessamyn; Cook, Diane J |
ACM transactions on intelligent systems and technology |
34336375 |
2021 Mar |
| Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study. |
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NeuroImage. Clinical |
34339947 |
2021 |
| Inferring and Comparing Game Difficulty Curves using Player-vs-Level Match Data. |
Sarkar, Anurag; Cooper, Seth |
IEEE Conference on Games 2019 : London, United Kingdom, 20-23 August 2019 |
34355222 |
2019 Aug |
| Testing the effectiveness of community-engaged citizen science to promote physical activity, foster healthier neighborhood environments, and advance health equity in vulnerable communities: The Steps for Change randomized controlled trial design and metho |
King, Abby C; Campero, Maria I; Garcia, Dulce; Blanco-Velazquez, Isela; Banchoff, Ann; Fierros, Fernando; Escobar, Michele; Cortes, Ana L; Sheats, Jylana L; Hua, Jenna; Chazaro, Aldo; Done, Monica; Espinosa, Patricia Rodriguez; Vuong, Daniel; Ahn, David K |
Contemporary clinical trials |
34371162 |
2021 Sep |
| Sense2Stop: A micro-randomized trial using wearable sensors to optimize a just-in-time-adaptive stress management intervention for smoking relapse prevention. |
Battalio, Samuel L; Conroy, David E; Dempsey, Walter; Liao, Peng; Menictas, Marianne; Murphy, Susan; Nahum-Shani, Inbal; Qian, Tianchen; Kumar, Santosh; Spring, Bonnie |
Contemporary clinical trials |
34375749 |
2021 10 |
| Continually Modeling Alzheimer's Disease Progression via Deep Multi-Order Preserving Weight Consolidation. |
Zhang, Jie; Wang, Yalin |
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention |
34378008 |
2019 Oct |
| A merged microarray meta-dataset for transcriptionally profiling colorectal neoplasm formation and progression. |
Rohr, Michael; Beardsley, Jordan; Nakkina, Sai Preethi; Zhu, Xiang; Aljabban, Jihad; Hadley, Dexter; Altomare, Deborah |
Scientific data |
34381057 |
2021 Aug 11 |
| A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies. |
Altmann, Andre; Ryten, Mina; Di Nunzio, Martina; Ravizza, Teresa; Tolomeo, Daniele; Reynolds, Regina H; Somani, Alyma; Bacigaluppi, Marco; Iori, Valentina; Micotti, Edoardo; Di Sapia, Rossella; Cerovic, Milica; Palma, Eleonora; Ruffolo, Gabriele; Botía, Juan A; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bargallo, Nuria; Bartolini, Emanuele; Bender, Benjamin; Bergo, Felipe P G; Bernardes, Tauana; Bernasconi, Andrea; Bernasconi, Neda; Bernhardt, Boris C; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carlson, Chad; Carr, Sarah J A; Cavalleri, Gianpiero L; Cendes, Fernando; Chen, Jian; Chen, Shuai; Cherubini, Andrea; Concha, Luis; David, Philippe; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Domin, Martin; Focke, Niels K; Foley, Sonya; Franca, Wendy; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Hibar, Derrek P; Isaev, Dmitry; Jackson, Graeme D; Jahanshad, Neda; Kälviäinen, Reetta; Keller, Simon S; Kochunov, Peter; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Kwan, Patrick; Labate, Angelo; Langner, Soenke; Lenge, Matteo; Liu, Min; Martin, Pascal; Mascalchi, Mario; Meletti, Stefano; Morita-Sherman, Marcia E; O'Brien, Terence J; Pariente, Jose C; Richardson, Mark P; Rodriguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Striano, Pasquale; Thesen, Thomas; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Wiest, Roland; Yasuda, Clarissa L; Zhang, Guohao; Zhang, Junsong; ENIGMA-Epilepsy Working Group; Leu, Costin; Avbersek, Andreja; EpiPGX Consortium; Thom, Maria; Whelan, Christopher D; Thompson, Paul; McDonald, Carrie R; Vezzani, Annamaria; Sisodiya, Sanjay M |
Neuropathology and applied neurobiology |
34388852 |
2022 02 |
| Deep reinforcement learning for modeling human locomotion control in neuromechanical simulation. |
Song, Seungmoon; Kidziński, Łukasz; Peng, Xue Bin; Ong, Carmichael; Hicks, Jennifer; Levine, Sergey; Atkeson, Christopher G; Delp, Scott L |
Journal of neuroengineering and rehabilitation |
34399772 |
2021 08 16 |
| Learning Invariant Representations using Inverse Contrastive Loss. |
Akash, Aditya Kumar; Lokhande, Vishnu Suresh; Ravi, Sathya N; Singh, Vikas |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence |
34405058 |
2021 Feb |
| Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. |
Gutiérrez-Sacristán, Alba; Sáez, Carlos; De Niz, Carlos; Jalali, Niloofar; DeSain, Thomas N; Kumar, Ranjay; Zachariasse, Joany M; Fox, Kathe P; Palmer, Nathan; Kohane, Isaac; Avillach, Paul |
Journal of the American Medical Informatics Association : JAMIA |
34405856 |
2022 Jan 12 |
| Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. |
Aygün, Nil; Elwell, Angela L; Liang, Dan; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Mory, Jessica; Hadden-Ford, Ellie; Krupa, Oleh; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Love, Michael I; Stein, Jason L |
American journal of human genetics |
34416157 |
2021 09 02 |
| INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. |
Dong, Chenyang; Simonett, Shane P; Shin, Sunyoung; Stapleton, Donnie S; Schueler, Kathryn L; Churchill, Gary A; Lu, Leina; Liu, Xiaoxiao; Jin, Fulai; Li, Yan; Attie, Alan D; Keller, Mark P; Keleş, Sündüz |
Genome biology |
34425882 |
2021 08 23 |
| Brain Structure and Degeneration Staging in Friedreich Ataxia: Magnetic Resonance Imaging Volumetrics from the ENIGMA-Ataxia Working Group. |
Harding, Ian H; Chopra, Sidhant; Arrigoni, Filippo; Boesch, Sylvia; Brunetti, Arturo; Cocozza, Sirio; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Diciotti, Stefano; Dogan, Imis; Evangelisti, Stefania; França Jr, Marcondes C; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Gramegna, Laura L; Henry, Pierre-Gilles; Hernandez-Castillo, Carlos R; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lodi, Raffaele; Manners, David N; Martinez, Alberto R M; Martinuzzi, Andrea; Marzi, Chiara; Mascalchi, Mario; Nachbauer, Wolfgang; Pane, Chiara; Peruzzo, Denis; Pisharady, Pramod K; Pontillo, Giuseppe; Reetz, Kathrin; Rezende, Thiago J R; Romanzetti, Sandro; Saccà, Francesco; Scherfler, Christoph; Schulz, Jörg B; Stefani, Ambra; Testa, Claudia; Thomopoulos, Sophia I; Timmann, Dagmar; Tirelli, Stefania; Tonon, Caterina; Vavla, Marinela; Egan, Gary F; Thompson, Paul M |
Annals of neurology |
34435700 |
2021 10 |
| Self-reported oil spill exposure and birth outcomes among southern Louisiana women at the time of the Gulf oil spill: The GROWH study. |
Harville, Emily W; Shankar, Arti; Buekens, Pierre; Wickliffe, Jeffrey K; Lichtveld, Maureen Y |
International journal of hygiene and environmental health |
34450543 |
2021 Aug |
| Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. |
Liu, Sijia; Luo, Yuan; Stone, Daniel; Zong, Nansu; Wen, Andrew; Yu, Yue; Rasmussen, Luke V; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
34457156 |
2021 |
| CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. |
Wen, Andrew; Rasmussen, Luke V; Stone, Daniel; Liu, Sijia; Kiefer, Rick; Adekkanattu, Prakash; Brandt, Pascal S; Pacheco, Jennifer A; Luo, Yuan; Wang, Fei; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium |
34457178 |
2021 |
| Signaligner Pro: A Tool to Explore and Annotate Multi-day Raw Accelerometer Data. |
Ponnada, Aditya; Cooper, Seth; Tang, Qu; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen |
Proceedings of the ... IEEE International Conference on Pervasive Computing and Communications. IEEE International Conference on Pervasive Computing and Communications |
34458663 |
2021 Mar |
| Physarum Powered Differentiable Linear Programming Layers and Applications. |
Meng, Zihang; Ravi, Sathya N; Singh, Vikas |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence |
34484857 |
2021 Feb |
| Open Source Software for Automatic Subregional Assessment of Knee Cartilage Degradation Using Quantitative T2 Relaxometry and Deep Learning. |
Thomas, Kevin A; Krzemiński, Dominik; Kidziński, Łukasz; Paul, Rohan; Rubin, Elka B; Halilaj, Eni; Black, Marianne S; Chaudhari, Akshay; Gold, Garry E; Delp, Scott L |
Cartilage |
34496667 |
2021 12 |
| A meta-analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium. |
Gutman, Boris A; van Erp, Theo G M; Alpert, Kathryn; Ching, Christopher R K; Isaev, Dmitry; Ragothaman, Anjani; Jahanshad, Neda; Saremi, Arvin; Zavaliangos-Petropulu, Artemis; Glahn, David C; Shen, Li; Cong, Shan; Alnaes, Dag; Andreassen, Ole Andreas; Doan, Nhat Trung; Westlye, Lars T; Kochunov, Peter; Satterthwaite, Theodore D; Wolf, Daniel H; Huang, Alexander J; Kessler, Charles; Weideman, Andrea; Nguyen, Dana; Mueller, Bryon A; Faziola, Lawrence; Potkin, Steven G; Preda, Adrian; Mathalon, Daniel H; Bustillo, Juan; Calhoun, Vince; Ford, Judith M; Walton, Esther; Ehrlich, Stefan; Ducci, Giuseppe; Banaj, Nerisa; Piras, Fabrizio; Piras, Federica; Spalletta, Gianfranco; Canales-Rodríguez, Erick J; Fuentes-Claramonte, Paola; Pomarol-Clotet, Edith; Radua, Joaquim; Salvador, Raymond; Sarró, Salvador; Dickie, Erin W; Voineskos, Aristotle; Tordesillas-Gutiérrez, Diana; Crespo-Facorro, Benedicto; Setién-Suero, Esther; van Son, Jacqueline Mayoral; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Morris, Derek; Donohoe, Gary; Holleran, Laurena; Cannon, Dara; McDonald, Colm; Corvin, Aiden; Gill, Michael; Filho, Geraldo Busatto; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Lebedeva, Irina; Kaleda, Vasily; Tomyshev, Alexander; Crow, Tim; James, Anthony; Cervenka, Simon; Sellgren, Carl M; Fatouros-Bergman, Helena; Agartz, Ingrid; Howells, Fleur; Stein, Dan J; Temmingh, Henk; Uhlmann, Anne; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margie; Cobia, Derin; Csernansky, John G; Thompson, Paul M; Turner, Jessica A; Wang, Lei |
Human brain mapping |
34498337 |
2022 Jan |
| Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences. |
Zhan, Lingyu; Li, Jiajin; Jew, Brandon; Sul, Jae Hoon |
PLoS genetics |
34516545 |
2021 Sep |
| Personalized HeartSteps: A Reinforcement Learning Algorithm for Optimizing Physical Activity. |
Liao, Peng; Greenewald, Kristjan; Klasnja, Predrag; Murphy, Susan |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies |
34527853 |
2020 Mar |
| Multiethnic genome-wide and HLA association study of total serum IgE level. |
Daya, Michelle; Cox, Corey; Acevedo, Nathalie; Boorgula, Meher P; Campbell, Monica; Chavan, Sameer; Cho, Michael H; David, Gloria L; Kachroo, Priyadarshini; Lasky-Su, Jessica; Li, Xingnan; McHugh, Caitlin P; Qiao, Dandi; Rafaels, Nicholas; Beck, Lisa A; Bleecker, Eugene R; Caraballo, Luis; Cupples, Adrienne L; Figueiredo, Camila A; Gallo, Richard L; Hanifin, Jon; Hansel, Nadia N; Hata, Tissa R; Hersh, Craig P; Knight-Madden, Jennifer; Leung, Donald Y M; Guttman-Yassky, Emma; Meyers, Deborah A; O'Connor, George; Ober, Carole; Ong, Peck Y; Ortega, Victor E; Paller, Amy S; Putcha, Nirupama; Reed, Robert M; Schneider, Lynda C; Silverman, Edwin K; Slifka, Mark K; Spergel, Jonathan M; Vasan, Ramachandran S; Viaud-Martinez, Karine A; Watson, Harold; Weiss, Scott T; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Ruczinski, Ingo; Beaty, Terri H; Mathias, Rasika A; Barnes, Kathleen C |
The Journal of allergy and clinical immunology |
34536413 |
2021 12 |
| Similarity and stability of face network across populations and throughout adolescence and adulthood. |
Liao, Zhijie; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Paus, Tomáš; IMAGEN consortium |
NeuroImage |
34560271 |
2021 12 01 |
| Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. |
Huang, Yufang; Liu, Yifan; Steel, Peter A D; Axsom, Kelly M; Lee, John R; Tummalapalli, Sri Lekha; Wang, Fei; Pathak, Jyotishman; Subramanian, Lakshminarayanan; Zhang, Yiye |
Journal of the American Medical Informatics Association : JAMIA |
34571540 |
2021 11 25 |
| Genetic and environmental influences of variation in diffusion MRI measures of white matter microstructure. |
Luo, Zhan; Adluru, Nagesh; Dean 3rd, Douglas C; Alexander, Andrew L; Goldsmith, H Hill |
Brain structure & function |
34585302 |
2022 Jan |
| Clinical translational neuroimaging of the antioxidant effect of N-acetylcysteine on neural microstructure. |
Yi, Sue Y; Barnett, Brian R; Poetzel, McKenzie J; Stowe, Nicholas A; Yu, John-Paul J |
Magnetic resonance in medicine |
34590731 |
2022 02 |
| Individual variation in white matter microstructure is related to better recovery from negative stimuli. |
Pedersen, Walker S; Dean, Douglas C; Adluru, Nagesh; Gresham, Lauren K; Lee, Seungbeum D; Kelly, Michael P; Mumford, Jeanette A; Davidson, Richard J; Schaefer, Stacey M |
Emotion (Washington, D.C.) |
34591511 |
2022 Mar |
| Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group. |
Harrewijn, Anita; Cardinale, Elise M; Groenewold, Nynke A; Bas-Hoogendam, Janna Marie; Aghajani, Moji; Hilbert, Kevin; Cardoner, Narcis; Porta-Casteràs, Daniel; Gosnell, Savannah; Salas, Ramiro; Jackowski, Andrea P; Pan, Pedro M; Salum, Giovanni A; Blair, Karina S; Blair, James R; Hammoud, Mira Z; Milad, Mohammed R; Burkhouse, Katie L; Phan, K Luan; Schroeder, Heidi K; Strawn, Jeffrey R; Beesdo-Baum, Katja; Jahanshad, Neda; Thomopoulos, Sophia I; Buckner, Randy; Nielsen, Jared A; Smoller, Jordan W; Soares, Jair C; Mwangi, Benson; Wu, Mon-Ju; Zunta-Soares, Giovana B; Assaf, Michal; Diefenbach, Gretchen J; Brambilla, Paolo; Maggioni, Eleonora; Hofmann, David; Straube, Thomas; Andreescu, Carmen; Berta, Rachel; Tamburo, Erica; Price, Rebecca B; Manfro, Gisele G; Agosta, Federica; Canu, Elisa; Cividini, Camilla; Filippi, Massimo; Kostić, Milutin; Munjiza Jovanovic, Ana; Alberton, Bianca A V; Benson, Brenda; Freitag, Gabrielle F; Filippi, Courtney A; Gold, Andrea L; Leibenluft, Ellen; Ringlein, Grace V; Werwath, Kathryn E; Zwiebel, Hannah; Zugman, André; Grabe, Hans J; Van der Auwera, Sandra; Wittfeld, Katharina; Völzke, Henry; Bülow, Robin; Balderston, Nicholas L; Ernst, Monique; Grillon, Christian; Mujica-Parodi, Lilianne R; van Nieuwenhuizen, Helena; Critchley, Hugo D; Makovac, Elena; Mancini, Matteo; Meeten, Frances; Ottaviani, Cristina; Ball, Tali M; Fonzo, Gregory A; Paulus, Martin P; Stein, Murray B; Gur, Raquel E; Gur, Ruben C; Kaczkurkin, Antonia N; Larsen, Bart; Satterthwaite, Theodore D; Harper, Jennifer; Myers, Michael; Perino, Michael T; Sylvester, Chad M; Yu, Qiongru; Lueken, Ulrike; Veltman, Dick J; Thompson, Paul M; Stein, Dan J; Van der Wee, Nic J A; Winkler, Anderson M; Pine, Daniel S |
Translational psychiatry |
34599145 |
2021 10 01 |
| RCytoGPS: an R package for reading and visualizing cytogenetics data. |
Abrams, Zachary B; Tally, Dwayne G; Abruzzo, Lynne V; Coombes, Kevin R |
Bioinformatics (Oxford, England) |
34601554 |
2021 Dec 07 |
| Machine Learning Prediction of Liver Allograft Utilization From Deceased Organ Donors Using the National Donor Management Goals Registry. |
Bishara, Andrew M; Lituiev, Dmytro S; Adelmann, Dieter; Kothari, Rishi P; Malinoski, Darren J; Nudel, Jacob D; Sally, Mitchell B; Hirose, Ryutaro; Hadley, Dexter D; Niemann, Claus U |
Transplantation direct |
34604507 |
2021 Oct |
| ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. |
Zhang, Harrison G; Hejblum, Boris P; Weber, Griffin M; Palmer, Nathan P; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac S; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA |
34608931 |
2021 11 25 |
| The Enhancing NeuroImaging Genetics through Meta-Analysis Consortium: 10 Years of Global Collaborations in Human Brain Mapping. |
Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne; Turner, Jessica A; Winkler, Anderson M; Thomopoulos, Sophia I; Egan, Gary F; Kochunov, Peter |
Human brain mapping |
34612558 |
2022 Jan |
| Extracting social determinants of health from electronic health records using natural language processing: a systematic review. |
Patra, Braja G; Sharma, Mohit M; Vekaria, Veer; Adekkanattu, Prakash; Patterson, Olga V; Glicksberg, Benjamin; Lepow, Lauren A; Ryu, Euijung; Biernacka, Joanna M; Furmanchuk, Al'ona; George, Thomas J; Hogan, William; Wu, Yonghui; Yang, Xi; Bian, Jiang; Weissman, Myrna; Wickramaratne, Priya; Mann, J John; Olfson, Mark; Campion, Thomas R; Weiner, Mark; Pathak, Jyotishman |
Journal of the American Medical Informatics Association : JAMIA |
34613399 |
2021 11 25 |
| IntelligentPooling: Practical Thompson Sampling for mHealth. |
Tomkins, Sabina; Liao, Peng; Klasnja, Predrag; Murphy, Susan |
Machine learning |
34621105 |
2021 Sep |
| Estimating time-varying causal excursion effect in mobile health with binary outcomes. |
Qian, Tianchen; Yoo, Hyesun; Klasnja, Predrag; Almirall, Daniel; Murphy, Susan A |
Biometrika |
34629476 |
2021 Sep |
| Meta-Analysis illustrates possible role of lipopolysaccharide (LPS)-induced tissue injury in nasopharyngeal carcinoma (NPC) pathogenesis. |
Allen, David Z; Aljabban, Jihad; Silverman, Dustin; McDermott, Sean; Wanner, Ross A; Rohr, Michael; Hadley, Dexter; Panahiazar, Maryam |
PloS one |
34648530 |
2021 |
| SmokingOpp: Detecting the Smoking 'Opportunity' Context Using Mobile Sensors. |
Chatterjee, Soujanya; Moreno, Alexander; Lizotte, Steven Lloyd; Akther, Sayma; Ertin, Emre; Fagundes, Christopher P; Lam, Cho; Rehg, James M; Wan, Neng; Wetter, David W; Kumar, Santosh |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies |
34651096 |
2020 Mar |
| Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans. |
Cahill, James A; Armstrong, Joel; Deran, Alden; Khoury, Carolyn J; Paten, Benedict; Haussler, David; Jarvis, Erich D |
Genome research |
34667117 |
2021 Nov |
| Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Paik, Young-Ki; Cristea, Ileana M; Corrales, Fernando J; Lindskog, Cecilia; Weintraub, Susan; Roehrl, Michael H A; Liu, Siqi; Bandeira, Nuno; Srivastava, Sudhir; Chen, Yu-Ju; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W |
Journal of proteome research |
34670092 |
2021 12 03 |
| Advances and Utility of the Human Plasma Proteome. |
Deutsch, Eric W; Omenn, Gilbert S; Sun, Zhi; Maes, Michal; Pernemalm, Maria; Palaniappan, Krishnan K; Letunica, Natasha; Vandenbrouck, Yves; Brun, Virginie; Tao, Sheng-Ce; Yu, Xiaobo; Geyer, Philipp E; Ignjatovic, Vera; Moritz, Robert L; Schwenk, Jochen M |
Journal of proteome research |
34672606 |
2021 12 03 |
| OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. |
Jackson, Rebecca; Matentzoglu, Nicolas; Overton, James A; Vita, Randi; Balhoff, James P; Buttigieg, Pier Luigi; Carbon, Seth; Courtot, Melanie; Diehl, Alexander D; Dooley, Damion M; Duncan, William D; Harris, Nomi L; Haendel, Melissa A; Lewis, Suzanna E; Natale, Darren A; Osumi-Sutherland, David; Ruttenberg, Alan; Schriml, Lynn M; Smith, Barry; Stoeckert Jr, Christian J; Vasilevsky, Nicole A; Walls, Ramona L; Zheng, Jie; Mungall, Christopher J; Peters, Bjoern |
Database : the journal of biological databases and curation |
34697637 |
2021 10 26 |
| Empowering study of breast cancer data with application of artificial intelligence technology: promises, challenges, and use cases. |
Panahiazar, Maryam; Chen, Nolan; Lituiev, Dmytro; Hadley, Dexter |
Clinical & experimental metastasis |
34697751 |
2022 Feb |
| Dissecting the heterogeneous subcortical brain volume of autism spectrum disorder using community detection. |
Li, Ting; Hoogman, Martine; Roth Mota, Nina; Buitelaar, Jan K; ENIGMA-ASD working group; Vasquez, Alejandro Arias; Franke, Barbara; van Rooij, Daan |
Autism research : official journal of the International Society for Autism Research |
34704385 |
2022 01 |
| Cortical and subcortical neuroanatomical signatures of schizotypy in 3004 individuals assessed in a worldwide ENIGMA study. |
Kirschner, Matthias; Hodzic-Santor, Benazir; Antoniades, Mathilde; Nenadic, Igor; Kircher, Tilo; Krug, Axel; Meller, Tina; Grotegerd, Dominik; Fornito, Alex; Arnatkeviciute, Aurina; Bellgrove, Mark A; Tiego, Jeggan; Dannlowski, Udo; Koch, Katharina; Hülsmann, Carina; Kugel, Harald; Enneking, Verena; Klug, Melissa; Leehr, Elisabeth J; Böhnlein, Joscha; Gruber, Marius; Mehler, David; DeRosse, Pamela; Moyett, Ashley; Baune, Bernhard T; Green, Melissa; Quidé, Yann; Pantelis, Christos; Chan, Raymond; Wang, Yi; Ettinger, Ulrich; Debbané, Martin; Derome, Melodie; Gaser, Christian; Besteher, Bianca; Diederen, Kelly; Spencer, Tom J; Fletcher, Paul; Rössler, Wulf; Smigielski, Lukasz; Kumari, Veena; Premkumar, Preethi; Park, Haeme R P; Wiebels, Kristina; Lemmers-Jansen, Imke; Gilleen, James; Allen, Paul; Kozhuharova, Petya; Marsman, Jan-Bernard; Lebedeva, Irina; Tomyshev, Alexander; Mukhorina, Anna; Kaiser, Stefan; Fett, Anne-Kathrin; Sommer, Iris; Schuite-Koops, Sanne; Paquola, Casey; Larivière, Sara; Bernhardt, Boris; Dagher, Alain; Grant, Phillip; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Aleman, André; Modinos, Gemma |
Molecular psychiatry |
34707236 |
2022 Feb |
| Global urbanicity is associated with brain and behaviour in young people. |
Xu, Jiayuan; Liu, Xiaoxuan; Li, Qiaojun; Goldblatt, Ran; Qin, Wen; Liu, Feng; Chu, Congying; Luo, Qiang; Ing, Alex; Guo, Lining; Liu, Nana; Liu, Huaigui; Huang, Conghong; Cheng, Jingliang; Wang, Meiyun; Geng, Zuojun; Zhu, Wenzhen; Zhang, Bing; Liao, Weihua; Qiu, Shijun; Zhang, Hui; Xu, Xiaojun; Yu, Yongqiang; Gao, Bo; Han, Tong; Cui, Guangbin; Chen, Feng; Xian, Junfang; Li, Jiance; Zhang, Jing; Zuo, Xi-Nian; Wang, Dawei; Shen, Wen; Miao, Yanwei; Yuan, Fei; Lui, Su; Zhang, Xiaochu; Xu, Kai; Zhang, Longjiang; Ye, Zhaoxiang; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Robinson, Lauren; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Winterer, Jeanne; Patrick, Kevin; Calhoun, Vince; Li, Mulin Jun; Liang, Meng; Gong, Peng; Barker, Edward D; Clinton, Nicholas; Marquand, Andre; Yu, Le; Yu, Chunshui; Schumann, Gunter; CHIMGEN; IMAGEN Consortia |
Nature human behaviour |
34711977 |
2022 02 |
| Knowledge-based approaches to drug discovery for rare diseases. |
Alves, Vinicius M; Korn, Daniel; Pervitsky, Vera; Thieme, Andrew; Capuzzi, Stephen J; Baker, Nancy; Chirkova, Rada; Ekins, Sean; Muratov, Eugene N; Hickey, Anthony; Tropsha, Alexander |
Drug discovery today |
34718207 |
2022 02 |
| The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. |
Perez-Riverol, Yasset; Bai, Jingwen; Bandla, Chakradhar; García-Seisdedos, David; Hewapathirana, Suresh; Kamatchinathan, Selvakumar; Kundu, Deepti J; Prakash, Ananth; Frericks-Zipper, Anika; Eisenacher, Martin; Walzer, Mathias; Wang, Shengbo; Brazma, Alvis; Vizcaíno, Juan Antonio |
Nucleic acids research |
34723319 |
2022 Jan 07 |
| Ibrutinib Blocks YAP1 Activation and Reverses BRAF Inhibitor Resistance in Melanoma Cells. |
Misek, Sean A; Newbury, Patrick A; Chekalin, Evgenii; Paithankar, Shreya; Doseff, Andrea I; Chen, Bin; Gallo, Kathleen A; Neubig, Richard R |
Molecular pharmacology |
34732527 |
2022 01 |
| Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. |
Gao, Si; Donohue, Brian; Hatch, Kathryn S; Chen, Shuo; Ma, Tianzhou; Ma, Yizhou; Kvarta, Mark D; Bruce, Heather; Adhikari, Bhim M; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Hong, L Elliot; Medland, Sarah E; Ganjgahi, Habib; Nichols, Thomas E; Kochunov, Peter |
NeuroImage |
34740793 |
2021 Dec 15 |
| Nyströmformer: A Nystöm-based Algorithm for Approximating Self-Attention. |
Xiong, Yunyang; Zeng, Zhanpeng; Chakraborty, Rudrasis; Tan, Mingxing; Fung, Glenn; Li, Yin; Singh, Vikas |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence |
34745767 |
2021 |
| Associations of alcohol use, HIV infection, and age with brain white matter microstructure. |
Monnig, Mollie A; Gullett, Joseph M; Porges, Eric C; Woods, Adam J; Monti, Peter M; Tashima, Karen; Jahanshad, Neda; Thompson, Paul; Nir, Talia; Cohen, Ronald A |
Journal of neurovirology |
34750783 |
2021 Dec |
| Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures. |
Ding, Hongxu; Anastopoulos, Ioannis; Bailey 4th, Andrew D; Stuart, Joshua; Paten, Benedict |
Nature communications |
34764310 |
2021 11 11 |
| The reactome pathway knowledgebase 2022. |
Gillespie, Marc; Jassal, Bijay; Stephan, Ralf; Milacic, Marija; Rothfels, Karen; Senff-Ribeiro, Andrea; Griss, Johannes; Sevilla, Cristoffer; Matthews, Lisa; Gong, Chuqiao; Deng, Chuan; Varusai, Thawfeek; Ragueneau, Eliot; Haider, Yusra; May, Bruce; Shamovsky, Veronica; Weiser, Joel; Brunson, Timothy; Sanati, Nasim; Beckman, Liam; Shao, Xiang; Fabregat, Antonio; Sidiropoulos, Konstantinos; Murillo, Julieth; Viteri, Guilherme; Cook, Justin; Shorser, Solomon; Bader, Gary; Demir, Emek; Sander, Chris; Haw, Robin; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter |
Nucleic acids research |
34788843 |
2022 01 07 |
| Dynamic models of stress-smoking responses based on high-frequency sensor data. |
|
NPJ digital medicine |
34815538 |
2021 Nov 23 |
| Opal: an implementation science tool for machine learning clinical decision support in anesthesia. |
Bishara, Andrew; Wong, Andrew; Wang, Linshanshan; Chopra, Manu; Fan, Wudi; Lin, Alan; Fong, Nicholas; Palacharla, Aditya; Spinner, Jon; Armstrong, Rachelle; Pletcher, Mark J; Lituiev, Dmytro; Hadley, Dexter; Butte, Atul |
Journal of clinical monitoring and computing |
34837585 |
2022 Oct |
| Variant interpretation using population databases: Lessons from gnomAD. |
Gudmundsson, Sanna; Singer-Berk, Moriel; Watts, Nicholas A; Phu, William; Goodrich, Julia K; Solomonson, Matthew; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; O'Donnell-Luria, Anne |
Human mutation |
34859531 |
2021 Dec 02 |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. |
Petras, Daniel; Phelan, Vanessa V; Acharya, Deepa; Allen, Andrew E; Aron, Allegra T; Bandeira, Nuno; Bowen, Benjamin P; Belle-Oudry, Deirdre; Boecker, Simon; Cummings Jr, Dale A; Deutsch, Jessica M; Fahy, Eoin; Garg, Neha; Gregor, Rachel; Handelsman, Jo; Navarro-Hoyos, Mirtha; Jarmusch, Alan K; Jarmusch, Scott A; Louie, Katherine; Maloney, Katherine N; Marty, Michael T; Meijler, Michael M; Mizrahi, Itzhak; Neve, Rachel L; Northen, Trent R; Molina-Santiago, Carlos; Panitchpakdi, Morgan; Pullman, Benjamin; Puri, Aaron W; Schmid, Robin; Subramaniam, Shankar; Thukral, Monica; Vasquez-Castro, Felipe; Dorrestein, Pieter C; Wang, Mingxun |
Nature methods |
34862502 |
2022 02 |
| In situ functional cell phenotyping reveals microdomain networks in colorectal cancer recurrence. |
Furman, Samantha A; Stern, Andrew M; Uttam, Shikhar; Taylor, D Lansing; Pullara, Filippo; Chennubhotla, S Chakra |
Cell reports methods |
34888541 |
2021 Sep 27 |
| Predicting brain age based on sleep EEG and DenseNet. |
Yook, Soonhyun; Miao, Yizhan; Park, Claire; Park, Hea Ree; Kim, Jinyoung; Lim, Diane C; Yeon Joo, Eun; Kim, Hosung |
Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference |
34891282 |
2021 11 |
| Diagnosis of bipolar disorders and body mass index predict clustering based on similarities in cortical thickness-ENIGMA study in 2436 individuals. |
McWhinney, Sean R; Abé, Christoph; Alda, Martin; Benedetti, Francesco; Bøen, Erlend; Del Mar Bonnin, Caterina; Borgers, Tiana; Brosch, Katharina; Canales-Rodríguez, Erick J; Cannon, Dara M; Dannlowski, Udo; Diaz-Zuluaga, Ana M; Dietze, Lorielle; Elvsåshagen, Torbjørn; Eyler, Lisa T; Fullerton, Janice M; Goikolea, Jose M; Goltermann, Janik; Grotegerd, Dominik; Haarman, Bartholomeus C M; Hahn, Tim; Howells, Fleur M; Ingvar, Martin; Kircher, Tilo T J; Krug, Axel; Kuplicki, Rayus T; Landén, Mikael; Lemke, Hannah; Liberg, Benny; Lopez-Jaramillo, Carlos; Malt, Ulrik F; Martyn, Fiona M; Mazza, Elena; McDonald, Colm; McPhilemy, Genevieve; Meier, Sandra; Meinert, Susanne; Meller, Tina; Melloni, Elisa M T; Mitchell, Philip B; Nabulsi, Leila; Nenadic, Igor; Opel, Nils; Ophoff, Roel A; Overs, Bronwyn J; Pfarr, Julia-Katharina; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Raduà, Joaquim; Repple, Jonathan; Richter, Maike; Ringwald, Kai G; Roberts, Gloria; Ross, Alex; Salvador, Raymond; Savitz, Jonathan; Schmitt, Simon; Schofield, Peter R; Sim, Kang; Stein, Dan J; Stein, Frederike; Temmingh, Henk S; Thiel, Katharina; Thomopoulos, Sophia I; van Haren, Neeltje E M; Van Gestel, Holly; Vargas, Cristian; Vieta, Eduard; Vreeker, Annabel; Waltemate, Lena; Yatham, Lakshmi N; Ching, Christopher R K; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group |
Bipolar disorders |
34894200 |
2021 Dec 11 |
| Characterizing reward system neural trajectories from adolescence to young adulthood. |
Cao, Zhipeng; Ottino-Gonzalez, Jonatan; Cupertino, Renata B; Juliano, Anthony; Chaarani, Bader; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Schumann, Gunter; Whelan, Robert; Mackey, Scott; Garavan, Hugh; IMAGEN consortiu |
Developmental cognitive neuroscience |
34894615 |
2021 Dec |
| Assessment of brain age in posttraumatic stress disorder: Findings from the ENIGMA PTSD and brain age working groups. |
Clausen, Ashley N; Fercho, Kelene A; Monsour, Molly; Disner, Seth; Salminen, Lauren; Haswell, Courtney C; Rubright, Emily Clarke; Watts, Amanda A; Buckley, M Nicole; Maron-Katz, Adi; Sierk, Anika; Manthey, Antje; Suarez-Jimenez, Benjamin; Olatunji, Bunmi O; Averill, Christopher L; Hofmann, David; Veltman, Dick J; Olson, Elizabeth A; Li, Gen; Forster, Gina L; Walter, Henrik; Fitzgerald, Jacklynn; Théberge, Jean; Simons, Jeffrey S; Bomyea, Jessica A; Frijling, Jessie L; Krystal, John H; Baker, Justin T; Phan, K Luan; Ressler, Kerry; Han, Laura K M; Nawijn, Laura; Lebois, Lauren A M; Schmaal, Lianne; Densmore, Maria; Shenton, Martha E; van Zuiden, Mirjam; Stein, Murray; Fani, Negar; Simons, Raluca M; Neufeld, Richard W J; Lanius, Ruth; van Rooij, Sanne; Koch, Saskia B J; Bonomo, Serena; Jovanovic, Tanja; deRoon-Cassini, Terri; Ely, Timothy D; Magnotta, Vincent A; He, Xiaofu; Abdallah, Chadi G; Etkin, Amit; Schmahl, Christian; Larson, Christine; Rosso, Isabelle M; Blackford, Jennifer Urbano; Stevens, Jennifer S; Daniels, Judith K; Herzog, Julia; Kaufman, Milissa L; Olff, Miranda; Davidson, Richard J; Sponheim, Scott R; Mueller, Sven C; Straube, Thomas; Zhu, Xi; Neria, Yuval; Baugh, Lee A; Cole, James H; Thompson, Paul M; Morey, Rajendra A |
Brain and behavior |
34907666 |
2022 Jan |
| Multipollutant, longitudinal analysis of the association between urinary tungsten and incident diabetes in a rural population. |
Riseberg, Emily; James, Katherine A; Woodin, Mark; Melamed, Rachel; Alderete, Tanya; Corlin, Laura |
Environmental epidemiology (Philadelphia, Pa.) |
34909553 |
2021 Dec |
| Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. |
Sirén, Jouni; Monlong, Jean; Chang, Xian; Novak, Adam M; Eizenga, Jordan M; Markello, Charles; Sibbesen, Jonas A; Hickey, Glenn; Chang, Pi-Chuan; Carroll, Andrew; Gupta, Namrata; Gabriel, Stacey; Blackwell, Thomas W; Ratan, Aakrosh; Taylor, Kent D; Rich, Stephen S; Rotter, Jerome I; Haussler, David; Garrison, Erik; Paten, Benedict |
Science (New York, N.Y.) |
34914532 |
2021 12 17 |
| Trauma and posttraumatic stress disorder modulate polygenic predictors of hippocampal and amygdala volume. |
Zheng, Yuanchao; Garrett, Melanie E; Sun, Delin; Clarke-Rubright, Emily K; Haswell, Courtney C; Maihofer, Adam X; Elman, Jeremy A; Franz, Carol E; Lyons, Michael J; Kremen, William S; Peverill, Matthew; Sambrook, Kelly; McLaughlin, Katie A; Davenport, Nicholas D; Disner, Seth; Sponheim, Scott R; Andrew, Elpiniki; Korgaonkar, Mayuresh; Bryant, Richard; Varkevisser, Tim; Geuze, Elbert; Coleman, Jonathan; Beckham, Jean C; Kimbrel, Nathan A; Sullivan, Danielle; Miller, Mark; Hayes, Jasmeet; Verfaellie, Mieke; Wolf, Erika; Salat, David; Spielberg, Jeffrey M; Milberg, William; McGlinchey, Regina; Dennis, Emily L; Thompson, Paul M; Medland, Sarah; Jahanshad, Neda; Nievergelt, Caroline M; Ashley-Koch, Allison E; Logue, Mark W; Morey, Rajendra A |
Translational psychiatry |
34916497 |
2021 Dec 16 |
| Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders. |
Papale, Ligia A; Madrid, Andy; Zhang, Qi; Chen, Kailei; Sak, Lara; Keleş, Sündüz; Alisch, Reid S |
Genome research |
34949667 |
2022 Feb |
| Brain Signatures During Reward Anticipation Predict Persistent Attention-Deficit/Hyperactivity Disorder Symptoms. |
Chen, Di; Jia, Tianye; Cheng, Wei; Cao, Miao; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Robbins, T W; Sahakian, Barbara J; Schumann, Gunter; Feng, Jianfeng; IMAGEN Consortium |
Journal of the American Academy of Child and Adolescent Psychiatry |
34954028 |
2022 08 |
| Memory-Aware Active Learning in Mobile Sensing Systems. |
Ashari, Zhila Esna; Chaytor, Naomi S; Cook, Diane J; Ghasemzadeh, Hassan |
IEEE transactions on mobile computing |
34970086 |
2022 Jan 01 |
| Coupled exoskeleton assistance simplifies control and maintains metabolic benefits: A simulation study. |
Bianco, Nicholas A; Franks, Patrick W; Hicks, Jennifer L; Delp, Scott L |
PloS one |
34986191 |
2022 |
| Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. |
Jiang, Ziyuan; Li, Jiajin; Kong, Nahyun; Kim, Jeong-Hyun; Kim, Bong-Soo; Lee, Min-Jung; Park, Yoon Mee; Lee, So-Yeon; Hong, Soo-Jong; Sul, Jae Hoon |
Scientific reports |
34997172 |
2022 Jan 07 |
| The microrandomized trial for developing digital interventions: Experimental design and data analysis considerations. |
Qian, Tianchen; Walton, Ashley E; Collins, Linda M; Klasnja, Predrag; Lanza, Stephanie T; Nahum-Shani, Inbal; Rabbi, Mashfiqui; Russell, Michael A; Walton, Maureen A; Yoo, Hyesun; Murphy, Susan A |
Psychological methods |
35025583 |
2022 Jan 13 |
| Mapping Complex Brain Torque Components and Their Genetic Architecture and Phenomic Associations in 24,112 Individuals. |
Zhao, Lu; Matloff, William; Shi, Yonggang; Cabeen, Ryan P; Toga, Arthur W |
Biological psychiatry |
35027165 |
2022 Apr 15 |
| Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. |
Gupta, Parul; Naithani, Sushma; Preece, Justin; Kim, Sunghwan; Cheng, Tiejun; D'Eustachio, Peter; Elser, Justin; Bolton, Evan E; Jaiswal, Pankaj |
Methods in molecular biology (Clifton, N.J.) |
35037224 |
2022 |
| Minimal Information about MHC Multimers (MIAMM). |
Vita, Randi; Mody, Apurva; Overton, James A; Buus, Soren; Haley, Stephen T; Sette, Alessandro; Mallajosyula, Vamsee; Davis, Mark M; Long, Dale L; Willis, Richard A; Peters, Bjoern; Altman, John D |
Journal of immunology (Baltimore, Md. : 1950) |
35042788 |
2022 02 01 |
| Large-scale diet tracking data reveal disparate associations between food environment and diet. |
Althoff, Tim; Nilforoshan, Hamed; Hua, Jenna; Leskovec, Jure |
Nature communications |
35042849 |
2022 01 18 |
| STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING. |
Wang, Shulei; Fan, Jianqing; Pocock, Ginger; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming |
Statistica Sinica |
35046630 |
2021 Jan |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare. |
Rehm, Heidi L; Page, Angela J H; Smith, Lindsay; Adams, Jeremy B; Alterovitz, Gil; Babb, Lawrence J; Barkley, Maxmillian P; Baudis, Michael; Beauvais, Michael J S; Beck, Tim; Beckmann, Jacques S; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K; Boughtwood, Tiffany F; Bourque, Guillaume; Bowers, Sarion R; Brookes, Anthony J; Brudno, Michael; Brush, Matthew H; Bujold, David; Burdett, Tony; Buske, Orion J; Cabili, Moran N; Cameron, Daniel L; Carroll, Robert J; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P; Chen, Shu Hui; Cherry, J Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L; Cook-Deegan, Robert M; Courtot, Mélanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M; Denisko, Danielle; Doerr, Megan J; Dolman, Lena I; Dove, Edward S; Dursi, L Jonathan; Dyke, Stephanie O M; Eddy, James A; Eilbeck, Karen; Ellrott, Kyle P; Fairley, Susan; Fakhro, Khalid A; Firth, Helen V; Fitzsimons, Michael S; Fiume, Marc; Flicek, Paul; Fore, Ian M; Freeberg, Mallory A; Freimuth, Robert R; Fromont, Lauren A; Fuerth, Jonathan; Gaff, Clara L; Gan, Weiniu; Ghanaim, Elena M; Glazer, David; Green, Robert C; Griffith, Malachi; Griffith, Obi L; Grossman, Robert L; Groza, Tudor; Auvil, Jaime M Guidry; Guigó, Roderic; Gupta, Dipayan; Haendel, Melissa A; Hamosh, Ada; Hansen, David P; Hart, Reece K; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M; Ho, Calvin W L; Hobb, Ashley E; Hoffman, Michael M; Hofmann, Oliver M; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E; Husami, Ammar; Jacobsen, Julius O; Jamuar, Saumya S; Janes, Elizabeth L; Jeanson, Francis; Jené, Aina; Johns, Amber L; Joly, Yann; Jones, Steven J M; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M; Konopko, Melissa A; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F; Linden, Mikael; Liu, Xianglin; Udara Liyanage, Isuru; Lopez, Javier; Lucassen, Anneke M; Lukowski, Michael; Mann, Alice L; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J; Molnár-Gábor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyrönen, Tommi H; O'Connor, Brian D; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A D; Palumbo, Emilio; Parkinson, Helen E; Philippakis, Anthony A; Pizarro, Angel D; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A; Robinson, Peter N; Rodarmer, Kurt W; Rodriguez, Laura Lyman; Rubin, Alan F; Rueda, Manuel; Rushton, Gregory A; Ryan, Rosalyn S; Saunders, Gary I; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C; Skantharajah, Neerjah; Smith, Albert V; Sofia, Heidi J; Spalding, Dylan; Spurdle, Amanda B; Stark, Zornitza; Stein, Lincoln D; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A; Thomson, Alastair A; Thorogood, Adrian; Tickle, Timothy L; Tokunaga, Katsushi; Törnroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F; Viner, Coby; Voisin, Craig; Wagner, Alex H; Wallace, Susan E; Walsh, Brian P; Williams, Marc S; Winkler, Eva C; Wold, Barbara J; Wood, Grant M; Woolley, J Patrick; Yamasaki, Chisato; Yates, Andrew D; Yung, Christina K; Zass, Lyndon J; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan |
Cell genomics |
35072136 |
2021 Nov 10 |
| Mitochondrial DNA variation across 56,434 individuals in gnomAD. |
Laricchia, Kristen M; Lake, Nicole J; Watts, Nicholas A; Shand, Megan; Haessly, Andrea; Gauthier, Laura; Benjamin, David; Banks, Eric; Soto, Jose; Garimella, Kiran; Emery, James; Genome Aggregation Database Consortium; Rehm, Heidi L; MacArthur, Daniel G; Tiao, Grace; Lek, Monkol; Mootha, Vamsi K; Calvo, Sarah E |
Genome research |
35074858 |
2022 03 |
| Contraception information on the websites of student health centers in the United States. |
Kakar, Venoo; Kulkarni, Anagha; Holschuh, Carrie; Smirnova, Anastasia; Modrek, Sepideh |
Contraception |
35085543 |
2022 08 |
| The additive impact of cardio-metabolic disorders and psychiatric illnesses on accelerated brain aging. |
Ryan, Meghann C; Hong, L Elliot; Hatch, Kathryn S; Gao, Si; Chen, Shuo; Haerian, Krystl; Wang, Jingtao; Goldwaser, Eric L; Du, Xiaoming; Adhikari, Bhim M; Bruce, Heather; Hare, Stephanie; Kvarta, Mark D; Jahanshad, Neda; Nichols, Thomas E; Thompson, Paul M; Kochunov, Peter |
Human brain mapping |
35112422 |
2022 Apr 15 |
| Cross disorder comparisons of brain structure in schizophrenia, bipolar disorder, major depressive disorder, and 22q11.2 deletion syndrome: A review of ENIGMA findings. |
Cheon, Eun-Jin; Bearden, Carrie E; Sun, Daqiang; Ching, Christopher R K; Andreassen, Ole A; Schmaal, Lianne; Veltman, Dick J; Thomopoulos, Sophia I; Kochunov, Peter; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A; van Erp, Theo G M |
Psychiatry and clinical neurosciences |
35119167 |
2022 Feb 04 |
| LOCALIZING DIFFERENTIALLY EVOLVING COVARIANCE STRUCTURES VIA SCAN STATISTICS. |
Mehta, Ronak; Kim, Hyunwoo J; Wang, Shulei; Johnson, Sterling C; Yuan, Ming; Singh, Vikas |
Quarterly of applied mathematics |
35125524 |
2019 |
| On Training Deep 3D CNN Models with Dependent Samples in Neuroimaging. |
Xiong, Yunyang; Kim, Hyunwoo J; Tangirala, Bhargav; Mehta, Ronak; Johnson, Sterling C; Singh, Vikas |
Information processing in medical imaging : proceedings of the ... conference |
35125834 |
2019 May |
| DUAL-GLOW: Conditional Flow-Based Generative Model for Modality Transfer. |
Sun, Haoliang; Mehta, Ronak; Zhou, Hao H; Huang, Zhichun; Johnson, Sterling C; Prabhakaran, Vivek; Singh, Vikas |
Proceedings. IEEE International Conference on Computer Vision |
35125977 |
2019 Oct-Nov |
| International federation of genomic medicine databases using GA4GH standards. |
Thorogood, Adrian; Rehm, Heidi L; Goodhand, Peter; Page, Angela J H; Joly, Yann; Baudis, Michael; Rambla, Jordi; Navarro, Arcadi; Nyronen, Tommi H; Linden, Mikael; Dove, Edward S; Fiume, Marc; Brudno, Michael; Cline, Melissa S; Bimey, Ewan |
Cell genomics |
35128509 |
2021 Nov 10 |
| Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. |
Sha, Zhiqiang; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Bernhardt, Boris; Bolte, Sven; Busatto, Geraldo F; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Duan, Meiyu; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jacqueline; Floris, Dorothea L; Franke, Barbara; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Lazaro, Luisa; Luna, Beatriz; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Declan G M; Neufeld, Janina; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Pariente, Jose C; Postema, Merel C; Remnelius, Karl Lundin; Retico, Alessandra; Rosa, Pedro Gomes Penteado; Rubia, Katya; Shook, Devon; Tammimies, Kristiina; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde |
Molecular psychiatry |
35136228 |
2022 04 |
| Standardized Integration of Person-Generated Data Into Routine Clinical Care. |
Zeng, Billy; Bove, Riley; Carini, Simona; Lee, Jonathan Shing-Jih; Pollak, J P; Schleimer, Erica; Sim, Ida |
JMIR mHealth and uHealth |
35142627 |
2022 02 10 |
| SLC13A5/sodium-citrate co-transporter overexpression causes disrupted white matter integrity and an autistic-like phenotype. |
Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi |
Brain communications |
35146426 |
2022 Feb |
| A Developmental Perspective on Facets of Impulsivity and Brain Activity Correlates From Adolescence to Adulthood. |
Kaiser, Anna; Holz, Nathalie E; Banaschewski, Tobias; Baumeister, Sarah; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Millenet, Sabina; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Schwarz, Emanuel; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Brandeis, Daniel; Nees, Frauke; IMAGEN Consortium |
Biological psychiatry. Cognitive neuroscience and neuroimaging |
35182817 |
2022 Nov |
| The thalamus and its subnuclei-a gateway to obsessive-compulsive disorder. |
Weeland, Cees J; Kasprzak, Selina; de Joode, Niels T; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Balachander, Srinivas; Banaj, Nerisa; Bargallo, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brecke, Vilde; Brem, Silvia; Cappi, Carolina; Cheng, Yuqi; Cho, Kang Ik K; Costa, Daniel L C; Dallaspezia, Sara; Denys, Damiaan; Eng, Goi Khia; Ferreira, Sónia; Feusner, Jamie D; Fontaine, Martine; Fouche, Jean-Paul; Grazioplene, Rachael G; Gruner, Patricia; He, Mengxin; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Hu, Hao; Jaspers-Fayer, Fern; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Bin Kwak, Yoo; Kwon, Jun Soo; Lazaro, Luisa; Li, Chiang-Shan R; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, Jose M; Minnuzi, Luciano; Moreira, Pedro Silva; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Ortiz, Ana E; Pariente, Jose C; Piacentini, John; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Rodriguez-Manrique, Daniela; Sakai, Yuki; Shimizu, Eiji; Shivakumar, Venkataram; Simpson, Helen Blair; Soreni, Noam; Soriano-Mas, Carles; Sousa, Nuno; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Takahashi, Jumpei; Tanamatis, Tais; Tang, Jinsong; Thorsen, Anders Lillevik; Tolin, David; van der Werf, Ysbrand D; van Marle, Hein; van Wingen, Guido A; Vecchio, Daniela; Venkatasubramanian, G; Walitza, Susanne; Wang, Jicai; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; White, Tonya; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; Vriend, Chris |
Translational psychiatry |
35190533 |
2022 Feb 21 |
| STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity. |
Borba, Joyce V B; Alves, Vinicius M; Braga, Rodolpho C; Korn, Daniel R; Overdahl, Kirsten; Silva, Arthur C; Hall, Steven U S; Overdahl, Erik; Kleinstreuer, Nicole; Strickland, Judy; Allen, David; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander |
Environmental health perspectives |
35192406 |
2022 02 |
| Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphology. |
Rigby, Michael J; Orefice, Nicola Salvatore; Lawton, Alexis J; Ma, Min; Shapiro, Samantha L; Yi, Sue Y; Dieterich, Inca A; Frelka, Alyssa; Miles, Hannah N; Pearce, Robert A; Yu, John Paul J; Li, Lingjun; Denu, John M; Puglielli, Luigi |
Brain : a journal of neurology |
35203088 |
2022 Apr 18 |
| Survival of Hydroxyapatite-Coated Versus Non-hydroxyapatite-Coated Total Hip Arthroplasty Implants in a Veteran Population. |
Tyagi, Vineet; Harris, Alex H S; Giori, Nicholas J |
The Journal of arthroplasty |
35219818 |
2022 06 |
| Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014. |
Chilam, Jeremiah; Argimón, Silvia; Limas, Marilyn T; Masim, Melissa L; Gayeta, June M; Lagrada, Marietta L; Olorosa, Agnettah M; Cohen, Victoria; Hernandez, Lara T; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M; Sia, Sonia B; Holden, Matthew T G; Stelling, John; Aanensen, David M; Carlos, Celia C; Philippines Antimicrobial Resistance Surveillance Program |
Western Pacific surveillance and response journal : WPSAR |
35251744 |
2021 |
| Associations of delay discounting and drinking trajectories from ages 14 to 22. |
Fröhner, Juliane H; Ripke, Stephan; Jurk, Sarah; Li, Shu-Chen; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Smolka, Michael N; IMAGEN Consortium |
Alcoholism, clinical and experimental research |
35257381 |
2022 Apr |
| Automatic wound detection and size estimation using deep learning algorithms. |
Carrión, Héctor; Jafari, Mohammad; Bagood, Michelle Dawn; Yang, Hsin-Ya; Isseroff, Roslyn Rivkah; Gomez, Marcella |
PLoS computational biology |
35275923 |
2022 Mar |
| Age-dependent white matter disruptions after military traumatic brain injury: Multivariate analysis results from ENIGMA brain injury. |
Bouchard, Heather C; Sun, Delin; Dennis, Emily L; Newsome, Mary R; Disner, Seth G; Elman, Jeremy; Silva, Annelise; Velez, Carmen; Irimia, Andrei; Davenport, Nicholas D; Sponheim, Scott R; Franz, Carol E; Kremen, William S; Coleman, Michael J; Williams, M Wright; Geuze, Elbert; Koerte, Inga K; Shenton, Martha E; Adamson, Maheen M; Coimbra, Raul; Grant, Gerald; Shutter, Lori; George, Mark S; Zafonte, Ross D; McAllister, Thomas W; Stein, Murray B; Thompson, Paul M; Wilde, Elisabeth A; Tate, David F; Sotiras, Aristeidis; Morey, Rajendra A |
Human brain mapping |
35289463 |
2022 Jun 01 |
| Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. |
LeDuc, Richard D; Deutsch, Eric W; Binz, Pierre-Alain; Fellers, Ryan T; Cesnik, Anthony J; Klein, Joshua A; Van Den Bossche, Tim; Gabriels, Ralf; Yalavarthi, Arshika; Perez-Riverol, Yasset; Carver, Jeremy; Bittremieux, Wout; Kawano, Shin; Pullman, Benjamin; Bandeira, Nuno; Kelleher, Neil L; Thomas, Paul M; Vizcaíno, Juan Antonio |
Journal of proteome research |
35290070 |
2022 Apr 01 |
| Scaling Recurrent Models via Orthogonal Approximations in Tensor Trains. |
Mehta, Ronak; Chakraborty, Rudrasis; Xiong, Yunyang; Singh, Vikas |
Proceedings. IEEE International Conference on Computer Vision |
35291675 |
2019 Oct-Nov |
| Long-term Survival after Hematopoietic Cell Transplant for Sickle Cell Disease Compared to the United States Population. |
St Martin, Andrew; Hebert, Kyle M; Serret-Larmande, Arnaud; Jouhet, Vianney; Hughes, Emily; Stedman, Jason; DeSain, Thomas; Pillion, Danielle; Lyons, Jessica C; Steinert, Patricia; Avillach, Paul; Eapen, Mary |
Transplantation and cellular therapy |
35302009 |
2022 Mar 15 |
| Remodeling of the Cortical Structural Connectome in Posttraumatic Stress Disorder: Results From the ENIGMA-PGC Posttraumatic Stress Disorder Consortium. |
Sun, Delin; Rakesh, Gopalkumar; Clarke-Rubright, Emily K; Haswell, Courtney C; Logue, Mark W; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal M; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray B; Bomyea, Jessica; Koerte, Inga; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia I; Lebois, Lauren A M; Baker, Justin T; Ressler, Kerry J; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee A; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas D; Grupe, Dan; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha E; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; Wang, Xin; Thompson, Paul M; Morey, Rajendra A |
Biological psychiatry. Cognitive neuroscience and neuroimaging |
35307575 |
2022 09 |
| mTeeth: Identifying Brushing Teeth Surfaces Using Wrist-Worn Inertial Sensors. |
Akther, Sayma; Saleheen, Nazir; Saha, Mithun; Shetty, Vivek; Kumar, Santosh |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies |
35309968 |
2021 Jun |
| The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification. |
Wagner, Alex H; Babb, Lawrence; Alterovitz, Gil; Baudis, Michael; Brush, Matthew; Cameron, Daniel L; Cline, Melissa; Griffith, Malachi; Griffith, Obi L; Hunt, Sarah E; Kreda, David; Lee, Jennifer M; Li, Stephanie; Lopez, Javier; Moyer, Eric; Nelson, Tristan; Patel, Ronak Y; Riehle, Kevin; Robinson, Peter N; Rynearson, Shawn; Schuilenburg, Helen; Tsukanov, Kirill; Walsh, Brian; Konopko, Melissa; Rehm, Heidi L; Yates, Andrew D; Freimuth, Robert R; Hart, Reece K |
Cell genomics |
35311178 |
2021 Nov 10 |
| LEARNING TO SYNTHESIZE CORTICAL MORPHOLOGICAL CHANGES USING GRAPH CONDITIONAL VARIATIONAL AUTOENCODER. |
Chai, Yaqiong; Liu, Mengting; Duffy, Ben A; Kim, Hosung |
Proceedings. IEEE International Symposium on Biomedical Imaging |
35330877 |
2021 Apr |
| Linking complex disease and exposure data-insights from an environmental and occupational health study. |
Ives, Cataia; Pan, Huaqin; Edwards, Stephen W; Nelms, Mark; Covert, Hannah; Lichtveld, Maureen Y; Harville, Emily W; Wickliffe, Jeffrey K; Zijlmans, Wilco; Hamilton, Carol M |
Journal of exposure science & environmental epidemiology |
35347232 |
2022 Mar 28 |
| Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing. |
Goenka, Sneha D; Gorzynski, John E; Shafin, Kishwar; Fisk, Dianna G; Pesout, Trevor; Jensen, Tanner D; Monlong, Jean; Chang, Pi-Chuan; Baid, Gunjan; Bernstein, Jonathan A; Christle, Jeffrey W; Dalton, Karen P; Garalde, Daniel R; Grove, Megan E; Guillory, Joseph; Kolesnikov, Alexey; Nattestad, Maria; Ruzhnikov, Maura R Z; Samadi, Mehrzad; Sethia, Ankit; Spiteri, Elizabeth; Wright, Christopher J; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J; Carroll, Andrew; Paten, Benedict; Ashley, Euan A |
Nature biotechnology |
35347328 |
2022 Jul |
| Federated analysis of BRCA1 and BRCA2 variation in a Japanese cohort. |
Casaletto, James; Parsons, Michael; Markello, Charles; Iwasaki, Yusuke; Momozawa, Yukihide; Spurdle, Amanda B; Cline, Melissa |
Cell genomics |
35373174 |
2022 Mar 09 |
| Genetic variants associated with longitudinal changes in brain structure across the lifespan. |
Brouwer, Rachel M; Klein, Marieke; Grasby, Katrina L; Schnack, Hugo G; Jahanshad, Neda; Teeuw, Jalmar; Thomopoulos, Sophia I; Sprooten, Emma; Franz, Carol E; Gogtay, Nitin; Kremen, William S; Panizzon, Matthew S; Olde Loohuis, Loes M; Whelan, Christopher D; Aghajani, Moji; Alloza, Clara; Alnæs, Dag; Artiges, Eric; Ayesa-Arriola, Rosa; Barker, Gareth J; Bastin, Mark E; Blok, Elisabet; Bøen, Erlend; Breukelaar, Isabella A; Bright, Joanna K; Buimer, Elizabeth E L; Bülow, Robin; Cannon, Dara M; Ciufolini, Simone; Crossley, Nicolas A; Damatac, Christienne G; Dazzan, Paola; de Mol, Casper L; de Zwarte, Sonja M C; Desrivières, Sylvane; Díaz-Caneja, Covadonga M; Doan, Nhat Trung; Dohm, Katharina; Fröhner, Juliane H; Goltermann, Janik; Grigis, Antoine; Grotegerd, Dominik; Han, Laura K M; Harris, Mathew A; Hartman, Catharina A; Heany, Sarah J; Heindel, Walter; Heslenfeld, Dirk J; Hohmann, Sarah; Ittermann, Bernd; Jansen, Philip R; Janssen, Joost; Jia, Tianye; Jiang, Jiyang; Jockwitz, Christiane; Karali, Temmuz; Keeser, Daniel; Koevoets, Martijn G J C; Lenroot, Rhoshel K; Malchow, Berend; Mandl, René C W; Medel, Vicente; Meinert, Susanne; Morgan, Catherine A; Mühleisen, Thomas W; Nabulsi, Leila; Opel, Nils; de la Foz, Víctor Ortiz-García; Overs, Bronwyn J; Paillère Martinot, Marie-Laure; Redlich, Ronny; Marques, Tiago Reis; Repple, Jonathan; Roberts, Gloria; Roshchupkin, Gennady V; Setiaman, Nikita; Shumskaya, Elena; Stein, Frederike; Sudre, Gustavo; Takahashi, Shun; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; van der Lugt, Aad; van Haren, Neeltje E M; Wardlaw, Joanna M; Wen, Wei; Westeneng, Henk-Jan; Wittfeld, Katharina; Zhu, Alyssa H; Zugman, Andre; Armstrong, Nicola J; Bonfiglio, Gaia; Bralten, Janita; Dalvie, Shareefa; Davies, Gail; Di Forti, Marta; Ding, Linda; Donohoe, Gary; Forstner, Andreas J; Gonzalez-Peñas, Javier; Guimaraes, Joao P O F T; Homuth, Georg; Hottenga, Jouke-Jan; Knol, Maria J; Kwok, John B J; Le Hellard, Stephanie; Mather, Karen A; Milaneschi, Yuri; Morris, Derek W; Nöthen, Markus M; Papiol, Sergi; Rietschel, Marcella; Santoro, Marcos L; Steen, Vidar M; Stein, Jason L; Streit, Fabian; Tankard, Rick M; Teumer, Alexander; van 't Ent, Dennis; van der Meer, Dennis; van Eijk, Kristel R; Vassos, Evangelos; Vázquez-Bourgon, Javier; Witt, Stephanie H; IMAGEN Consortium; Adams, Hieab H H; Agartz, Ingrid; Ames, David; Amunts, Katrin; Andreassen, Ole A; Arango, Celso; Banaschewski, Tobias; Baune, Bernhard T; Belangero, Sintia I; Bokde, Arun L W; Boomsma, Dorret I; Bressan, Rodrigo A; Brodaty, Henry; Buitelaar, Jan K; Cahn, Wiepke; Caspers, Svenja; Cichon, Sven; Crespo-Facorro, Benedicto; Cox, Simon R; Dannlowski, Udo; Elvsåshagen, Torbjørn; Espeseth, Thomas; Falkai, Peter G; Fisher, Simon E; Flor, Herta; Fullerton, Janice M; Garavan, Hugh; Gowland, Penny A; Grabe, Hans J; Hahn, Tim; Heinz, Andreas; Hillegers, Manon; Hoare, Jacqueline; Hoekstra, Pieter J; Ikram, Mohammad A; Jackowski, Andrea P; Jansen, Andreas; Jönsson, Erik G; Kahn, Rene S; Kircher, Tilo; Korgaonkar, Mayuresh S; Krug, Axel; Lemaitre, Herve; Malt, Ulrik F; Martinot, Jean-Luc; McDonald, Colm; Mitchell, Philip B; Muetzel, Ryan L; Murray, Robin M; Nees, Frauke; Nenadić, Igor; Oosterlaan, Jaap; Ophoff, Roel A; Pan, Pedro M; Penninx, Brenda W J H; Poustka, Luise; Sachdev, Perminder S; Salum, Giovanni A; Schofield, Peter R; Schumann, Gunter; Shaw, Philip; Sim, Kang; Smolka, Michael N; Stein, Dan J; Trollor, Julian N; van den Berg, Leonard H; Veldink, Jan H; Walter, Henrik; Westlye, Lars T; Whelan, Robert; White, Tonya; Wright, Margaret J; Medland, Sarah E; Franke, (see original citation for additional authors) |
Nature neuroscience |
35383335 |
2022 Apr |
| Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling. |
Bailey, Andrew D; Talkish, Jason; Ding, Hongxu; Igel, Haller; Duran, Alejandra; Mantripragada, Shreya; Paten, Benedict; Ares, Manuel |
eLife |
35384842 |
2022 Apr 06 |
| Differentiable Optimization of Generalized Nondecomposable Functions using Linear Programs. |
Meng, Zihang; Mukherjee, Lopamudra; Wu, Yichao; Singh, Vikas; Ravi, Sathya N |
Advances in neural information processing systems |
35387382 |
2021 Dec |
| A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies. |
Jiao, Zeyu; Lai, Yinglei; Kang, Jujiao; Gong, Weikang; Ma, Liang; Jia, Tianye; Xie, Chao; Xiang, Shitong; Cheng, Wei; Heinz, Andreas; Desrivières, Sylvane; Schumann, Gunter; IMAGEN Consortium; Sun, Fengzhu; Feng, Jianfeng |
NeuroImage |
35398282 |
2022 07 15 |
| Combined Hypothesis Testing on Graphs with Applications to Gene Set Enrichment Analysis. |
Wang, Shulei; Yuan, Ming |
Journal of the American Statistical Association |
35431372 |
2019 |
| A complete pedigree-based graph workflow for rare candidate variant analysis. |
Markello, Charles; Huang, Charles; Rodriguez, Alex; Carroll, Andrew; Chang, Pi-Chuan; Eizenga, Jordan; Markello, Thomas; Haussler, David; Paten, Benedict |
Genome research |
35483961 |
2022 May |
| Bayesian causal network modeling suggests adolescent cannabis use accelerates prefrontal cortical thinning. |
Owens, Max M; Albaugh, Matthew D; Allgaier, Nicholas; Yuan, Dekang; Robert, Gabriel; Cupertino, Renata B; Spechler, Philip A; Juliano, Anthony; Hahn, Sage; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Lemaitre, Herve; Paus, Tomáš; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Mackey, Scott; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium |
Translational psychiatry |
35523763 |
2022 05 06 |
| Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed. |
Taub, Margaret A; Conomos, Matthew P; Keener, Rebecca; Iyer, Kruthika R; Weinstock, Joshua S; Yanek, Lisa R; Lane, John; Miller-Fleming, Tyne W; Brody, Jennifer A; Raffield, Laura M; McHugh, Caitlin P; Jain, Deepti; Gogarten, Stephanie M; Laurie, Cecelia A; Keramati, Ali; Arvanitis, Marios; Smith, Albert V; Heavner, Benjamin; Barwick, Lucas; Becker, Lewis C; Bis, Joshua C; Blangero, John; Bleecker, Eugene R; Burchard, Esteban G; Celedón, Juan C; Chang, Yen Pei C; Custer, Brian; Darbar, Dawood; de Las Fuentes, Lisa; DeMeo, Dawn L; Freedman, Barry I; Garrett, Melanie E; Gladwin, Mark T; Heckbert, Susan R; Hidalgo, Bertha A; Irvin, Marguerite R; Islam, Talat; Johnson, W Craig; Kaab, Stefan; Launer, Lenore; Lee, Jiwon; Liu, Simin; Moscati, Arden; North, Kari E; Peyser, Patricia A; Rafaels, Nicholas; Seidman, Christine; Weeks, Daniel E; Wen, Fayun; Wheeler, Marsha M; Williams, L Keoki; Yang, Ivana V; Zhao, Wei; Aslibekyan, Stella; Auer, Paul L; Bowden, Donald W; Cade, Brian E; Chen, Zhanghua; Cho, Michael H; Cupples, L Adrienne; Curran, Joanne E; Daya, Michelle; Deka, Ranjan; Eng, Celeste; Fingerlin, Tasha E; Guo, Xiuqing; Hou, Lifang; Hwang, Shih-Jen; Johnsen, Jill M; Kenny, Eimear E; Levin, Albert M; Liu, Chunyu; Minster, Ryan L; Naseri, Take; Nouraie, Mehdi; Reupena, Muagututi'a Sefuiva; Sabino, Ester C; Smith, Jennifer A; Smith, Nicholas L; Su, Jessica Lasky; Taylor, James G; Telen, Marilyn J; Tiwari, Hemant K; Tracy, Russell P; White, Marquitta J; Zhang, Yingze; Wiggins, Kerri L; Weiss, Scott T; Vasan, Ramachandran S; Taylor, Kent D; Sinner, Moritz F; Silverman, Edwin K; Shoemaker, M Benjamin; Sheu, Wayne H-H; Sciurba, Frank; Schwartz, David A; Rotter, Jerome I; Roden, Daniel; Redline, Susan; Raby, Benjamin A; Psaty, Bruce M; Peralta, Juan M; Palmer, Nicholette D; Nekhai, Sergei; Montgomery, Courtney G; Mitchell, Braxton D; Meyers, Deborah A; McGarvey, Stephen T; NHLBI CARE Network; Mak, Angel Cy; Loos, Ruth Jf; Kumar, Rajesh; Kooperberg, Charles; Konkle, Barbara A; Kelly, Shannon; Kardia, Sharon Lr; Kaplan, Robert; He, Jiang; Gui, Hongsheng; Gilliland, Frank D; Gelb, Bruce D; Fornage, Myriam; Ellinor, Patrick T; de Andrade, Mariza; Correa, Adolfo; Chen, Yii-Der Ida; Boerwinkle, Eric; Barnes, Kathleen C; Ashley-Koch, Allison E; Arnett, Donna K; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Hematology and Hemostasis Working Group; TOPMed Structural Variation Working Group; Laurie, Cathy C; Abecasis, Goncalo; Nickerson, Deborah A; Wilson, James G; Rich, Stephen S; Levy, Daniel; Ruczinski, Ingo; Aviv, Abraham; Blackwell, Thomas W; Thornton, Timothy; O'Connell, Jeff; Cox, Nancy J; Perry, James A; Armanios, Mary; Battle, Alexis; Pankratz, Nathan; Reiner, Alexander P; Mathias, Rasika A |
Cell genomics |
35530816 |
2022 Jan 12 |
| Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation. |
Kalyuzhnyy, Anton; Eyers, Patrick A; Eyers, Claire E; Bowler-Barnett, Emily; Martin, Maria J; Sun, Zhi; Deutsch, Eric W; Jones, Andrew R |
Journal of proteome research |
35532924 |
2022 06 03 |
| BD2K Training Coordinating Center's ERuDIte: the Educational Resource Discovery Index for Data Science. |
Ambite, José Luis; Fierro, Lily; Gordon, Jonathan; Burns, Gully A; Geigl, Florian; Lerman, Kristina; Van Horn, John D |
IEEE transactions on emerging topics in computing |
35548703 |
2021 Jan-Mar |
| MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graph. |
Sun, Mengying; Xing, Jing; Wang, Huijun; Chen, Bin; Zhou, Jiayu |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining |
35571558 |
2021 Aug |
| Longitudinal Trajectory of the Link Between Ventral Striatum and Depression in Adolescence. |
Pan, Pedro Mario; Sato, João R; Paillère Martinot, Marie-Laure; Martinot, Jean-Luc; Artiges, Eric; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Ittermann, Bernd; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Whelan, Robert; Schumann, Gunter; Westwater, Margaret L; Grillon, Christian; Cogo-Moreira, Hugo; Stringaris, Argyris; Ernst, Monique; IMAGEN Consortium |
The American journal of psychiatry |
35582783 |
2022 07 |
| Prediction of future healthcare expenses of patients from chest radiographs using deep learning: a pilot study. |
Sohn, Jae Ho; Chen, Yixin; Lituiev, Dmytro; Yang, Jaewon; Ordovas, Karen; Hadley, Dexter; Vu, Thienkhai H; Franc, Benjamin L; Seo, Youngho |
Scientific reports |
35585177 |
2022 May 18 |
| An Ontology for Cardiothoracic Surgical Education and Clinical Data Analytics. |
Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Lokala, Usha; Hadley, Dexter; Sheth, Amit; Beygui, Ramin E |
Studies in health technology and informatics |
35612107 |
2022 May 25 |
| Data Analytics of Electronic Medical Record to Study Racial Diversities in Cardiovascular Diagnosis and Treatment. |
Panahiazar, Maryam; Chern, Yorick; Riojas, Ramon; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E |
Studies in health technology and informatics |
35612140 |
2022 May 25 |
| Defining mitochondrial protein functions through deep multiomic profiling. |
Rensvold, Jarred W; Shishkova, Evgenia; Sverchkov, Yuriy; Miller, Ian J; Cetinkaya, Arda; Pyle, Angela; Manicki, Mateusz; Brademan, Dain R; Alanay, Yasemin; Raiman, Julian; Jochem, Adam; Hutchins, Paul D; Peters, Sean R; Linke, Vanessa; Overmyer, Katherine A; Salome, Austin Z; Hebert, Alexander S; Vincent, Catherine E; Kwiecien, Nicholas W; Rush, Matthew J P; Westphall, Michael S; Craven, Mark; Akarsu, Nurten A; Taylor, Robert W; Coon, Joshua J; Pagliarini, David J |
Nature |
35614220 |
2022 06 |
| Redefining breast cancer subtypes to guide treatment prioritization and maximize response: Predictive biomarkers across 10 cancer therapies. |
Wolf, Denise M; Yau, Christina; Wulfkuhle, Julia; Brown-Swigart, Lamorna; Gallagher, Rosa I; Lee, Pei Rong Evelyn; Zhu, Zelos; Magbanua, Mark J; Sayaman, Rosalyn; O'Grady, Nicholas; Basu, Amrita; Delson, Amy; Coppé, Jean Philippe; Lu, Ruixiao; Braun, Jerome; I-SPY2 Investigators; Asare, Smita M; Sit, Laura; Matthews, Jeffrey B; Perlmutter, Jane; Hylton, Nola; Liu, Minetta C; Pohlmann, Paula; Symmans, W Fraser; Rugo, Hope S; Isaacs, Claudine; DeMichele, Angela M; Yee, Douglas; Berry, Donald A; Pusztai, Lajos; Petricoin, Emanuel F; Hirst, Gillian L; Esserman, Laura J; van 't Veer, Laura J |
Cancer cell |
35623341 |
2022 06 13 |
| Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. |
Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B; Alexander, Andrew L; Landman, Bennett A; Canales-Rodríguez, Erick J; Barakovic, Muhamed; Rafael-Patino, Jonathan; Yu, Thomas; Rensonnet, Gaëtan; Schiavi, Simona; Daducci, Alessandro; Pizzolato, Marco; Fischi-Gomez, Elda; Thiran, Jean-Philippe; Dai, George; Grisot, Giorgia; Lazovski, Nikola; Puch, Santi; Ramos, Marc; Rodrigues, Paulo; Prčkovska, Vesna; Jones, Robert; Lehman, Julia; Haber, Suzanne N; Yendiki, Anastasia |
NeuroImage |
35636227 |
2022 08 15 |
| Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. |
Ramsbottom, Kerry A; Prakash, Ananth; Riverol, Yasset Perez; Camacho, Oscar Martin; Martin, Maria-Jesus; Vizcaíno, Juan Antonio; Deutsch, Eric W; Jones, Andrew R |
Journal of proteome research |
35640880 |
2022 Jul 01 |
| Data Analytics of Electronic Health Records to Enhance Care of Coronary Artery Disease in Younger Women with Avoiding Possible Delay in Treatment. |
Panahiazar, Maryam; Bishara, Andrew M; Chern, Yorick; Alizadehsani, Roohallah; Latif, Omar S; Hadley, Dexter; Beygui, Ramin E |
Studies in health technology and informatics |
35673215 |
2022 Jun 06 |
| The GA4GH Phenopacket schema defines a computable representation of clinical data. |
Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N |
Nature biotechnology |
35705716 |
2022 Jun |
| Biomedical Literature Mining for Repurposing Laboratory Tests. |
Kuusisto, Finn; Kleiman, Ross; Weiss, Jeremy |
Methods in molecular biology (Clifton, N.J.) |
35713860 |
2022 |
| Harmonizing PTSD severity scales across instruments and sites. |
Kennedy, Eamonn; Dennis, Emily L; Lindsey, Hannah M; deRoon-Cassini, Terri; Du Plessis, Stefan; Fani, Negar; Kaufman, Milissa L; Koen, Nastassja; Larson, Christine L; Laskowitz, Sarah; Lebois, Lauren A M; Morey, Rajendra A; Newsome, Mary R; Palermo, Cori; Pastorek, Nicholas J; Powers, Abigail; Scheibel, Randall; Seedat, Soraya; Seligowski, Antonia; Stein, Dan J; Stevens, Jennifer; Sun, Delin; Thompson, Paul; Troyanskaya, Maya; van Rooij, Sanne J H; Watts, Amanda A; Tomas, Carissa W; Williams, Wright; Hillary, Frank G; Pugh, Mary Jo; Wilde, Elisabeth A; Tate, David F |
Neuropsychology |
35797175 |
2022 Jul 07 |
| Standardized annotation of translated open reading frames. |
Mudge, Jonathan M; Ruiz-Orera, Jorge; Prensner, John R; Brunet, Marie A; Calvet, Ferriol; Jungreis, Irwin; Gonzalez, Jose Manuel; Magrane, Michele; Martinez, Thomas F; Schulz, Jana Felicitas; Yang, Yucheng T; Albà, M Mar; Aspden, Julie L; Baranov, Pavel V; Bazzini, Ariel A; Bruford, Elspeth; Martin, Maria Jesus; Calviello, Lorenzo; Carvunis, Anne-Ruxandra; Chen, Jin; Couso, Juan Pablo; Deutsch, Eric W; Flicek, Paul; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Ingolia, Nicholas T; Kellis, Manolis; Menschaert, Gerben; Moritz, Robert L; Ohler, Uwe; Roucou, Xavier; Saghatelian, Alan; Weissman, Jonathan S; van Heesch, Sebastiaan |
Nature biotechnology |
35831657 |
2022 Jul |
| Getting Started with LINCS Datasets and Tools. |
Xie, Zhuorui; Kropiwnicki, Eryk; Wojciechowicz, Megan L; Jagodnik, Kathleen M; Shu, Ingrid; Bailey, Allison; Clarke, Daniel J B; Jeon, Minji; Evangelista, John Erol; V Kuleshov, Maxim; Lachmann, Alexander; Parigi, Abhijna A; Sanchez, Jose M; Jenkins, Sherry L; Ma'ayan, Avi |
Current protocols |
35876555 |
2022 Jul |
| Neuroanatomical heterogeneity and homogeneity in individuals at clinical high risk for psychosis. |
Baldwin, Helen; Radua, Joaquim; Antoniades, Mathilde; Haas, Shalaila S; Frangou, Sophia; Agartz, Ingrid; Allen, Paul; Andreassen, Ole A; Atkinson, Kimberley; Bachman, Peter; Baeza, Inmaculada; Bartholomeusz, Cali F; Chee, Michael W L; Colibazzi, Tiziano; Cooper, Rebecca E; Corcoran, Cheryl M; Cropley, Vanessa L; Ebdrup, Bjørn H; Fortea, Adriana; Glenthøj, Louise Birkedal; Hamilton, Holly K; Haut, Kristen M; Hayes, Rebecca A; He, Ying; Heekeren, Karsten; Kaess, Michael; Kasai, Kiyoto; Katagiri, Naoyuki; Kim, Minah; Kindler, Jochen; Klaunig, Mallory J; Koike, Shinsuke; Koppel, Alex; Kristensen, Tina D; Bin Kwak, Yoo; Kwon, Jun Soo; Lawrie, Stephen M; Lebedeva, Irina; Lee, Jimmy; Lin, Ashleigh; Loewy, Rachel L; Mathalon, Daniel H; Michel, Chantal; Mizrahi, Romina; Møller, Paul; Nelson, Barnaby; Nemoto, Takahiro; Nordholm, Dorte; Omelchenko, Maria A; Pantelis, Christos; Raghava, Jayachandra M; Røssberg, Jan I; Rössler, Wulf; Salisbury, Dean F; Sasabayashi, Daiki; Schall, Ulrich; Smigielski, Lukasz; Sugranyes, Gisela; Suzuki, Michio; Takahashi, Tsutomu; Tamnes, Christian K; Tang, Jinsong; Theodoridou, Anastasia; Thomopoulos, Sophia I; Tomyshev, Alexander S; Uhlhaas, Peter J; Værnes, Tor G; van Amelsvoort, Therese A M J; Van Erp, Theo G M; Waltz, James A; Westlye, Lars T; Wood, Stephen J; Zhou, Juan H; McGuire, Philip; Thompson, Paul M; Jalbrzikowski, Maria; Hernaus, Dennis; Fusar-Poli, Paolo; ENIGMA Clinical High Risk for Psychosis Working Group |
Translational psychiatry |
35882855 |
2022 07 26 |
| Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression. |
Larivière, Sara; Royer, Jessica; Rodríguez-Cruces, Raúl; Paquola, Casey; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa L; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Domin, Martin; von Podewills, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; Martin, Pascal; Kotikalapudi, Raviteja; O'Brien, Terence J; Sinclair, Benjamin; Vivash, Lucy; Desmond, Patricia M; Lui, Elaine; Vaudano, Anna Elisabetta; Meletti, Stefano; Tondelli, Manuela; Alhusaini, Saud; Doherty, Colin P; Cavalleri, Gianpiero L; Delanty, Norman; Kälviäinen, Reetta; Jackson, Graeme D; Kowalczyk, Magdalena; Mascalchi, Mario; Semmelroch, Mira; Thomas, Rhys H; Soltanian-Zadeh, Hamid; Davoodi-Bojd, Esmaeil; Zhang, Junsong; Winston, Gavin P; Griffin, Aoife; Singh, Aditi; Tiwari, Vijay K; Kreilkamp, Barbara A K; Lenge, Matteo; Guerrini, Renzo; Hamandi, Khalid; Foley, Sonya; Rüber, Theodor; Weber, Bernd; Depondt, Chantal; Absil, Julie; Carr, Sarah J A; Abela, Eugenio; Richardson, Mark P; Devinsky, Orrin; Severino, Mariasavina; Striano, Pasquale; Tortora, Domenico; Kaestner, Erik; Hatton, Sean N; Vos, Sjoerd B; Caciagli, Lorenzo; Duncan, John S; Whelan, Christopher D; Thompson, Paul M; Sisodiya, Sanjay M; Bernasconi, Andrea; Labate, Angelo; McDonald, Carrie R; Bernasconi, Neda; Bernhardt, Boris C |
Nature communications |
35896547 |
2022 07 27 |
| Longitudinal trajectories of cortical development in 22q11.2 copy number variants and typically developing controls. |
Jalbrzikowski, Maria; Lin, Amy; Vajdi, Ariana; Grigoryan, Vardui; Kushan, Leila; Ching, Christopher R K; Schleifer, Charles; Hayes, Rebecca A; Chu, Stephanie A; Sugar, Catherine A; Forsyth, Jennifer K; Bearden, Carrie E |
Molecular psychiatry |
35896619 |
2022 Oct |
| Correlation Analysis of Variables From the Atherosclerosis Risk in Communities Study. |
Mandal, Meisha; Levy, Josh; Ives, Cataia; Hwang, Stephen; Zhou, Yi-Hui; Motsinger-Reif, Alison; Pan, Huaqin; Huggins, Wayne; Hamilton, Carol; Wright, Fred; Edwards, Stephen |
Frontiers in pharmacology |
35899108 |
2022 |
| A comparison of methods to harmonize cortical thickness measurements across scanners and sites. |
Sun, Delin; Rakesh, Gopalkumar; Haswell, Courtney C; Logue, Mark; Baird, C Lexi; O'Leary, Erin N; Cotton, Andrew S; Xie, Hong; Tamburrino, Marijo; Chen, Tian; Dennis, Emily L; Jahanshad, Neda; Salminen, Lauren E; Thomopoulos, Sophia I; Rashid, Faisal; Ching, Christopher R K; Koch, Saskia B J; Frijling, Jessie L; Nawijn, Laura; van Zuiden, Mirjam; Zhu, Xi; Suarez-Jimenez, Benjamin; Sierk, Anika; Walter, Henrik; Manthey, Antje; Stevens, Jennifer S; Fani, Negar; van Rooij, Sanne J H; Stein, Murray; Bomyea, Jessica; Koerte, Inga K; Choi, Kyle; van der Werff, Steven J A; Vermeiren, Robert R J M; Herzog, Julia; Lebois, Lauren A M; Baker, Justin T; Olson, Elizabeth A; Straube, Thomas; Korgaonkar, Mayuresh S; Andrew, Elpiniki; Zhu, Ye; Li, Gen; Ipser, Jonathan; Hudson, Anna R; Peverill, Matthew; Sambrook, Kelly; Gordon, Evan; Baugh, Lee; Forster, Gina; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent; Maron-Katz, Adi; du Plessis, Stefan; Disner, Seth G; Davenport, Nicholas; Grupe, Daniel W; Nitschke, Jack B; deRoon-Cassini, Terri A; Fitzgerald, Jacklynn M; Krystal, John H; Levy, Ifat; Olff, Miranda; Veltman, Dick J; Wang, Li; Neria, Yuval; De Bellis, Michael D; Jovanovic, Tanja; Daniels, Judith K; Shenton, Martha; van de Wee, Nic J A; Schmahl, Christian; Kaufman, Milissa L; Rosso, Isabelle M; Sponheim, Scott R; Hofmann, David Bernd; Bryant, Richard A; Fercho, Kelene A; Stein, Dan J; Mueller, Sven C; Hosseini, Bobak; Phan, K Luan; McLaughlin, Katie A; Davidson, Richard J; Larson, Christine L; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Gomaa, Hassaan; Etkin, Amit; Seedat, Soraya; Harpaz-Rotem, Ilan; Liberzon, Israel; van Erp, Theo G M; Quidé, Yann; Wang, Xin; Thompson, Paul M; Morey, Rajendra A |
NeuroImage |
35917919 |
2022 11 01 |
| Practical and Efficient in-Enclave Verification of Privacy Compliance. |
Liu, Weijie; Wang, Wenhao; Chen, Hongbo; Wang, XiaoFeng; Lu, Yaosong; Chen, Kai; Wang, Xinyu; Shen, Qintao; Chen, Yi; Tang, Haixu |
Proceedings. International Conference on Dependable Systems and Networks |
35919377 |
2021 Jun |
| Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis. |
Tetikol, H Serhat; Turgut, Deniz; Narci, Kubra; Budak, Gungor; Kalay, Ozem; Arslan, Elif; Demirkaya-Budak, Sinem; Dolgoborodov, Alexey; Kabakci-Zorlu, Duygu; Semenyuk, Vladimir; Jain, Amit; Davis-Dusenbery, Brandi N |
Nature communications |
35927245 |
2022 Aug 04 |
| Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. |
Hansen, Justine Y; Shafiei, Golia; Vogel, Jacob W; Smart, Kelly; Bearden, Carrie E; Hoogman, Martine; Franke, Barbara; van Rooij, Daan; Buitelaar, Jan; McDonald, Carrie R; Sisodiya, Sanjay M; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; van Erp, Theo G M; Ching, Christopher R K; Andreassen, Ole A; Hajek, Tomas; Opel, Nils; Modinos, Gemma; Aleman, André; van der Werf, Ysbrand; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Carson, Richard E; Dagher, Alain; Misic, Bratislav |
Nature communications |
35948562 |
2022 08 10 |
| From cirrhosis to hepatocellular carcinoma: An investigation into hepatitis C viral oncogenesis. |
Aljabban, Jihad; Danis, Nilay; Gurakar, Merve; Khorfan, Kamal; Aljabban, Nabeal; Simsek, Cem; Salhi, Hussam; Panahiazar, Maryam; Hadley, Dexter; Gurakar, Ahmet; Saberi, Behnam |
Hepatology forum |
35949665 |
2020 Jan |
| GAWMerge expands GWAS sample size and diversity by combining array-based genotyping and whole-genome sequencing. |
Mathur, Ravi; Fang, Fang; Gaddis, Nathan; Hancock, Dana B; Cho, Michael H; Hokanson, John E; Bierut, Laura J; Lutz, Sharon M; Young, Kendra; Smith, Albert V; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Silverman, Edwin K; Page, Grier P; Johnson, Eric O |
Communications biology |
35953715 |
2022 08 11 |
| CUF-Links: Continuous and Ubiquitous FAIRness Linkages for reproducible research. |
Foster, Ian; Kesselman, Carl |
Computer |
35979414 |
2022 Aug |
| Inference of putative cell-type-specific imprinted regulatory elements and genes during human neuronal differentiation. |
Liang, Dan; Aygün, Nil; Matoba, Nana; Ideraabdullah, Folami Y; Love, Michael I; Stein, Jason L |
Human molecular genetics |
35994039 |
2023 Jan 13 |
| Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis. |
Ahangari, Farida; Becker, Christine; Foster, Daniel G; Chioccioli, Maurizio; Nelson, Meghan; Beke, Keriann; Wang, Xing; Justet, Aurelien; Adams, Taylor; Readhead, Benjamin; Meador, Carly; Correll, Kelly; Lili, Loukia N; Roybal, Helen M; Rose, Kadi-Ann; Ding, Shuizi; Barnthaler, Thomas; Briones, Natalie; DeIuliis, Giuseppe; Schupp, Jonas C; Li, Qin; Omote, Norihito; Aschner, Yael; Sharma, Lokesh; Kopf, Katrina W; Magnusson, Björn; Hicks, Ryan; Backmark, Anna; Dela Cruz, Charles S; Rosas, Ivan; Cousens, Leslie P; Dudley, Joel T; Kaminski, Naftali; Downey, Gregory P |
American journal of respiratory and critical care medicine |
35998281 |
2022 Dec 15 |
| Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014. |
Lagrada, Marietta L; Argimón, Silvia; Borlasa, Janice B; Abad, Jaywardeen P; Gayeta, June M; Masim, Melissa L; Olorosa, Agnettah M; Cohen, Victoria; Jeffrey, Benjamin; Abudahab, Khalil; Sia, Sonia B; Hufano, Charmian M; Stelling, John; Holden, Matthew T G; Aanensen, David M; Carlos, Celia C |
Transactions of the Royal Society of Tropical Medicine and Hygiene |
35999186 |
2022 Dec 02 |
| Brain Structure in Acutely Underweight and Partially Weight-Restored Individuals With Anorexia Nervosa: A Coordinated Analysis by the ENIGMA Eating Disorders Working Group. |
Walton, Esther; Bernardoni, Fabio; Batury, Victoria-Luise; Bahnsen, Klaas; Larivière, Sara; Abbate-Daga, Giovanni; Andres-Perpiña, Susana; Bang, Lasse; Bischoff-Grethe, Amanda; Brooks, Samantha J; Campbell, Iain C; Cascino, Giammarco; Castro-Fornieles, Josefina; Collantoni, Enrico; D'Agata, Federico; Dahmen, Brigitte; Danner, Unna N; Favaro, Angela; Feusner, Jamie D; Frank, Guido K W; Friederich, Hans-Christoph; Graner, John L; Herpertz-Dahlmann, Beate; Hess, Andreas; Horndasch, Stefanie; Kaplan, Allan S; Kaufmann, Lisa-Katrin; Kaye, Walter H; Khalsa, Sahib S; LaBar, Kevin S; Lavagnino, Luca; Lazaro, Luisa; Manara, Renzo; Miles, Amy E; Milos, Gabriella F; Monteleone, Alessio Maria; Monteleone, Palmiero; Mwangi, Benson; O'Daly, Owen; Pariente, Jose; Roesch, Julie; Schmidt, Ulrike H; Seitz, Jochen; Shott, Megan E; Simon, Joe J; Smeets, Paul A M; Tamnes, Christian K; Tenconi, Elena; Thomopoulos, Sophia I; van Elburg, Annemarie A; Voineskos, Aristotle N; von Polier, Georg G; Wierenga, Christina E; Zucker, Nancy L; Jahanshad, Neda; King, Joseph A; Thompson, Paul M; Berner, Laura A; Ehrlich, Stefan |
Biological psychiatry |
36031441 |
2022 11 01 |
| Sharing Begins at Home: How Continuous and Ubiquitous FAIRness Can Enhance Research Productivity and Data Reuse. |
Dempsey, William; Foster, Ian; Fraser, Scott; Kesselman, Carl |
Harvard data science review |
36035065 |
2022 |
| A Just-In-Time Adaptive intervention (JITAI) for smoking cessation: Feasibility and acceptability findings. |
Yang, Min-Jeong; Sutton, Steven K; Hernandez, Laura M; Jones, Sarah R; Wetter, David W; Kumar, Santosh; Vinci, Christine |
Addictive behaviors |
36037610 |
2023 Jan |
| Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-analysis. |
Bas-Hoogendam, Janna Marie; Bernstein, Rachel; Benson, Brenda E; Buss, Kristin A; Gunther, Kelley E; Pérez-Edgar, Koraly; Salum, Giovanni A; Jackowski, Andrea P; Bressan, Rodrigo A; Zugman, André; Degnan, Kathryn A; Filippi, Courtney A; Fox, Nathan A; Henderson, Heather A; Tang, Alva; Zeytinoglu, Selin; Harrewijn, Anita; Hillegers, Manon H J; White, Tonya; van IJzendoorn, Marinus H; Schwartz, Carl E; Felicione, Julia M; DeYoung, Kathryn A; Shackman, Alexander J; Smith, Jason F; Tillman, Rachael M; van den Berg, Yvonne H M; Cillessen, Antonius H N; Roelofs, Karin; Tyborowska, Anna; Hill, Shirley Y; Battaglia, Marco; Tettamanti, Marco; Dougherty, Lea R; Jin, Jingwen; Klein, Daniel N; Leung, Hoi-Chung; Avery, Suzanne N; Blackford, Jennifer Urbano; Clauss, Jacqueline A; Hayden, Elizabeth P; Liu, Pan; Vandermeer, Matthew R J; Goldsmith, H Hill; Planalp, Elizabeth M; Nichols, Thomas E; Thompson, Paul M; Westenberg, P Michiel; van der Wee, Nic J A; Groenewold, Nynke A; Stein, Dan J; Winkler, Anderson M; Pine, Daniel S; ENIGMA-Anxiety Working Group |
Journal of the American Academy of Child and Adolescent Psychiatry |
36038199 |
2022 Sep |
| Associations of medication with subcortical morphology across the lifespan in OCD: Results from the international ENIGMA Consortium. |
Ivanov, Iliyan; Boedhoe, Premika S W; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Arnold, Paul D; Balachander, Srinivas; Baker, Justin T; Banaj, Nerisa; Bargalló, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Brem, Silvia; Brennan, Brian P; Buitelaar, Jan; Calvo, Rosa; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Diniz, Juliana B; Ely, Benjamin A; Feusner, Jamie D; Ferreira, Sónia; Fitzgerald, Kate D; Fontaine, Martine; Gruner, Patricia; Hanna, Gregory L; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Ikari, Keisuke; James, Anthony; Jaspers-Fayer, Fern; Jiang, Hongyan; Kathmann, Norbert; Kaufmann, Christian; Kim, Minah; Koch, Kathrin; Kwon, Jun Soo; Lázaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Morer, Astrid; Morgado, Pedro; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Oh, Sanghoon; Perriello, Chris; Piacentini, John C; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Reddy, Y C Janardhan; Manrique, Daniela Rodriguez; Sakai, Yuki; Shimizu, Eiji; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Szeszko, Philip R; Tolin, David F; van Rooij, Daan; Veltman, Dick J; van der Werf, Ysbrand D; van Wingen, Guido A; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; Watanabe, Anri; Wolters, Lidewij H; Xu, Xiufeng; Yun, Je-Yeon; Zarei, Mojtaba; Zhang, Fengrui; Zhao, Qing; Jahanshad, Neda; Thomopoulos, Sophia I; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; O'Neill, Joseph; ENIGMA-OCD Working Group |
Journal of affective disorders |
36041582 |
2022 12 01 |
| Brain functional connectivity mirrors genetic pleiotropy in psychiatric conditions. |
Moreau, Clara A; Kumar, Kuldeep; Harvey, Annabelle; Huguet, Guillaume; Urchs, Sebastian G W; Schultz, Laura M; Sharmarke, Hanad; Jizi, Khadije; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Martineau, Jean-Louis; Orban, Pierre; Silva, Ana Isabel; Hall, Jeremy; van den Bree, Marianne B M; Owen, Michael J; Linden, David E J; Lippé, Sarah; Bearden, Carrie E; Almasy, Laura; Glahn, David C; Thompson, Paul M; Bourgeron, Thomas; Bellec, Pierre; Jacquemont, Sebastien |
Brain : a journal of neurology |
36059063 |
2023 Apr 19 |
| Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. |
Jones, Andrew R; Deutsch, Eric W; Vizcaíno, Juan Antonio |
Proteomics |
36074795 |
2022 Sep 08 |
| Deciphering COVID-19 host transcriptomic complexity and variations for therapeutic discovery against new variants. |
Xing, Jing; Shankar, Rama; Ko, Meehyun; Zhang, Keke; Zhang, Sulin; Drelich, Aleksandra; Paithankar, Shreya; Chekalin, Eugene; Chua, Mei-Sze; Rajasekaran, Surender; Kent Tseng, Chien-Te; Zheng, Mingyue; Kim, Seungtaek; Chen, Bin |
iScience |
36093376 |
2022 Oct 21 |
| Shape analysis of subcortical structures in obsessive-compulsive disorder and the relationship with comorbid anxiety, depression, and medication use: A meta-analysis by the OCD Brain Imaging Consortium. |
Fouche, Jean-Paul; Groenewold, Nynke A; Sevenoaks, Tatum; Heany, Sarah; Lochner, Christine; Alonso, Pino; Batistuzzo, Marcelo C; Cardoner, Narcis; Ching, Christopher R K; de Wit, Stella J; Gutman, Boris; Hoexter, Marcelo Q; Jahanshad, Neda; Kim, Minah; Kwon, Jun Soo; Mataix-Cols, David; Menchon, Jose M; Miguel, Euripedes C; Nakamae, Takashi; Phillips, Mary L; Pujol, Jesus; Sakai, Yuki; Yun, Je-Yeon; Soriano-Mas, Carles; Thompson, Paul M; Yamada, Kei; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J |
Brain and behavior |
36106505 |
2022 10 |
| Transcriptome changes in stages of non-alcoholic fatty liver disease. |
Aljabban, Jihad; Rohr, Michael; Syed, Saad; Khorfan, Kamal; Borkowski, Vincent; Aljabban, Hisham; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Panahiazar, Maryam; Hadley, Dexter; Spengler, Ryan; Spengler, Erin |
World journal of hepatology |
36158924 |
2022 Jul 27 |
| Multiscale neural gradients reflect transdiagnostic effects of major psychiatric conditions on cortical morphology. |
Park, Bo-Yong; Kebets, Valeria; Larivière, Sara; Hettwer, Meike D; Paquola, Casey; van Rooij, Daan; Buitelaar, Jan; Franke, Barbara; Hoogman, Martine; Schmaal, Lianne; Veltman, Dick J; van den Heuvel, Odile A; Stein, Dan J; Andreassen, Ole A; Ching, Christopher R K; Turner, Jessica A; van Erp, Theo G M; Evans, Alan C; Dagher, Alain; Thomopoulos, Sophia I; Thompson, Paul M; Valk, Sofie L; Kirschner, Matthias; Bernhardt, Boris C |
Communications biology |
36168040 |
2022 09 27 |
| Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. |
Taubes, Alice; Nova, Phil; Zalocusky, Kelly A; Kosti, Idit; Bicak, Mesude; Zilberter, Misha Y; Hao, Yanxia; Yoon, Seo Yeon; Oskotsky, Tomiko; Pineda, Silvia; Chen, Bin; Jones, Emily A Aery; Choudhary, Krishna; Grone, Brian; Balestra, Maureen E; Chaudhry, Fayzan; Paranjpe, Ishan; De Freitas, Jessica; Koutsodendris, Nicole; Chen, Nuo; Wang, Celine; Chang, William; An, Alice; Glicksberg, Benjamin S; Sirota, Marina; Huang, Yadong |
Nature aging |
36172600 |
2021 Oct |
| Dissecting novel mechanisms of hepatitis B virus related hepatocellular carcinoma using meta-analysis of public data. |
Aljabban, Jihad; Rohr, Michael; Syed, Saad; Cohen, Eli; Hashi, Naima; Syed, Sharjeel; Khorfan, Kamal; Aljabban, Hisham; Borkowski, Vincent; Segal, Michael; Mukhtar, Mohamed; Mohammed, Mohammed; Boateng, Emmanuel; Nemer, Mary; Panahiazar, Maryam; Hadley, Dexter; Jalil, Sajid; Mumtaz, Khalid |
World journal of gastrointestinal oncology |
36187396 |
2022 Sep 15 |
| Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis. |
Aksit, Melis A; Ling, Hua; Pace, Rhonda G; Raraigh, Karen S; Onchiri, Frankline; Faino, Anna V; Pagel, Kymberleigh; Pugh, Elizabeth; Stilp, Adrienne M; Sun, Quan; Blue, Elizabeth E; Wright, Fred A; Zhou, Yi-Hui; Bamshad, Michael J; Gibson, Ronald L; Knowles, Michael R; Cutting, Garry R; Blackman, Scott M; CF Genome Project |
American journal of human genetics |
36206743 |
2022 Oct 06 |
| Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. |
Matentzoglu, Nicolas; Goutte-Gattat, Damien; Tan, Shawn Zheng Kai; Balhoff, James P; Carbon, Seth; Caron, Anita R; Duncan, William D; Flack, Joe E; Haendel, Melissa; Harris, Nomi L; Hogan, William R; Hoyt, Charles Tapley; Jackson, Rebecca C; Kim, HyeongSik; Kir, Huseyin; Larralde, Martin; McMurry, Julie A; Overton, James A; Peters, Bjoern; Pilgrim, Clare; Stefancsik, Ray; Robb, Sofia Mc; Toro, Sabrina; Vasilevsky, Nicole A; Walls, Ramona; Mungall, Christopher J; Osumi-Sutherland, David |
Database : the journal of biological databases and curation |
36208225 |
2022 Oct 08 |
| Assessing general versus specific liability for externalizing problems in adolescence: Concurrent and prospective prediction of symptoms of conduct disorder, ADHD, and substance use. |
Perkins, Emily R; Joyner, Keanan J; Foell, Jens; Drislane, Laura E; Brislin, Sarah J; Frick, Paul J; Yancey, James R; Soto, Elia F; Ganley, Colleen M; Keel, Pamela K; Sica, Claudio; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; The Imagen Consortium; Patrick, Christopher J |
Journal of psychopathology and clinical science |
36222627 |
2022 Oct |
| Decoding the transcriptome of calcified atherosclerotic plaque at single-cell resolution. |
Alsaigh, Tom; Evans, Doug; Frankel, David; Torkamani, Ali |
Communications biology |
36224302 |
2022 Oct 12 |
| Psychotic Like Experiences in Healthy Adolescents are Underpinned by Lower Fronto-Temporal Cortical Gyrification: a Study from the IMAGEN Consortium. |
Maitra, Raka; Horne, Charlotte M; O'Daly, Owen; Papanastasiou, Evangelos; Gaser, Christian; IMAGEN list of authors; IMAGEN Consortium |
Schizophrenia bulletin |
36226895 |
2023 Mar 15 |
| Probing predilection to Crohn's disease and Crohn's disease flares: A crowd-sourced bioinformatics approach. |
Aljabban, Jihad; Rohr, Michael; Borkowski, Vincent J; Nemer, Mary; Cohen, Eli; Hashi, Naima; Aljabban, Hisham; Boateng, Emmanuel; Syed, Saad; Mohammed, Mohammed; Mukhtar, Ali; Hadley, Dexter; Panahiazar, Maryam |
Journal of pathology informatics |
36268056 |
2022 |
| Reversal of cancer gene expression identifies repurposed drugs for diffuse intrinsic pontine glioma. |
Zhao, Guisheng; Newbury, Patrick; Ishi, Yukitomo; Chekalin, Eugene; Zeng, Billy; Glicksberg, Benjamin S; Wen, Anita; Paithankar, Shreya; Sasaki, Takahiro; Suri, Amreena; Nazarian, Javad; Pacold, Michael E; Brat, Daniel J; Nicolaides, Theodore; Chen, Bin; Hashizume, Rintaro |
Acta neuropathologica communications |
36274161 |
2022 Oct 23 |
| Progressive Spinal Cord Degeneration in Friedreich's Ataxia: Results from ENIGMA-Ataxia. |
Rezende, Thiago J R; Adanyeguh, Isaac M; Arrigoni, Filippo; Bender, Benjamin; Cendes, Fernando; Corben, Louise A; Deistung, Andreas; Delatycki, Martin; Dogan, Imis; Egan, Gary F; Göricke, Sophia L; Georgiou-Karistianis, Nellie; Henry, Pierre-Gilles; Hutter, Diane; Jahanshad, Neda; Joers, James M; Lenglet, Christophe; Lindig, Tobias; Martinez, Alberto R M; Martinuzzi, Andrea; Paparella, Gabriella; Peruzzo, Denis; Reetz, Kathrin; Romanzetti, Sandro; Schöls, Ludger; Schulz, Jörg B; Synofzik, Matthis; Thomopoulos, Sophia I; Thompson, Paul M; Timmann, Dagmar; Harding, Ian H; França Jr, Marcondes C |
Movement disorders : official journal of the Movement Disorder Society |
36308733 |
2022 Oct 29 |
| Evaluating and Extending the Informed Consent Ontology for Representing Permissions from the Clinical Domain. |
Umberfield, Elizabeth E; Stansbury, Cooper; Ford, Kathleen; Jiang, Yun; Kardia, Sharon L R; Thomer, Andrea K; Harris, Marcelline R |
Applied ontology |
36312514 |
2022 |
| The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Pineau, Charles; Packer, Nicolle H; Cristea, Ileana M; Lindskog, Cecilia; Weintraub, Susan T; Orchard, Sandra; Roehrl, Michael H A; Nice, Edouard; Liu, Siqi; Bandeira, Nuno; Chen, Yu-Ju; Guo, Tiannan; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W |
Journal of proteome research |
36318223 |
2023 Apr 07 |
| Relationships between physical activity, healthy eating and cortical thickness in children and young adults. |
Angelo, Brendan C; DeFendis, Alexis; Yau, Anita; Alves, Jasmin M; Thompson, Paul M; Xiang, Anny H; Page, Kathleen A; Luo, Shan |
Brain imaging and behavior |
36319908 |
2022 Nov 02 |
| Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness. |
Kowalczyk, Amanda; Chikina, Maria; Clark, Nathan |
eLife |
36342464 |
2022 Nov 07 |
| Arc controls alcohol cue relapse by a central amygdala mechanism. |
Pagano, Roberto; Salamian, Ahmad; Zielinski, Janusz; Beroun, Anna; Nalberczak-Skóra, Maria; Skonieczna, Edyta; Cały, Anna; Tay, Nicole; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; IMAGEN consortium; Kalita, Katarzyna; Bito, Haruhiko; Müller, Christian P; Schumann, Gunter; Okuno, Hiroyuki; Radwanska, Kasia |
Molecular psychiatry |
36357670 |
2023 Feb |
| The ProteomeXchange consortium at 10 years: 2023 update. |
Deutsch, Eric W; Bandeira, Nuno; Perez-Riverol, Yasset; Sharma, Vagisha; Carver, Jeremy J; Mendoza, Luis; Kundu, Deepti J; Wang, Shengbo; Bandla, Chakradhar; Kamatchinathan, Selvakumar; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan Antonio |
Nucleic acids research |
36370099 |
2022 Nov 12 |
| Genetic Heterogeneity Shapes Brain Connectivity in Psychiatry. |
Moreau, Clara A; Harvey, Annabelle; Kumar, Kuldeep; Huguet, Guillaume; Urchs, Sebastian G W; Douard, Elise A; Schultz, Laura M; Sharmarke, Hanad; Jizi, Khadije; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Rolland, Thomas; Martineau, Jean-Louis; Orban, Pierre; Silva, Ana Isabel; Hall, Jeremy; van den Bree, Marianne B M; Owen, Michael J; Linden, David E J; Labbe, Aurelie; Lippé, Sarah; Bearden, Carrie E; Almasy, Laura; Glahn, David C; Thompson, Paul M; Bourgeron, Thomas; Bellec, Pierre; Jacquemont, Sebastien |
Biological psychiatry |
36372570 |
2023 Jan 01 |
| Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia. |
Wen, Jia; Trost, Brett; Engchuan, Worrawat; Halvorsen, Matthew; Pallotto, Linda M; Mitina, Aleksandra; Ancalade, NaEshia; Farrell, Martilias; Backstrom, Ian; Guo, Keyi; Pellecchia, Giovanna; Thiruvahindrapuram, Bhooma; Giusti-Rodriguez, Paola; Rosen, Jonathan David; Li, Yun; Won, Hyejung; Magnusson, Patrik K E; Gyllensten, Ulf; Bassett, Anne S; Hultman, Christina M; Sullivan, Patrick F; Yuen, Ryan K C; Szatkiewicz, Jin P |
Molecular psychiatry |
36380236 |
2023 Jan |
| DataSifterText: Partially Synthetic Text Generation for Sensitive Clinical Notes. |
Zhou, Nina; Wu, Qiucheng; Wu, Zewen; Marino, Simeone; Dinov, Ivo D |
Journal of medical systems |
36380246 |
2022 Nov 16 |
| Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator. |
Arora, Ayush; Lituiev, Dmytro; Jain, Deeptee; Hadley, Dexter; Butte, Atul J; Berven, Sigurd; Peterson, Thomas A |
Spine |
36398784 |
2023 Jan 01 |
| Making Common Fund data more findable: catalyzing a data ecosystem. |
Charbonneau, Amanda L; Brady, Arthur; Czajkowski, Karl; Aluvathingal, Jain; Canchi, Saranya; Carter, Robert; Chard, Kyle; Clarke, Daniel J B; Crabtree, Jonathan; Creasy, Heather H; D'Arcy, Mike; Felix, Victor; Giglio, Michelle; Gingrich, Alicia; Harris, Rayna M; Hodges, Theresa K; Ifeonu, Olukemi; Jeon, Minji; Kropiwnicki, Eryk; Lim, Marisa C W; Liming, R Lee; Lumian, Jessica; Mahurkar, Anup A; Mandal, Meisha; Munro, James B; Nadendla, Suvarna; Richter, Rudyard; Romano, Cia; Rocca-Serra, Philippe; Schor, Michael; Schuler, Robert E; Tangmunarunkit, Hongsuda; Waldrop, Alex; Williams, Cris; Word, Karen; Sansone, Susanna-Assunta; Ma'ayan, Avi; Wagner, Rick; Foster, Ian; Kesselman, Carl; Brown, C Titus; White, Owen |
GigaScience |
36409836 |
2022 Nov 21 |
| Trends in psychiatric diagnoses by COVID-19 infection and hospitalization among patients with and without recent clinical psychiatric diagnoses in New York city from March 2020 to August 2021. |
Xiao, Yunyu; Sharma, Mohit M; Thiruvalluru, Rohith K; Gimbrone, Catherine; Weissman, Myrna M; Olfson, Mark; Keyes, Katherine M; Pathak, Jyotishman |
Translational psychiatry |
36414624 |
2022 Nov 21 |
| Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains. |
Gazula, Harshvardhan; Rootes-Murdy, Kelly; Holla, Bharath; Basodi, Sunitha; Zhang, Zuo; Verner, Eric; Kelly, Ross; Murthy, Pratima; Chakrabarti, Amit; Basu, Debasish; Bhagyalakshmi Nanjayya, Subodh; Lenin Singh, Rajkumar; Lourembam Singh, Roshan; Kalyanram, Kartik; Kartik, Kamakshi; Kalyanaraman, Kumaran; Ghattu, Krishnaveni; Kuriyan, Rebecca; Kurpad, Sunita Simon; Barker, Gareth J; Bharath, Rose Dawn; Desrivieres, Sylvane; Purushottam, Meera; Orfanos, Dimitri Papadopoulos; Sharma, Eesha; Hickman, Matthew; Toledano, Mireille; Vaidya, Nilakshi; Banaschewski, Tobias; Bokde, Arun L W; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillére Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Paus, Tomás; Poustka, Luise; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; IMAGEN Consortium; Turner, Jessica A; Sarwate, Anand D; Plis, Sergey M; Benegal, Vivek; Schumann, Gunter; Calhoun, Vince D |
Neuroinformatics |
36434478 |
2022 Nov 25 |
| Modeling the impact of data sharing on variant classification. |
Casaletto, James; Cline, Melissa; Shirts, Brian |
Journal of the American Medical Informatics Association : JAMIA |
36451272 |
2023 Feb 16 |
| Cellular and molecular effects of PNCK, a non-canonical kinase target in renal cell carcinoma. |
Essegian, Derek J; Chavez, Valery; Bustamante, Floritza; Schürer, Stephan C; Merchan, Jaime R |
iScience |
36465101 |
2022 Dec 22 |
| Anxiety onset in adolescents: a machine-learning prediction. |
Chavanne, Alice V; Paillère Martinot, Marie Laure; Penttilä, Jani; Grimmer, Yvonne; Conrod, Patricia; Stringaris, Argyris; van Noort, Betteke; Isensee, Corinna; Becker, Andreas; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; Artiges, Eric; IMAGEN consortium |
Molecular psychiatry |
36481929 |
2023 Feb |
| Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium. |
Constantinides, Constantinos; Han, Laura K M; Alloza, Clara; Antonucci, Linda Antonella; Arango, Celso; Ayesa-Arriola, Rosa; Banaj, Nerisa; Bertolino, Alessandro; Borgwardt, Stefan; Bruggemann, Jason; Bustillo, Juan; Bykhovski, Oleg; Calhoun, Vince; Carr, Vaughan; Catts, Stanley; Chung, Young-Chul; Crespo-Facorro, Benedicto; Díaz-Caneja, Covadonga M; Donohoe, Gary; Plessis, Stefan Du; Edmond, Jesse; Ehrlich, Stefan; Emsley, Robin; Eyler, Lisa T; Fuentes-Claramonte, Paola; Georgiadis, Foivos; Green, Melissa; Guerrero-Pedraza, Amalia; Ha, Minji; Hahn, Tim; Henskens, Frans A; Holleran, Laurena; Homan, Stephanie; Homan, Philipp; Jahanshad, Neda; Janssen, Joost; Ji, Ellen; Kaiser, Stefan; Kaleda, Vasily; Kim, Minah; Kim, Woo-Sung; Kirschner, Matthias; Kochunov, Peter; Kwak, Yoo Bin; Kwon, Jun Soo; Lebedeva, Irina; Liu, Jingyu; Mitchie, Patricia; Michielse, Stijn; Mothersill, David; Mowry, Bryan; de la Foz, Víctor Ortiz-García; Pantelis, Christos; Pergola, Giulio; Piras, Fabrizio; Pomarol-Clotet, Edith; Preda, Adrian; Quidé, Yann; Rasser, Paul E; Rootes-Murdy, Kelly; Salvador, Raymond; Sangiuliano, Marina; Sarró, Salvador; Schall, Ulrich; Schmidt, André; Scott, Rodney J; Selvaggi, Pierluigi; Sim, Kang; Skoch, Antonin; Spalletta, Gianfranco; Spaniel, Filip; Thomopoulos, Sophia I; Tomecek, David; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; van Amelsvoort, Therese; Vázquez-Bourgon, Javier; Vecchio, Daniela; Voineskos, Aristotle; Weickert, Cynthia S; Weickert, Thomas; Thompson, Paul M; Schmaal, Lianne; van Erp, Theo G M; Turner, Jessica; Cole, James H; ENIGMA Schizophrenia Consortium; Dima, Danai; Walton, Esther |
Molecular psychiatry |
36494461 |
2022 Dec 09 |
| In vivo white matter microstructure in adolescents with early-onset psychosis: a multi-site mega-analysis. |
Barth, Claudia; Kelly, Sinead; Nerland, Stener; Jahanshad, Neda; Alloza, Clara; Ambrogi, Sonia; Andreassen, Ole A; Andreou, Dimitrios; Arango, Celso; Baeza, Inmaculada; Banaj, Nerisa; Bearden, Carrie E; Berk, Michael; Bohman, Hannes; Castro-Fornieles, Josefina; Chye, Yann; Crespo-Facorro, Benedicto; de la Serna, Elena; Díaz-Caneja, Covadonga M; Gurholt, Tiril P; Hegarty, Catherine E; James, Anthony; Janssen, Joost; Johannessen, Cecilie; Jönsson, Erik G; Karlsgodt, Katherine H; Kochunov, Peter; Lois, Noemi G; Lundberg, Mathias; Myhre, Anne M; Pascual-Diaz, Saül; Piras, Fabrizio; Smelror, Runar E; Spalletta, Gianfranco; Stokkan, Therese S; Sugranyes, Gisela; Suo, Chao; Thomopoulos, Sophia I; Tordesillas-Gutiérrez, Diana; Vecchio, Daniela; Wedervang-Resell, Kirsten; Wortinger, Laura A; Thompson, Paul M; Agartz, Ingrid |
Molecular psychiatry |
36510004 |
2022 Dec 12 |
| STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci. |
Dashnow, Harriet; Pedersen, Brent S; Hiatt, Laurel; Brown, Joe; Beecroft, Sarah J; Ravenscroft, Gianina; LaCroix, Amy J; Lamont, Phillipa; Roxburgh, Richard H; Rodrigues, Miriam J; Davis, Mark; Mefford, Heather C; Laing, Nigel G; Quinlan, Aaron R |
Genome biology |
36517892 |
2022 Dec 14 |
| Right Prefrontal Cortical Thickness Is Associated With Response to Cognitive-Behavioral Therapy in Children With Obsessive-Compulsive Disorder. |
Bertolín, Sara; Alonso, Pino; Martínez-Zalacaín, Ignacio; Menchón, Jose M; Jimenez-Murcia, Susana; Baker, Justin T; Bargalló, Nuria; Batistuzzo, Marcelo Camargo; Boedhoe, Premika S W; Brennan, Brian P; Feusner, Jamie D; Fitzgerald, Kate D; Fontaine, Martine; Hansen, Bjarne; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Huyser, Chaim; Jahanshad, Neda; Jaspers-Fayer, Fern; Kuno, Masaru; Kvale, Gerd; Lazaro, Luisa; Machado-Sousa, Mafalda; Marsh, Rachel; Morgado, Pedro; Nakagawa, Akiko; Norman, Luke; Nurmi, Erika L; O'Neill, Joseph; Ortiz, Ana E; Perriello, Chris; Piacentini, John; Picó-Pérez, Maria; Shavitt, Roseli G; Shimizu, Eiji; Simpson, Helen Blair; Stewart, S Evelyn; Thomopoulos, Sophia I; Thorsen, Anders Lillevik; Walitza, Susanne; Wolters, Lidewij H; ENIGMA-OCD Working Group; Thompson, Paul M; van den Heuvel, Odile A; Stein, Dan J; Soriano-Mas, Carles |
Journal of the American Academy of Child and Adolescent Psychiatry |
36526161 |
2023 Apr |
| Vigilance associates with the low-dimensional structure of fMRI data. |
Zhang, Shengchao; Goodale, Sarah E; Gold, Benjamin P; Morgan, Victoria L; Englot, Dario J; Chang, Catie |
NeuroImage |
36535323 |
2023 Feb 15 |
| An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. |
Chen, Xueer; Chen, Lujia; Kürten, Cornelius H L; Jabbari, Fattaneh; Vujanovic, Lazar; Ding, Ying; Lu, Binfeng; Lu, Kevin; Kulkarni, Aditi; Tabib, Tracy; Lafyatis, Robert; Cooper, Gregory F; Ferris, Robert; Lu, Xinghua |
PLoS computational biology |
36548438 |
2022 Dec |
| Altered lateralization of the cingulum in deployment-related traumatic brain injury: An ENIGMA military-relevant brain injury study. |
Dennis, Emily L; Newsome, Mary R; Lindsey, Hannah M; Adamson, Maheen; Austin, Tara A; Disner, Seth G; Eapen, Blessen C; Esopenko, Carrie; Franz, Carol E; Geuze, Elbert; Haswell, Courtney; Hinds 2nd, Sidney R; Hodges, Cooper B; Irimia, Andrei; Kenney, Kimbra; Koerte, Inga K; Kremen, William S; Levin, Harvey S; Morey, Rajendra A; Ollinger, John; Rowland, Jared A; Scheibel, Randall S; Shenton, Martha E; Sullivan, Danielle R; Talbert, Leah D; Thomopoulos, Sophia I; Troyanskaya, Maya; Walker, William C; Wang, Xin; Ware, Ashley L; Werner, John Kent; Williams, Wright; Thompson, Paul M; Tate, David F; Wilde, Elisabeth A |
Human brain mapping |
36583562 |
2023 Apr 01 |
| Social environment and brain structure in adolescent mental health: A cross-sectional structural equation modelling study using IMAGEN data. |
Stepanous, Jessica; Munford, Luke; Qualter, Pamela; Banaschewski, Tobias; Nees, Frauke; Elliott, Rebecca; IMAGEN Consortium |
PloS one |
36603003 |
2023 |
| Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. |
Deutsch, Eric W; Vizcaíno, Juan Antonio; Jones, Andrew R; Binz, Pierre-Alain; Lam, Henry; Klein, Joshua; Bittremieux, Wout; Perez-Riverol, Yasset; Tabb, David L; Walzer, Mathias; Ricard-Blum, Sylvie; Hermjakob, Henning; Neumann, Steffen; Mak, Tytus D; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Bandeira, Nuno; Carver, Jeremy; Pullman, Benjamin; Sun, Zhi; Hoffmann, Nils; Shofstahl, Jim; Zhu, Yunping; Licata, Luana; Quaglia, Federica; Tosatto, Silvio C E; Orchard, Sandra E |
Journal of proteome research |
36626722 |
2023 Feb 03 |
| MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size. |
Lafferty, Michael J; Aygün, Nil; Patel, Niyanta K; Krupa, Oleh; Liang, Dan; Wolter, Justin M; Geschwind, Daniel H; de la Torre-Ubieta, Luis; Stein, Jason L |
eLife |
36629315 |
2023 Jan 11 |
| Microstructural mapping of dentate gyrus pathology in Alzheimer's disease: A 16.4 Tesla MRI study. |
Shih, Nien-Chu; Kurniawan, Nyoman D; Cabeen, Ryan P; Korobkova, Laura; Wong, Ellen; Chui, Helena C; Clark, Kristi A; Miller, Carol A; Hawes, Debra; Jones, Kymry T; Sepehrband, Farshid |
NeuroImage. Clinical |
36630864 |
2023 |
| Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite. |
Deutsch, Eric W; Mendoza, Luis; Shteynberg, David D; Hoopmann, Michael R; Sun, Zhi; Eng, Jimmy K; Moritz, Robert L |
Journal of proteome research |
36648445 |
2023 Feb 03 |
| ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. |
Rehfeldt, Tobias G; Gabriels, Ralf; Bouwmeester, Robbin; Gessulat, Siegfried; Neely, Benjamin A; Palmblad, Magnus; Perez-Riverol, Yasset; Schmidt, Tobias; Vizcaíno, Juan Antonio; Deutsch, Eric W |
Journal of proteome research |
36693629 |
2023 Feb 03 |
| Normative modeling of brain morphometry in Clinical High-Risk for Psychosis. |
Haas, Shalaila S; Ge, Ruiyang; Agartz, Ingrid; Amminger, G Paul; Andreassen, Ole A; Bachman, Peter; Baeza, Inmaculada; Choi, Sunah; Colibazzi, Tiziano; Cropley, Vanessa L; de la Fuente-Sandoval, Camilo; Ebdrup, Bjørn H; Fortea, Adriana; Fusar-Poli, Paolo; Glenthøj, Birte Yding; Glenthøj, Louise Birkedal; Haut, Kristen M; Hayes, Rebecca A; Heekeren, Karsten; Hooker, Christine I; Hwang, Wu Jeong; Jahanshad, Neda; Kaess, Michael; Kasai, Kiyoto; Katagiri, Naoyuki; Kim, Minah; Kindler, Jochen; Koike, Shinsuke; Kristensen, Tina D; Kwon, Jun Soo; Lawrie, Stephen M; Lee, Jimmy; Lemmers-Jansen, Imke Lj; Lin, Ashleigh; Ma, Xiaoqian; Mathalon, Daniel H; McGuire, Philip; Michel, Chantal; Mizrahi, Romina; Mizuno, Masafumi; Møller, Paul; Mora-Durán, Ricardo; Nelson, Barnaby; Nemoto, Takahiro; Nordentoft, Merete; Nordholm, Dorte; Omelchenko, Maria A; Pantelis, Christos; Pariente, Jose C; Raghava, Jayachandra M; Reyes-Madrigal, Francisco; Røssberg, Jan I; Rössler, Wulf; Salisbury, Dean F; Sasabayashi, Daiki; Schall, Ulrich; Smigielski, Lukasz; Sugranyes, Gisela; Suzuki, Michio; Takahashi, Tsutomu; Tamnes, Christian K; Theodoridou, Anastasia; Thomopoulos, Sophia I; Thompson, Paul M; Tomyshev, Alexander S; Uhlhaas, Peter J; Værnes, Tor G; van Amelsvoort, Therese Amj; van Erp, Theo Gm; Waltz, James A; Wenneberg, Christina; Westlye, Lars T; Wood, Stephen J; Zhou, Juan H; Hernaus, Dennis; Jalbrzikowski, Maria; Kahn, René S; Corcoran, Cheryl M; Frangou, Sophia; ENIGMA Clinical High Risk for Psychosis Working Group |
bioRxiv : the preprint server for biology |
36711551 |
2023 Jan 18 |
| Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation. |
Kolmogorov, Mikhail; Billingsley, Kimberley J; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Jerez, Pilar Alvarez; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; North American Brain Expression Consortium (NABEC); Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W; Traynor, Bryan J; Miga, Karen H; Jain, Miten; Timp, Winston; Phillippy, Adam M; Chaisson, Mark; Sedlazeck, Fritz J; Blauwendraat, Cornelis; Paten, Benedict |
bioRxiv : the preprint server for biology |
36711673 |
2023 Apr 05 |
| Bridging Big Data: Procedures for Combining Non-equivalent Cognitive Measures from the ENIGMA Consortium. |
Kennedy, Eamonn; Vadlamani, Shashank; Lindsey, Hannah M; Lei, Pui-Wa; Pugh, Mary Jo; Adamson, Maheen; Alda, Martin; Alonso-Lana, Silvia; Ambrogi, Sonia; Anderson, Tim J; Arango, Celso; Asarnow, Robert; Avram, Mihai; Ayesa-Arriola, Rosa; Babikian, Talin; Banaj, Nerisa; Bird, Laura J; Borgwardt, Stefan; Brodtmann, Amy; Brosch, Katharina; Caeyenberghs, Karen; Calhoun, Vince D; Chiaravalloti, Nancy D; Cifu, David X; Crespo-Facorro, Benedicto; Dalrymple-Alford, John C; Dams-O'Connor, Kristen; Dannlowski, Udo; Darby, David; Davenport, Nicholas; DeLuca, John; Diaz-Caneja, Covadonga M; Disner, Seth G; Dobryakova, Ekaterina; Ehrlich, Stefan; Esopenko, Carrie; Ferrarelli, Fabio; Frank, Lea E; Franz, Carol; Fuentes-Claramonte, Paola; Genova, Helen; Giza, Christopher C; Goltermann, Janik; Grotegerd, Dominik; Gruber, Marius; Gutierrez-Zotes, Alfonso; Ha, Minji; Haavik, Jan; Hinkin, Charles; Hoskinson, Kristen R; Hubl, Daniela; Irimia, Andrei; Jansen, Andreas; Kaess, Michael; Kang, Xiaojian; Kenney, Kimbra; Kerkova, Barbora; Khlif, Mohamed Salah; Kim, Minah; Kindler, Jochen; Kircher, Tilo; Knizkova, Karolina; Kolskar, Knut K; Krch, Denise; Kremen, William S; Kuhn, Taylor; Kumari, Veena; Kwon, Jun Soo; Langella, Roberto; Laskowitz, Sarah; Lee, Jungha; Lengenfelder, Jean; Liebel, Spencer W; Liou-Johnson, Victoria; Lippa, Sara M; Lovstad, Marianne; Lundervold, Astri J; Marotta, Cassandra; Marquardt, Craig A; Mattos, Paulo; Mayeli, Ahmad; McDonald, Carrie R; Meinert, Susanne; Melzer, Tracy R; Merchan-Naranjo, Jessica; Michel, Chantal; Morey, Rajendra A; Mwangi, Benson; Myall, Daniel J; Nenadi, Igor; Newsome, Mary R; Nunes, Abraham; O'Brien, Terence; Oertel, Viola; Ollinger, John; Olsen, Alexander; Ortiz Garcia de la Foz, Victor; Ozmen, Mustafa; Pardoe, Heath; Parent, Marise; Piras, Fabrizio; Piras, Federica; Pomarol-Clotet, Edith; Repple, Jonathan; Richard, Genevieve; Rodriguez, Jonathan; Rodriguez, Mabel; Rootes-Murdy, Kelly; Rowland, Jared; Ryan, Nicholas P; Salvador, Raymond; Sanders, Anne-Marthe; Schmidt, Andre; Soares, Jair C; Spalletta, Gianfranco; Paniel, Filip; Stasenko, Alena; Stein, Frederike; Straube, Benjamin; Thames, April; Thomas-Odenthal, Florian; Thomopoulos, Sophia I; Tone, Erin; Torres, Ivan; Troyanskaya, Maya; Turner, Jessica A; Ulrichsen, Kristine M; Umpierrez, Guillermo; Vilella, Elisabet; Vivash, Lucy; Walker, William C; Werden, Emilio; Westlye, Lars T; Wild, Krista; Wroblewski, Adrian; Wu, Mon-Ju; Wylie, Glenn R; Yatham, Lakshmi N; Zunta-Soares, Giovana B; Thompson, Paul M; Tate, David F; Hillary, Frank G; Dennis, Emily L; Wilde, Elisabeth A |
bioRxiv : the preprint server for biology |
36712107 |
2023 Apr 07 |
| Association of Rare Protein-Truncating DNA Variants in APOB or PCSK9 With Low-density Lipoprotein Cholesterol Level and Risk of Coronary Heart Disease. |
Dron, Jacqueline S; Patel, Aniruddh P; Zhang, Yiyi; Jurgens, Sean J; Maamari, Dimitri J; Wang, Minxian; Boerwinkle, Eric; Morrison, Alanna C; de Vries, Paul S; Fornage, Myriam; Hou, Lifang; Lloyd-Jones, Donald M; Psaty, Bruce M; Tracy, Russell P; Bis, Joshua C; Vasan, Ramachandran S; Levy, Daniel; Heard-Costa, Nancy; Rich, Stephen S; Guo, Xiuqing; Taylor, Kent D; Gibbs, Richard A; Rotter, Jerome I; Willer, Cristen J; Oelsner, Elizabeth C; Moran, Andrew E; Peloso, Gina M; Natarajan, Pradeep; Khera, Amit V |
JAMA cardiology |
36723951 |
2023 Mar 01 |
| Optimal gap-affine alignment in O(s) space. |
Marco-Sola, Santiago; Eizenga, Jordan M; Guarracino, Andrea; Paten, Benedict; Garrison, Erik; Moreto, Miquel |
Bioinformatics (Oxford, England) |
36749013 |
2023 Feb 03 |
| Genomic patterns linked to gray matter alterations underlying working memory deficits in adults and adolescents with attention-deficit/hyperactivity disorder. |
Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Jiang, Wenhao; Rootes-Murdy, Kelly; Schoenmacker, Gido; Silva, Rogers F; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Hartman, Catharina A; Sprooten, Emma; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu |
Translational psychiatry |
36774336 |
2023 Feb 11 |
| Longitudinal Associations between Peer and Family Relationships, Emotional Symptoms, and Regional Brain Volume across Adolescence. |
Stepanous, Jessica; Munford, Luke; Qualter, Pamela; Nees, Frauke; Elliott, Rebecca; IMAGEN Consortium |
Journal of youth and adolescence |
36807228 |
2023 Apr |
| Conduct problems are associated with accelerated thinning of emotion-related cortical regions in a community-based sample of adolescents. |
Albaugh, Matthew D; Hudziak, James J; Spechler, Philip A; Chaarani, Bader; Lepage, Claude; Jeon, Seun; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium |
Psychiatry research. Neuroimaging |
36812809 |
2023 Apr |
| Rare CNVs and phenome-wide profiling highlight brain structural divergence and phenotypical convergence. |
Kopal, Jakub; Kumar, Kuldeep; Saltoun, Karin; Modenato, Claudia; Moreau, Clara A; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Martin, Charles-Olivier; Saci, Zohra; Younis, Nadine; Tamer, Petra; Douard, Elise; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurèlie; Richetin, Sonia; Kushan, Leila; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Draganski, Bogdan; Sønderby, Ida E; Andreassen, Ole A; Glahn, David C; Thompson, Paul M; Bearden, Carrie E; Jacquemont, Sébastien; Bzdok, Danilo |
Nature human behaviour |
36864136 |
2023 Jun |
| Phased nanopore assembly with Shasta and modular graph phasing with GFAse. |
Lorig-Roach, Ryan; Meredith, Melissa; Monlong, Jean; Jain, Miten; Olsen, Hugh; McNulty, Brandy; Porubsky, David; Montague, Tessa; Lucas, Julian; Condon, Chris; Eizenga, Jordan; Juul, Sissel; McKenzie, Sean; Simmonds, Sara E; Park, Jimin; Asri, Mobin; Koren, Sergey; Eichler, Evan; Axel, Richard; Martin, Bruce; Carnevali, Paolo; Miga, Karen; Paten, Benedict |
bioRxiv : the preprint server for biology |
36865218 |
2023 Feb 22 |
| Subcortical brain alterations in carriers of genomic copy number variants. |
Kumar, Kuldeep; Modenato, Claudia; Moreau, Clara; Ching, Christopher R K; Harvey, Annabelle; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Douard, Elise; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurélie; Richetin, Sonia; 16p11.2 European Consortium, Simons Searchlight Consortium; Kushan, Leila; Isaev, Dmitry; Alpert, Kathryn; Ragothaman, Anjani; Turner, Jessica A; Wang, Lei; Ho, Tiffany C; Schmaal, Lianne; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Dumas, Guillaume; Draganski, Bogdan; Gutman, Boris A; Sønderby, Ida E; Andreassen, Ole A; Schultz, Laura; Almasy, Laura; Glahn, David C; Bearden, Carrie E; Thompson, Paul M; Jacquemont, Sébastien |
medRxiv : the preprint server for health sciences |
36865328 |
2023 Feb 22 |
| Genetic Modifiers of Cystic Fibrosis Lung Disease Severity: Whole-Genome Analysis of 7,840 Patients. |
Zhou, Yi-Hui; Gallins, Paul J; Pace, Rhonda G; Dang, Hong; Aksit, Melis A; Blue, Elizabeth E; Buckingham, Kati J; Collaco, Joseph M; Faino, Anna V; Gordon, William W; Hetrick, Kurt N; Ling, Hua; Liu, Weifang; Onchiri, Frankline M; Pagel, Kymberleigh; Pugh, Elizabeth W; Raraigh, Karen S; Rosenfeld, Margaret; Sun, Quan; Wen, Jia; Li, Yun; Corvol, Harriet; Strug, Lisa J; Bamshad, Michael J; Blackman, Scott M; Cutting, Garry R; Gibson, Ronald L; O'Neal, Wanda K; Wright, Fred A; Knowles, Michael R |
American journal of respiratory and critical care medicine |
36921087 |
2023 May 15 |
| Direct estimation of regional lung volume change from paired and single CT images using residual regression neural network. |
Gerard, Sarah E; Chaudhary, Muhammad F A; Herrmann, Jacob; Christensen, Gary E; San José Estépar, Raúl; Reinhardt, Joseph M; Hoffman, Eric A |
Medical physics |
36929883 |
2023 Mar 17 |
| A biologically informed polygenic score of neuronal plasticity moderates the association between cognitive aptitudes and cortical thickness in adolescents. |
Navarri, Xavier; Vosberg, Daniel E; Shin, Jean; Richer, Louis; Leonard, Gabriel; Pike, G Bruce; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Pausova, Zdenka; Paus, Tomáš |
Developmental cognitive neuroscience |
36963244 |
2023 Apr |
| Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena. |
Nanda, Aditya; Johnson, Graham W; Mu, Yu; Ahrens, Misha B; Chang, Catie; Englot, Dario J; Breakspear, Michael; Rubinov, Mikail |
Cell reports |
36966391 |
2023 Apr 25 |
| Trajectories of cortical structures associated with stress across adolescence: a bivariate latent change score approach. |
Nweze, Tochukwu; Banaschewski, Tobias; Ajaelu, Cyracius; Okoye, Chukwuemeka; Ezenwa, Michael; Whelan, Robert; Papadopoulos Orfanos, Dimitri; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Hanson, Jamie L; IMAGEN Consortium |
Journal of child psychology and psychiatry, and allied disciplines |
36990655 |
2023 Aug |
| Different effects of cardiometabolic syndrome on brain age in relation to gender and ethnicity. |
Kang, Sung Hoon; Liu, Mengting; Park, Gilsoon; Kim, Sharon Y; Lee, Hyejoo; Matloff, William; Zhao, Lu; Yoo, Heejin; Kim, Jun Pyo; Jang, Hyemin; Kim, Hee Jin; Jahanshad, Neda; Oh, Kyumgmi; Koh, Seong-Beom; Na, Duk L; Gallacher, John; Gottesman, Rebecca F; Seo, Sang Won; Kim, Hosung |
Alzheimer's research & therapy |
36998058 |
2023 Mar 30 |
| Evaluating semi-supervision methods for medical image segmentation: applications in cardiac magnetic resonance imaging. |
Hooper, Sarah M; Wu, Sen; Davies, Rhodri H; Bhuva, Anish; Schelbert, Erik B; Moon, James C; Kellman, Peter; Xue, Hui; Langlotz, Curtis; Ré, Christopher |
Journal of medical imaging (Bellingham, Wash.) |
37009059 |
2023 Mar |
| Efficient and Precise Secure Generalized Edit Distance and Beyond. |
Zhu, Ruiyu; Huang, Yan |
IEEE transactions on dependable and secure computing |
37020740 |
2022 |
| Using the Reactome Database. |
Rothfels, Karen; Milacic, Marija; Matthews, Lisa; Haw, Robin; Sevilla, Cristoffer; Gillespie, Marc; Stephan, Ralf; Gong, Chuqiao; Ragueneau, Eliot; May, Bruce; Shamovsky, Veronica; Wright, Adam; Weiser, Joel; Beavers, Deidre; Conley, Patrick; Tiwari, Krishna; Jassal, Bijay; Griss, Johannes; Senff-Ribeiro, Andrea; Brunson, Timothy; Petryszak, Robert; Hermjakob, Henning; D'Eustachio, Peter; Wu, Guanming; Stein, Lincoln |
Current protocols |
37053306 |
2023 Apr |
| Deep learning on graphs for multi-omics classification of COPD. |
Zhuang, Yonghua; Xing, Fuyong; Ghosh, Debashis; Hobbs, Brian D; Hersh, Craig P; Banaei-Kashani, Farnoush; Bowler, Russell P; Kechris, Katerina |
PloS one |
37083575 |
2023 |
| A shared neural basis underlying psychiatric comorbidity. |
Xie, Chao; Xiang, Shitong; Shen, Chun; Peng, Xuerui; Kang, Jujiao; Li, Yuzhu; Cheng, Wei; He, Shiqi; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Sahakian, Barbara J; Robbins, Trevor W; Schumann, Gunter; Jia, Tianye; Feng, Jianfeng; IMAGEN Consortium; STRATIFY Consortium; ZIB Consortium |
Nature medicine |
37095248 |
2023 May |
| A new method for estimating the probability of causal relationships from observational data: Application to the study of the short-term effects of air pollution on cardiovascular and respiratory disease. |
Andrews, Bryan; Wongchokprasitti, Chirayu; Visweswaran, Shyam; Lakhani, Chirag M; Patel, Chirag J; Cooper, Gregory F |
Artificial intelligence in medicine |
37100513 |
2023 May |
| Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. |
Taubes, Alice; Nova, Phil; Zalocusky, Kelly A; Kosti, Idit; Bicak, Mesude; Zilberter, Misha Y; Hao, Yanxia; Yoon, Seo Yeon; Oskotsky, Tomiko; Pineda, Silvia; Chen, Bin; Aery Jones, Emily A; Choudhary, Krishna; Grone, Brian; Balestra, Maureen E; Chaudhry, Fayzan; Paranjpe, Ishan; De Freitas, Jessica; Koutsodendris, Nicole; Chen, Nuo; Wang, Celine; Chang, William; An, Alice; Glicksberg, Benjamin S; Sirota, Marina; Huang, Yadong |
Nature aging |
37117528 |
2021 Dec |
| The functional connectome in obsessive-compulsive disorder: resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium. |
Bruin, Willem B; Abe, Yoshinari; Alonso, Pino; Anticevic, Alan; Backhausen, Lea L; Balachander, Srinivas; Bargallo, Nuria; Batistuzzo, Marcelo C; Benedetti, Francesco; Bertolin Triquell, Sara; Brem, Silvia; Calesella, Federico; Couto, Beatriz; Denys, Damiaan A J P; Echevarria, Marco A N; Eng, Goi Khia; Ferreira, Sónia; Feusner, Jamie D; Grazioplene, Rachael G; Gruner, Patricia; Guo, Joyce Y; Hagen, Kristen; Hansen, Bjarne; Hirano, Yoshiyuki; Hoexter, Marcelo Q; Jahanshad, Neda; Jaspers-Fayer, Fern; Kasprzak, Selina; Kim, Minah; Koch, Kathrin; Bin Kwak, Yoo; Kwon, Jun Soo; Lazaro, Luisa; Li, Chiang-Shan R; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Menchon, Jose M; Moreira, Pedro S; Morgado, Pedro; Nakagawa, Akiko; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Nurmi, Erika L; Zorrilla, Jose C Pariente; Piacentini, John; Picó-Pérez, Maria; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Janardhan Y C; Rodriguez-Manrique, Daniela; Sakai, Yuki; Shimizu, Eiji; Shivakumar, Venkataram; Simpson, Blair H; Soriano-Mas, Carles; Sousa, Nuno; Spalletta, Gianfranco; Stern, Emily R; Evelyn Stewart, S; Szeszko, Philip R; Tang, Jinsong; Thomopoulos, Sophia I; Thorsen, Anders L; Yoshida, Tokiko; Tomiyama, Hirofumi; Vai, Benedetta; Veer, Ilya M; Venkatasubramanian, Ganesan; Vetter, Nora C; Vriend, Chris; Walitza, Susanne; Waller, Lea; Wang, Zhen; Watanabe, Anri; Wolff, Nicole; Yun, Je-Yeon; Zhao, Qing; van Leeuwen, Wieke A; van Marle, Hein J F; van de Mortel, Laurens A; van der Straten, Anouk; van der Werf, Ysbrand D; ENIGMA-OCD Working Group; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A; van Wingen, Guido A |
Molecular psychiatry |
37131072 |
2023 Oct |
| Clinical significance and biology of circulating tumor DNA in high-risk early-stage HER2-negative breast cancer receiving neoadjuvant chemotherapy. |
Magbanua, Mark Jesus M; Brown Swigart, Lamorna; Ahmed, Ziad; Sayaman, Rosalyn W; Renner, Derrick; Kalashnikova, Ekaterina; Hirst, Gillian L; Yau, Christina; Wolf, Denise M; Li, Wen; Delson, Amy L; Asare, Smita; Liu, Minetta C; Albain, Kathy; Chien, A Jo; Forero-Torres, Andres; Isaacs, Claudine; Nanda, Rita; Tripathy, Debu; Rodriguez, Angel; Sethi, Himanshu; Aleshin, Alexey; Rabinowitz, Matthew; Perlmutter, Jane; Symmans, W Fraser; Yee, Douglas; Hylton, Nola M; Esserman, Laura J; DeMichele, Angela M; Rugo, Hope S; van 't Veer, Laura J |
Cancer cell |
37146605 |
2023 Jun 12 |
| Drinking motives, personality traits and life stressors-identifying pathways to harmful alcohol use in adolescence using a panel network approach. |
Freichel, René; Pfirrmann, Janine; Cousjin, Janna; de Jong, Peter; Franken, Ingmar; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Whelan, Robert; Schumann, Gunter; Walter, Henrik; Veer, Ilya M; Wiers, Reinout W; IMAGEN Consortium |
Addiction (Abingdon, England) |
37157052 |
2023 May 08 |
| Pangenome graph construction from genome alignments with Minigraph-Cactus. |
Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M; Eizenga, Jordan M; Gao, Yan; Human Pangenome Reference Consortium; Marschall, Tobias; Li, Heng; Paten, Benedict |
Nature biotechnology |
37165083 |
2023 May 10 |
| A systematic review of neuroimaging epigenetic research: calling for an increased focus on development. |
Walton, Esther; Baltramonaityte, Vilte; Calhoun, Vince; Heijmans, Bastiaan T; Thompson, Paul M; Cecil, Charlotte A M |
Molecular psychiatry |
37185958 |
2023 Jul |
| Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research. |
Ahalt, Stan; Avillach, Paul; Boyles, Rebecca; Bradford, Kira; Cox, Steven; Davis-Dusenbery, Brandi; Grossman, Robert L; Krishnamurthy, Ashok; Manning, Alisa; Paten, Benedict; Philippakis, Anthony; Borecki, Ingrid; Chen, Shu Hui; Kaltman, Jon; Ladwa, Sweta; Schwartz, Chip; Thomson, Alastair; Davis, Sarah; Leaf, Alison; Lyons, Jessica; Sheets, Elizabeth; Bis, Joshua C; Conomos, Matthew; Culotti, Alessandro; Desain, Thomas; Digiovanna, Jack; Domazet, Milan; Gogarten, Stephanie; Gutierrez-Sacristan, Alba; Harris, Tim; Heavner, Ben; Jain, Deepti; O'Connor, Brian; Osborn, Kevin; Pillion, Danielle; Pleiness, Jacob; Rice, Ken; Rupp, Garrett; Serret-Larmande, Arnaud; Smith, Albert; Stedman, Jason P; Stilp, Adrienne; Barsanti, Teresa; Cheadle, John; Erdmann, Christopher; Farlow, Brandy; Gartland-Gray, Allie; Hayes, Julie; Hiles, Hannah; Kerr, Paul; Lenhardt, Chris; Madden, Tom; Mieczkowska, Joanna O; Miller, Amanda; Patton, Patrick; Rathbun, Marcie; Suber, Stephanie; Asare, Joe |
Journal of the American Medical Informatics Association : JAMIA |
37192819 |
2023 May 16 |
| Human cortex development is shaped by molecular and cellular brain systems. |
Lotter, Leon D; Saberi, Amin; Hansen, Justine Y; Misic, Bratislav; Paquola, Casey; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère, Marie-Laure; Artiges, Eric; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium; Nees, Frauke; Banaschewski, Tobias; Eickhoff, Simon B; Dukart, Juergen |
bioRxiv : the preprint server for biology |
37205539 |
2023 Oct 04 |
| AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK. |
Essegian, Derek J; Chavez, Valery; Khurshid, Rabia; Merchan, Jaime R; Schürer, Stephan C |
PLoS computational biology |
37235579 |
2023 May |
| Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit. |
Yang, Runzhe; Vishwanathan, Ashwin; Wu, Jingpeng; Kemnitz, Nico; Ih, Dodam; Turner, Nicholas; Lee, Kisuk; Tartavull, Ignacio; Silversmith, William M; Jordan, Chris S; David, Celia; Bland, Doug; Sterling, Amy; Goldman, Mark S; Aksay, Emre R F; Seung, H Sebastian; Eyewirers |
Current biology : CB |
37236180 |
2023 Jun 05 |
| Federated Analysis for Privacy-Preserving Data Sharing: A Technical and Legal Primer. |
Casaletto, James; Bernier, Alexander; McDougall, Robyn; Cline, Melissa S |
Annual review of genomics and human genetics |
37253596 |
2023 Aug 25 |
| Inferring cell-type-specific causal gene regulatory networks during human neurogenesis. |
Aygün, Nil; Liang, Dan; Crouse, Wesley L; Keele, Gregory R; Love, Michael I; Stein, Jason L |
Genome biology |
37254169 |
2023 May 30 |
| How Notifications Affect Engagement With a Behavior Change App: Results From a Micro-Randomized Trial. |
Bell, Lauren; Garnett, Claire; Bao, Yihan; Cheng, Zhaoxi; Qian, Tianchen; Perski, Olga; Potts, Henry W W; Williamson, Elizabeth |
JMIR mHealth and uHealth |
37294612 |
2023 Jun 09 |
| Independent contribution of polygenic risk for schizophrenia and cannabis use in predicting psychotic-like experiences in young adulthood: testing gene × environment moderation and mediation. |
Elkrief, Laurent; Lin, Bochao; Marchi, Mattia; Afzali, Mohammad H; Banaschewski, Tobias; Bokde, Arun L W; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Luykx, Jurjen; Boks, Marco P; Conrod, Patricia J; IMAGEN consortium |
Psychological medicine |
37310336 |
2023 Apr |
| Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. |
Girard, Gabriel; Rafael-Patiño, Jonathan; Truffet, Raphaël; Aydogan, Dogu Baran; Adluru, Nagesh; Nair, Veena A; Prabhakaran, Vivek; Bendlin, Barbara B; Alexander, Andrew L; Bosticardo, Sara; Gabusi, Ilaria; Ocampo-Pineda, Mario; Battocchio, Matteo; Piskorova, Zuzana; Bontempi, Pietro; Schiavi, Simona; Daducci, Alessandro; Stafiej, Aleksandra; Ciupek, Dominika; Bogusz, Fabian; Pieciak, Tomasz; Frigo, Matteo; Sedlar, Sara; Deslauriers-Gauthier, Samuel; Kojčić, Ivana; Zucchelli, Mauro; Laghrissi, Hiba; Ji, Yang; Deriche, Rachid; Schilling, Kurt G; Landman, Bennett A; Cacciola, Alberto; Basile, Gianpaolo Antonio; Bertino, Salvatore; Newlin, Nancy; Kanakaraj, Praitayini; Rheault, Francois; Filipiak, Patryk; Shepherd, Timothy M; Lin, Ying-Chia; Placantonakis, Dimitris G; Boada, Fernando E; Baete, Steven H; Hernández-Gutiérrez, Erick; Ramírez-Manzanares, Alonso; Coronado-Leija, Ricardo; Stack-Sánchez, Pablo; Concha, Luis; Descoteaux, Maxime; Mansour L, Sina; Seguin, Caio; Zalesky, Andrew; Marshall, Kenji; Canales-Rodríguez, Erick J; Wu, Ye; Ahmad, Sahar; Yap, Pew-Thian; Théberge, Antoine; Gagnon, Florence; Massi, Frédéric; Fischi-Gomez, Elda; Gardier, Rémy; Haro, Juan Luis Villarreal; Pizzolato, Marco; Caruyer, Emmanuel; Thiran, Jean-Philippe |
NeuroImage |
37330025 |
2023 Aug 15 |
| A COMPOSITIONAL MODEL TO ASSESS EXPRESSION CHANGES FROM SINGLE-CELL RNA-SEQ DATA. |
Ma, Xiuyu; Korthauer, Keegan; Kendziorski, Christina; Newton, Michael A |
The annals of applied statistics |
37332668 |
2021 Jun |
| Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. |
Baur, Brittany; Shin, Junha; Schreiber, Jacob; Zhang, Shilu; Zhang, Yi; Manjunath, Mohith; Song, Jun S; Stafford Noble, William; Roy, Sushmita |
PLoS computational biology |
37428809 |
2023 Jul |
| Subcortical Brain Alterations in Carriers of Genomic Copy Number Variants. |
Kumar, Kuldeep; Modenato, Claudia; Moreau, Clara; Ching, Christopher R K; Harvey, Annabelle; Martin-Brevet, Sandra; Huguet, Guillaume; Jean-Louis, Martineau; Douard, Elise; Martin, Charles-Olivier; Younis, Nadine; Tamer, Petra; Maillard, Anne M; Rodriguez-Herreros, Borja; Pain, Aurélie; 16p11.2 European Consortium, Simons Searchlight Consortium; Kushan, Leila; Isaev, Dmitry; Alpert, Kathryn; Ragothaman, Anjani; Turner, Jessica A; Wang, Lei; Ho, Tiffany C; Schmaal, Lianne; Silva, Ana I; van den Bree, Marianne B M; Linden, David E J; Owen, Michael J; Hall, Jeremy; Lippé, Sarah; Dumas, Guillaume; Draganski, Bogdan; Gutman, Boris A; Sønderby, Ida E; Andreassen, Ole A; Schultz, Laura M; Almasy, Laura; Glahn, David C; Bearden, Carrie E; Thompson, Paul M; Jacquemont, Sébastien |
The American journal of psychiatry |
37434504 |
2023 Sep 01 |
| The Role of Empathy in Alcohol Use of Bullying Perpetrators and Victims: Lower Personal Empathic Distress Makes Male Perpetrators of Bullying More Vulnerable to Alcohol Use. |
Prignitz, Maren; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Robinson, Lauren; Smolka, Michael N; Walter, Henrik; Winterer, Jeanne M; Whelan, Robert; Schumann, Gunter; Nees, Frauke; Flor, Herta; On Behalf Of The Imagen Consortium |
International journal of environmental research and public health |
37444132 |
2023 Jul 03 |
| Bringing Micro to the Macro: How Citizen Science Data Enrich Geospatial Visualizations to Advance Health Equity. |
Soltani, Shamsi; Hinman, Jessica A; Blanco-Velazquez, Isela; Banchoff, Ann W; Campero, Maria I; Nelson, Lorene M; King, Abby C |
Journal of maps |
37448978 |
2023 |
| Nanoporous metal-polymer composite membranes for organics separations and catalysis. |
Detisch, Michael J; John Balk, Thomas; Bezold, Mariah; Bhattacharyya, Dibakar |
Journal of materials research |
37539433 |
2020 Oct |
| Author Correction: A shared neural basis underlying psychiatric comorbidity. |
Xie, Chao; Xiang, Shitong; Shen, Chun; Peng, Xuerui; Kang, Jujiao; Li, Yuzhu; Cheng, Wei; He, Shiqi; Bobou, Marina; Broulidakis, M John; van Noort, Betteke Maria; Zhang, Zuo; Robinson, Lauren; Vaidya, Nilakshi; Winterer, Jeanne; Zhang, Yuning; King, Sinead; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaître, Hervé; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Schmidt, Ulrike; Sinclair, Julia; Smolka, Michael N; Stringaris, Argyris; Walter, Henrik; Whelan, Robert; Desrivières, Sylvane; Sahakian, Barbara J; Robbins, Trevor W; Schumann, Gunter; Jia, Tianye; Feng, Jianfeng; IMAGEN Consortium; STRATIFY/ESTRA Consortium; ZIB Consortium |
Nature medicine |
37558759 |
2023 Sep |
| An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. |
Penn, Steve; Lomax, Jane; Karlsson, Anneli; Antonucci, Vincent; Zachmann, Carl-Dieter; Kanza, Samantha; Schurer, Stephan; Turner, John |
Journal of biomedical semantics |
37568227 |
2023 Aug 11 |
| Regional, circuit and network heterogeneity of brain abnormalities in psychiatric disorders. |
Segal, Ashlea; Parkes, Linden; Aquino, Kevin; Kia, Seyed Mostafa; Wolfers, Thomas; Franke, Barbara; Hoogman, Martine; Beckmann, Christian F; Westlye, Lars T; Andreassen, Ole A; Zalesky, Andrew; Harrison, Ben J; Davey, Christopher G; Soriano-Mas, Carles; Cardoner, Narcís; Tiego, Jeggan; Yücel, Murat; Braganza, Leah; Suo, Chao; Berk, Michael; Cotton, Sue; Bellgrove, Mark A; Marquand, Andre F; Fornito, Alex |
Nature neuroscience |
37580620 |
2023 Sep |
| Association between vmPFC gray matter volume and smoking initiation in adolescents. |
Xiang, Shitong; Jia, Tianye; Xie, Chao; Cheng, Wei; Chaarani, Bader; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny A; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Garavan, Hugh; Schumann, Gunter; Sahakian, Barbara J; Robbins, Trevor W; Feng, Jianfeng; IMAGEN Consortium |
Nature communications |
37582920 |
2023 Aug 15 |
| A stable and replicable neural signature of lifespan adversity in the adult brain. |
Holz, Nathalie E; Zabihi, Mariam; Kia, Seyed Mostafa; Monninger, Maximillian; Aggensteiner, Pascal-M; Siehl, Sebastian; Floris, Dorothea L; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Meyer-Lindenberg, Andreas; Brandeis, Daniel; Buitelaar, Jan K; Nees, Frauke; Beckmann, Christian; IMAGEN Consortium; Banaschewski, Tobias; Marquand, Andre F |
Nature neuroscience |
37604888 |
2023 Sep |
| Evaluating Scalable Supervised Learning for Synthesize-on-Demand Chemical Libraries. |
Alnammi, Moayad; Liu, Shengchao; Ericksen, Spencer S; Ananiev, Gene E; Voter, Andrew F; Guo, Song; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony |
Journal of chemical information and modeling |
37625010 |
2023 Sep 11 |
| Data-driven biomarkers outperform theory-based biomarkers in predicting stroke motor outcomes. |
Olafson, Emily R; Sperber, Christoph; Jamison, Keith W; Bowren Jr, Mark D; Boes, Aaron D; Andrushko, Justin W; Borich, Michael R; Boyd, Lara A; Cassidy, Jessica M; Conforto, Adriana B; Cramer, Steven C; Dula, Adrienne N; Geranmayeh, Fatemeh; Hordacre, Brenton; Jahanshad, Neda; Kautz, Steven A; Lo, Bethany; MacIntosh, Bradley J; Piras, Fabrizio; Robertson, Andrew D; Seo, Na Jin; Soekadar, Surjo R; Thomopoulos, Sophia I; Vecchio, Daniela; Weng, Timothy B; Westlye, Lars T; Winstein, Carolee J; Wittenberg, George F; Wong, Kristin A; Thompson, Paul M; Liew, Sook-Lei; Kuceyeski, Amy F |
bioRxiv : the preprint server for biology |
37693419 |
2023 Sep 01 |
| Genetics of cell-type-specific post-transcriptional gene regulation during human neurogenesis. |
Aygün, Nil; Krupa, Oleh; Mory, Jessica; Le, Brandon; Valone, Jordan; Liang, Dan; Love, Michael I; Stein, Jason L |
bioRxiv : the preprint server for biology |
37693528 |
2023 Sep 01 |
| Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation. |
Kolmogorov, Mikhail; Billingsley, Kimberley J; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Alvarez Jerez, Pilar; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W; Traynor, Bryan J; Miga, Karen H; Jain, Miten; Timp, Winston; Phillippy, Adam M; Chaisson, Mark; Sedlazeck, Fritz J; Blauwendraat, Cornelis; Paten, Benedict |
Nature methods |
37710018 |
2023 Oct |
| Local read haplotagging enables accurate long-read small variant calling. |
Kolesnikov, Alexey; Cook, Daniel; Nattestad, Maria; McNulty, Brandy; Gorzynski, John; Goenka, Sneha; Ashley, Euan A; Jain, Miten; Miga, Karen H; Paten, Benedict; Chang, Pi-Chuan; Carroll, Andrew; Shafin, Kishwar |
bioRxiv : the preprint server for biology |
37745389 |
2023 Sep 12 |
| Whole Genome Sequencing Based Analysis of Inflammation Biomarkers in the Trans-Omics for Precision Medicine (TOPMed) Consortium. |
Jiang, Min-Zhi; Gaynor, Sheila M; Li, Xihao; Van Buren, Eric; Stilp, Adrienne; Buth, Erin; Wang, Fei Fei; Manansala, Regina; Gogarten, Stephanie M; Li, Zilin; Polfus, Linda M; Salimi, Shabnam; Bis, Joshua C; Pankratz, Nathan; Yanek, Lisa R; Durda, Peter; Tracy, Russell P; Rich, Stephen S; Rotter, Jerome I; Mitchell, Braxton D; Lewis, Joshua P; Psaty, Bruce M; Pratte, Katherine A; Silverman, Edwin K; Kaplan, Robert C; Avery, Christy; North, Kari; Mathias, Rasika A; Faraday, Nauder; Lin, Honghuang; Wang, Biqi; Carson, April P; Norwood, Arnita F; Gibbs, Richard A; Kooperberg, Charles; Lundin, Jessica; Peters, Ulrike; Dupuis, Josée; Hou, Lifang; Fornage, Myriam; Benjamin, Emelia J; Reiner, Alexander P; Bowler, Russell P; Lin, Xihong; Auer, Paul L; Raffield, Laura M; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Inflammation Working Group |
bioRxiv : the preprint server for biology |
37745480 |
2023 Sep 12 |
| Hemispheric asymmetry in cortical thinning reflects intrinsic organization of the neurotransmitter systems and homotopic functional connectivity. |
Liao, Zhijie; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Paus, Tomáš; IMAGEN Consortium |
Proceedings of the National Academy of Sciences of the United States of America |
37831741 |
2023 Oct 17 |
| Uncontrolled eating and sensation-seeking partially explain the prediction of future binge drinking from adolescent brain structure. |
Rane, Roshan Prakash; Musial, Milena Philomena Maria; Beck, Anne; Rapp, Michael; Schlagenhauf, Florian; Banaschewski, Tobias; Bokde, Arun L W; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Lemaitre, Herve; Hohmann, Sarah; Schumann, Gunter; Walter, Henrik; Heinz, Andreas; Ritter, Kerstin; IMAGEN consortium |
NeuroImage. Clinical |
37837892 |
2023 |
| Applying a Gene Reversal Rate Computational Methodology to Identify Drugs for a Rare Cancer: Inflammatory Breast Cancer. |
Ji, Xiaojia; Williams, Kevin P; Zheng, Weifan |
Cancer informatics |
37846218 |
2023 |
| Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. |
Zhu, Xi; Kim, Yoojean; Ravid, Orren; He, Xiaofu; Suarez-Jimenez, Benjamin; Zilcha-Mano, Sigal; Lazarov, Amit; Lee, Seonjoo; Abdallah, Chadi G; Angstadt, Michael; Averill, Christopher L; Baird, C Lexi; Baugh, Lee A; Blackford, Jennifer U; Bomyea, Jessica; Bruce, Steven E; Bryant, Richard A; Cao, Zhihong; Choi, Kyle; Cisler, Josh; Cotton, Andrew S; Daniels, Judith K; Davenport, Nicholas D; Davidson, Richard J; DeBellis, Michael D; Dennis, Emily L; Densmore, Maria; deRoon-Cassini, Terri; Disner, Seth G; Hage, Wissam El; Etkin, Amit; Fani, Negar; Fercho, Kelene A; Fitzgerald, Jacklynn; Forster, Gina L; Frijling, Jessie L; Geuze, Elbert; Gonenc, Atilla; Gordon, Evan M; Gruber, Staci; Grupe, Daniel W; Guenette, Jeffrey P; Haswell, Courtney C; Herringa, Ryan J; Herzog, Julia; Hofmann, David Bernd; Hosseini, Bobak; Hudson, Anna R; Huggins, Ashley A; Ipser, Jonathan C; Jahanshad, Neda; Jia-Richards, Meilin; Jovanovic, Tanja; Kaufman, Milissa L; Kennis, Mitzy; King, Anthony; Kinzel, Philipp; Koch, Saskia B J; Koerte, Inga K; Koopowitz, Sheri M; Korgaonkar, Mayuresh S; Krystal, John H; Lanius, Ruth; Larson, Christine L; Lebois, Lauren A M; Li, Gen; Liberzon, Israel; Lu, Guang Ming; Luo, Yifeng; Magnotta, Vincent A; Manthey, Antje; Maron-Katz, Adi; May, Geoffery; McLaughlin, Katie; Mueller, Sven C; Nawijn, Laura; Nelson, Steven M; Neufeld, Richard W J; Nitschke, Jack B; O'Leary, Erin M; Olatunji, Bunmi O; Olff, Miranda; Peverill, Matthew; Phan, K Luan; Qi, Rongfeng; Quidé, Yann; Rektor, Ivan; Ressler, Kerry; Riha, Pavel; Ross, Marisa; Rosso, Isabelle M; Salminen, Lauren E; Sambrook, Kelly; Schmahl, Christian; Shenton, Martha E; Sheridan, Margaret; Shih, Chiahao; Sicorello, Maurizio; Sierk, Anika; Simmons, Alan N; Simons, Raluca M; Simons, Jeffrey S; Sponheim, Scott R; Stein, Murray B; Stein, Dan J; Stevens, Jennifer S; Straube, Thomas; Sun, Delin; Théberge, Jean; Thompson, Paul M; Thomopoulos, Sophia I; van der Wee, Nic J A; van der Werff, Steven J A; van Erp, Theo G M; van Rooij, Sanne J H; van Zuiden, Mirjam; Varkevisser, Tim; Veltman, Dick J; Vermeiren, Robert R J M; Walter, Henrik; Wang, Li; Wang, Xin; Weis, Carissa; Winternitz, Sherry; Xie, Hong; Zhu, Ye; Wall, Melanie; Neria, Yuval; Morey, Rajendra A |
NeuroImage |
37858907 |
2023 Dec 01 |
| Genomic Structural Equation Modeling Reveals Latent Phenotypes in the Human Cortex with Distinct Genetic Architecture. |
Morey, Rajendra; Zheng, Yuanchao; Sun, Delin; Garrett, Melanie; Gasperi, Marianna; Maihofer, Adam; Baird, C Lexi; Grasby, Katrina; Huggins, Ashley; Haswell, Courtney; Thompson, Paul; Medland, Sarah; Gustavson, Daniel; Panizzon, Matthew; Kremen, William; Nievergelt, Caroline; Ashley-Koch, Allison; Logue, Logue |
Research square |
37886496 |
2023 Oct 03 |
| Heterogeneous Network Representation Learning: A Unified Framework with Survey and Benchmark. |
Yang, Carl; Xiao, Yuxin; Zhang, Yu; Sun, Yizhou; Han, Jiawei |
IEEE transactions on knowledge and data engineering |
37915376 |
2022 Oct |
| An individualized Bayesian method for estimating genomic variants of hypertension. |
Rahman, Md Asad; Cai, Chunhui; Bo, Na; McNamara, Dennis M; Ding, Ying; Cooper, Gregory F; Lu, Xinghua; Liu, Jinling |
BMC genomics |
37936055 |
2023 Nov 07 |
| Cerebellar Volume and Disease Staging in Parkinson's Disease: An ENIGMA-PD Study. |
Kerestes, Rebecca; Laansma, Max A; Owens-Walton, Conor; Perry, Andrew; van Heese, Eva M; Al-Bachari, Sarah; Anderson, Tim J; Assogna, Francesca; Aventurato, Ítalo K; van Balkom, Tim D; Berendse, Henk W; van den Berg, Kevin R E; Betts, Rebecca; Brioschi, Ricardo; Carr, Jonathan; Cendes, Fernando; Clark, Lyles R; Dalrymple-Alford, John C; Dirkx, Michiel F; Druzgal, Jason; Durrant, Helena; Emsley, Hedley C A; Garraux, Gaëtan; Haroon, Hamied A; Helmich, Rick C; van den Heuvel, Odile A; João, Rafael B; Johansson, Martin E; Khachatryan, Samson G; Lochner, Christine; McMillan, Corey T; Melzer, Tracy R; Mosley, Philip E; Newman, Benjamin; Opriessnig, Peter; Parkes, Laura M; Pellicano, Clelia; Piras, Fabrizio; Pitcher, Toni L; Poston, Kathleen L; Rango, Mario; Roos, Annerine; Rummel, Christian; Schmidt, Reinhold; Schwingenschuh, Petra; Silva, Lucas S; Smith, Viktorija; Squarcina, Letizia; Stein, Dan J; Tavadyan, Zaruhi; Tsai, Chih-Chien; Vecchio, Daniela; Vriend, Chris; Wang, Jiun-Jie; Wiest, Roland; Yasuda, Clarissa L; Young, Christina B; Jahanshad, Neda; Thompson, Paul M; van der Werf, Ysbrand D; Harding, Ian H; ENIGMA-Parkinson's Study |
Movement disorders : official journal of the Movement Disorder Society |
37964373 |
2023 Dec |
| Differing impact of the COVID-19 pandemic on youth mental health: combined population and clinical study. |
Qi, Lu; Zhang, Zuo; Robinson, Lauren; Bobou, Marina; Gourlan, Chantal; Winterer, Jeanne; Adams, Rebecca; Agunbiade, Kofoworola; Zhang, Yuning; King, Sinead; Vaidya, Nilakshi; Artiges, Eric; Banaschewski, Tobias; Bokde, Arun L W; Broulidakis, M John; Brühl, Rüdiger; Flor, Herta; Fröhner, Juliane H; Garavan, Hugh; Grigis, Antoine; Heinz, Andreas; Hohmann, Sarah; Martinot, Marie-Laure Paillère; Millenet, Sabina; Nees, Frauke; van Noort, Betteke Maria; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Sinclair, Julia; Smolka, Michael N; Whelan, Robert; Stringaris, Argyris; Walter, Henrik; Martinot, Jean-Luc; Schumann, Gunter; Schmidt, Ulrike; Desrivières, Sylvane; IMAGEN Consortium, ESTRA Consortium and STRATIFY Consortium |
BJPsych open |
37981567 |
2023 Nov 20 |
| SillyPutty: Improved clustering by optimizing the silhouette width. |
Bombina, Polina; Tally, Dwayne; Abrams, Zachary B; Coombes, Kevin R |
bioRxiv : the preprint server for biology |
37986817 |
2023 Nov 11 |
| ChatGPT usage in the Reactome curation process. |
Tiwari, Krishna; Matthews, Lisa; May, Bruce; Shamovsky, Veronica; Orlic-Milacic, Marija; Rothfels, Karen; Ragueneau, Eliot; Gong, Chuqiao; Stephan, Ralf; Li, Nancy; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
bioRxiv : the preprint server for biology |
37986970 |
2023 Nov 08 |
| The bidirectional effects between cognitive ability and brain morphology: A life course Mendelian randomization analysis. |
Korologou-Linden, Roxanna; Schuurmans, Isabel K; Cecil, Charlotte A M; White, Tonya; Banaschewski, Tobias; Bokde, Arun L W; Desrivières, Sylvane; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Holz, Nathalie; Fröhner, Juliane H; Smolka, M; Walter, Henrik; Winterer, Jeanne; Whelan, Robert; Schumann, Gunter; Howe, Laura D; Ben-Shlomo, Yoav; Davies, Neil M; Anderson, Emma L |
medRxiv : the preprint server for health sciences |
38014064 |
2023 Nov 17 |
| Examining the association between posttraumatic stress disorder and disruptions in cortical networks identified using data-driven methods. |
Yang, Jin; Huggins, Ashley A; Sun, Delin; Baird, C Lexi; Haswell, Courtney C; Frijling, Jessie L; Olff, Miranda; van Zuiden, Mirjam; Koch, Saskia B J; Nawijn, Laura; Veltman, Dick J; Suarez-Jimenez, Benjamin; Zhu, Xi; Neria, Yuval; Hudson, Anna R; Mueller, Sven C; Baker, Justin T; Lebois, Lauren A M; Kaufman, Milissa L; Qi, Rongfeng; Lu, Guang Ming; Říha, Pavel; Rektor, Ivan; Dennis, Emily L; Ching, Christopher R K; Thomopoulos, Sophia I; Salminen, Lauren E; Jahanshad, Neda; Thompson, Paul M; Stein, Dan J; Koopowitz, Sheri M; Ipser, Jonathan C; Seedat, Soraya; du Plessis, Stefan; van den Heuvel, Leigh L; Wang, Li; Zhu, Ye; Li, Gen; Sierk, Anika; Manthey, Antje; Walter, Henrik; Daniels, Judith K; Schmahl, Christian; Herzog, Julia I; Liberzon, Israel; King, Anthony; Angstadt, Mike; Davenport, Nicholas D; Sponheim, Scott R; Disner, Seth G; Straube, Thomas; Hofmann, David; Grupe, Daniel W; Nitschke, Jack B; Davidson, Richard J; Larson, Christine L; deRoon-Cassini, Terri A; Blackford, Jennifer U; Olatunji, Bunmi O; Gordon, Evan M; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Levy, Ifat; Harpaz-Rotem, Ilan; Krystal, John H; Morey, Rajendra A; Sotiras, Aristeidis |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology |
38017161 |
2023 Nov 28 |
| Unravelling Robust Brain-Behavior Links of Depressive Symptoms Through Granular Network Models: Understanding Heterogeneity and Clinical Implications. |
Freichel, René; Lenartowicz, Agatha; Douw, Linda; Kruschwitz, Johann D; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Holz, Nathalie; Baeuchl, Christian; Smolka, Michael N; Vaidya, Nilakshi; Whelan, Robert; Frouin, Vincent; Schumann, Gunter; IMAGEN Consortium; Walter, Henrik; Blanken, Tessa F |
medRxiv : the preprint server for health sciences |
38045393 |
2023 Nov 21 |
| Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability. |
Schmilovich, Zoe; Bourque, Vincent-Raphaël; Douard, Elise; Huguet, Guillaume; Poulain, Cécile; Ross, Jay P; Alipour, Paria; Castonguay, Charles-Étienne; Younis, Nadine; Jean-Louis, Martineau; Saci, Zohra; Pausova, Zdenka; Paus, Tomas; Schuman, Gunter; Porteous, David; Davies, Gail; Redmond, Paul; Harris, Sarah E; Deary, Ian J; Whalley, Heather; Hayward, Caroline; Dion, Patrick A; Jacquemont, Sébastien; Rouleau, Guy A |
medRxiv : the preprint server for health sciences |
38076919 |
2023 Nov 29 |
| Normative Modeling of Brain Morphometry Across the Lifespan Using CentileBrain: Algorithm Benchmarking and Model Optimization. |
Ge, Ruiyang; Yu, Yuetong; Qi, Yi Xuan; Fan, Yunan Vera; Chen, Shiyu; Gao, Chuntong; Haas, Shalaila S; Modabbernia, Amirhossein; New, Faye; Agartz, Ingrid; Asherson, Philip; Ayesa-Arriola, Rosa; Banaj, Nerisa; Banaschewski, Tobias; Baumeister, Sarah; Bertolino, Alessandro; Boomsma, Dorret I; Borgwardt, Stefan; Bourque, Josiane; Brandeis, Daniel; Breier, Alan; Brodaty, Henry; Brouwer, Rachel M; Buckner, Randy; Buitelaar, Jan K; Cannon, Dara M; Caseras, Xavier; Cervenka, Simon; Conrod, Patricia J; Crespo-Facorro, Benedicto; Crivello, Fabrice; Crone, Eveline A; de Haan, Liewe; de Zubicaray, Greig I; Di Giorgio, Annabella; Erk, Susanne; Fisher, Simon E; Franke, Barbara; Frodl, Thomas; Glahn, David C; Grotegerd, Dominik; Gruber, Oliver; Gruner, Patricia; Gur, Raquel E; Gur, Ruben C; Harrison, Ben J; Hatton, Sean N; Hickie, Ian; Howells, Fleur M; Pol, Hilleke E Hulshoff; Huyser, Chaim; Jernigan, Terry L; Jiang, Jiyang; Joska, John A; Kahn, René S; Kalnin, Andrew J; Kochan, Nicole A; Koops, Sanne; Kuntsi, Jonna; Lagopoulos, Jim; Lazaro, Luisa; Lebedeva, Irina S; Lochner, Christine; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Brenna C; McDonald, Colm; McMahon, Katie L; Nakao, Tomohiro; Nyberg, Lars; Piras, Fabrizio; Portella, Maria J; Qiu, Jiang; Roffman, Joshua L; Sachdev, Perminder S; Sanford, Nicole; Satterthwaite, Theodore D; Saykin, Andrew J; Schumann, Gunter; Sellgren, Carl M; Sim, Kang; Smoller, Jordan W; Soares, Jair; Sommer, Iris E; Spalletta, Gianfranco; Stein, Dan J; Tamnes, Christian K; Thomopolous, Sophia I; Tomyshev, Alexander S; Tordesillas-Gutiérrez, Diana; Trollor, Julian N; van 't Ent, Dennis; van den Heuvel, Odile A; van Erp, Theo Gm; van Haren, Neeltje Em; Vecchio, Daniela; Veltman, Dick J; Walter, Henrik; Wang, Yang; Weber, Bernd; Wei, Dongtao; Wen, Wei; Westlye, Lars T; Wierenga, Lara M; Williams, Steven Cr; Wright, Margaret J; Medland, Sarah; Wu, Mon-Ju; Yu, Kevin; Jahanshad, Neda; Thompson, Paul M; Frangou, Sophia |
bioRxiv : the preprint server for biology |
38076938 |
2023 Dec 02 |
| Protein signaling and drug target activation signatures to guide therapy prioritization: Therapeutic resistance and sensitivity in the I-SPY 2 Trial. |
Gallagher, Rosa I; Wulfkuhle, Julia; Wolf, Denise M; Brown-Swigart, Lamorna; Yau, Christina; O'Grady, Nicholas; Basu, Amrita; Lu, Ruixiao; Campbell, Michael J; Magbanua, Mark J; Coppé, Jean-Philippe; I-SPY 2 Investigators; Asare, Smita M; Sit, Laura; Matthews, Jeffrey B; Perlmutter, Jane; Hylton, Nola; Liu, Minetta C; Symmans, W Fraser; Rugo, Hope S; Isaacs, Claudine; DeMichele, Angela M; Yee, Douglas; Pohlmann, Paula R; Hirst, Gillian L; Esserman, Laura J; van 't Veer, Laura J; Petricoin, Emanuel F |
Cell reports. Medicine |
38086377 |
2023 Dec 19 |
| Machine learning-based donor permission extraction from informed consent documents. |
Zhang, Meng; Sankaranarayanapillai, Madhuri; Du, Jingcheng; Xiang, Yang; Manion, Frank J; Harris, Marcelline R; Stansbury, Cooper; Pham, Huy Anh; Tao, Cui |
BMC bioinformatics |
38102593 |
2023 Dec 15 |
| Personalized Pangenome References. |
Sirén, Jouni; Eskandar, Parsa; Ungaro, Matteo Tommaso; Hickey, Glenn; Eizenga, Jordan M; Novak, Adam M; Chang, Xian; Chang, Pi-Chuan; Kolmogorov, Mikhail; Carroll, Andrew; Monlong, Jean; Paten, Benedict |
bioRxiv : the preprint server for biology |
38168361 |
2023 Dec 15 |
| Smaller total and subregional cerebellar volumes in posttraumatic stress disorder: a mega-analysis by the ENIGMA-PGC PTSD workgroup. |
Huggins, Ashley A; Baird, C Lexi; Briggs, Melvin; Laskowitz, Sarah; Hussain, Ahmed; Fouda, Samar; Haswell, Courtney; Sun, Delin; Salminen, Lauren E; Jahanshad, Neda; Thomopoulos, Sophia I; Veltman, Dick J; Frijling, Jessie L; Olff, Miranda; van Zuiden, Mirjam; Koch, Saskia B J; Nawjin, Laura; Wang, Li; Zhu, Ye; Li, Gen; Stein, Dan J; Ipser, Jonathan; Seedat, Soraya; du Plessis, Stefan; van den Heuvel, Leigh L; Suarez-Jimenez, Benjamin; Zhu, Xi; Kim, Yoojean; He, Xiaofu; Zilcha-Mano, Sigal; Lazarov, Amit; Neria, Yuval; Stevens, Jennifer S; Ressler, Kerry J; Jovanovic, Tanja; van Rooij, Sanne J H; Fani, Negar; Hudson, Anna R; Mueller, Sven C; Sierk, Anika; Manthey, Antje; Walter, Henrik; Daniels, Judith K; Schmahl, Christian; Herzog, Julia I; Říha, Pavel; Rektor, Ivan; Lebois, Lauren A M; Kaufman, Milissa L; Olson, Elizabeth A; Baker, Justin T; Rosso, Isabelle M; King, Anthony P; Liberzon, Isreal; Angstadt, Mike; Davenport, Nicholas D; Sponheim, Scott R; Disner, Seth G; Straube, Thomas; Hofmann, David; Qi, Rongfeng; Lu, Guang Ming; Baugh, Lee A; Forster, Gina L; Simons, Raluca M; Simons, Jeffrey S; Magnotta, Vincent A; Fercho, Kelene A; Maron-Katz, Adi; Etkin, Amit; Cotton, Andrew S; O'Leary, Erin N; Xie, Hong; Wang, Xin; Quidé, Yann; El-Hage, Wissam; Lissek, Shmuel; Berg, Hannah; Bruce, Steven; Cisler, Josh; Ross, Marisa; Herringa, Ryan J; Grupe, Daniel W; Nitschke, Jack B; Davidson, Richard J; Larson, Christine L; deRoon-Cassini, Terri A; Tomas, Carissa W; Fitzgerald, Jacklynn M; Blackford, Jennifer Urbano; Olatunji, Bunmi O; Kremen, William S; Lyons, Michael J; Franz, Carol E; Gordon, Evan M; May, Geoffrey; Nelson, Steven M; Abdallah, Chadi G; Levy, Ifat; Harpaz-Rotem, Ilan; Krystal, John H; Dennis, Emily L; Tate, David F; Cifu, David X; Walker, William C; Wilde, Elizabeth A; Harding, Ian H; Kerestes, Rebecca; Thompson, Paul M; Morey, Rajendra |
Molecular psychiatry |
38195980 |
2024 Jan 10 |
| Population clustering of structural brain aging and its association with brain development. |
Duan, Haojing; Shi, Runye; Kang, Jujiao; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomáš; Poustka, Luise; Hohmann, Sarah; Holz, Nathalie; Fröhner, Juliane H; Smolka, Michael N; Vaidya, Nilakshi; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lin, Xiaolei; Feng, Jianfeng; IMAGEN consortium |
medRxiv : the preprint server for health sciences |
38260410 |
2024 Jan 10 |
| Pro-SMP finder-A systematic approach for discovering small membrane proteins in prokaryotes. |
Hoffman, Tara; Kinne, Jeff; Cho, Kyu Hong |
PloS one |
38422081 |
2024 |
